LOCUS KM401565 6547 bp RNA linear VRL 01-DEC-2015 DEFINITION Astrovirus PA strain Paris, complete genome. ACCESSION KM401565 VERSION KM401565.1 KEYWORDS . SOURCE Astrovirus PA ORGANISM Astrovirus PA Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; unclassified Astroviridae. REFERENCE 1 (bases 1 to 6547) AUTHORS Fremond,M.-L., Perot,P., Muth,E., Cros,G., Dumarest,M., Mahlaoui,N., Seilhean,D., Desguerre,I., Picard,C., Hebert,C., Corre-Catelin,N., Neven,B., Lecuit,M., Blanche,S. and Eloit,M. TITLE Next generation sequencing identifies an Astrovirus in an encephalitis case in a boy with X-linked agammaglobulinemia JOURNAL Unpublished REFERENCE 2 (bases 1 to 6547) AUTHORS Fremond,M.-L., Perot,P., Muth,E., Cros,G., Dumarest,M., Mahlaoui,N., Seilhean,D., Desguerre,I., Picard,C., Hebert,C., Corre-Catelin,N., Neven,B., Lecuit,M., Blanche,S. and Eloit,M. TITLE Direct Submission JOURNAL Submitted (25-AUG-2014) Virology Department, Institut Pasteur, 28 rue du Dr. Roux, Paris 75015, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC assembler v. 4.22.107090 Sequencing Technology :: IonTorrent; Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6547 /mol_type="genomic RNA" /db_xref="taxon:1659650" /strain="Paris" /organism="Astrovirus PA" 5'UTR 1..38 CDS join(39..2654,2654..4222) /ribosomal_slippage /codon_start=1 /protein_id="AKI81871.1" /translation="MERSYKPSGSSHYDPYDRVLQHGSVKARIQGLQLNKVAKTKLEE IFSCGGPLCFGYGDVETTRVSNGVVEPQPLIVETVYVSGVREGNEYVTYLFKPGLNDW VEVDANIHKPTAIVGVLYHEYSRLKSENESLKIERSSLQLDVSILRHELERARPPTKT IRPFSVRCIVLYGLLIGLLFLHISQAFRTGVCLDPDVGETLEPQTCINWKWDGGIEPD ETIPFYDRFTAWYAGLIQQFKSMYNDIVIDLVIQAFGFAYTWTAIALMIGTYYMLKST NPAYMLVTLMMATVSRMQLFAISAVPNMEVTSMFSLWCCMVLYYFNQAAAMAASLMIA AMCSIVCLFMGDAEYVKVIRGHGVVVLTVVVSHVFSVLLVPHWVTVFLIVAFRIVRLI GVVVGEKIEVRNAEGKVTSVTSTTTSWLNRISGFVQSKFTQKVRTGIMSTARVIPNGV VIVESKESSGTGFRVQNYIVTAGHVVGNETQIKVKWGDVNVYTKVVYVHPRKDMAYLA LPSEYQALPTYKFAKLIEDGTVVITSMEDCGVLAVAVTEGVIVKDNITYAVSTRNGMS GSPVTNVDGRIVGIHQANTGFTGGAVIIKQEDLPPQKKPQREIDLENKIKELEDALKG QMNQGLNENQIIELIRLAVGREVEILRHEINMNQAKGKDKRKNHHKRRRKGKVWTEEE YKDLLEKGFTRQQLRDMAEVLREADYSEDDESDEYDTGYPQWSDPEDSEEVEREWFGP KKKILDEVEGGWSNTDFWEQCQKVWKEMEPMPEESVNTLPSHLSDKYGITCYVVTKSD MEALARDLQEYQAKVEEKIKANVVRGQWLEGVNPKTIISELDELWLKLNHLMWTHGIV PFIQRKKINRKKQQKNLEGGPETGAPKPEQLRLGYWRELLQPGEYYLTPPHCPLVGVL PIDRPISDYDEPIDDLLNLLPKCEEKPPYAPSTWGPEAYRRSFDKFFYRKPTENIKGK YPREWKFAMSVLRREFDFLQDSVLIDITSTSKNADSTPAYPKTLWWKTETDYLKERGY QDYIKELDLIRSGERPDVLWYLFLKKEILKISKIEEEDIRQIVCADPIFSRIGCVFEE HQNQLMKNRTLTRMGQCGWSPFMGGFHKRIKRLVDKGNDYFIEFDWTRYDGTIPNEVF RAIKDFRFSCLRGDLQTKENRDVYNWYCENIFRRYVMLPSGEVTIQDRGNPSGQISTT MDNNICNVFFQAFEFAYLNTELDSDELKENWDKYDSLIYGDDRLTTTPILCDNYVDRV IKMYADVFGMWVKREKVKVSNEINGLTFCGFTVQESNGLFVPIPADTDKLLAGLITPI KKLPDILSLYGKLLCYRILGHNLPDDHKFKNYILVALEVVARHIRASGGEEPYYITDS MLDRLWRGGPKQSHGW" /product="non-structural protein 1ab" /note="contains serine protease and RNA-dependent RNA polymerase; ORF1ab" CDS 39..2699 /codon_start=1 /protein_id="AKI81872.1" /translation="MERSYKPSGSSHYDPYDRVLQHGSVKARIQGLQLNKVAKTKLEE IFSCGGPLCFGYGDVETTRVSNGVVEPQPLIVETVYVSGVREGNEYVTYLFKPGLNDW VEVDANIHKPTAIVGVLYHEYSRLKSENESLKIERSSLQLDVSILRHELERARPPTKT IRPFSVRCIVLYGLLIGLLFLHISQAFRTGVCLDPDVGETLEPQTCINWKWDGGIEPD ETIPFYDRFTAWYAGLIQQFKSMYNDIVIDLVIQAFGFAYTWTAIALMIGTYYMLKST NPAYMLVTLMMATVSRMQLFAISAVPNMEVTSMFSLWCCMVLYYFNQAAAMAASLMIA AMCSIVCLFMGDAEYVKVIRGHGVVVLTVVVSHVFSVLLVPHWVTVFLIVAFRIVRLI GVVVGEKIEVRNAEGKVTSVTSTTTSWLNRISGFVQSKFTQKVRTGIMSTARVIPNGV VIVESKESSGTGFRVQNYIVTAGHVVGNETQIKVKWGDVNVYTKVVYVHPRKDMAYLA LPSEYQALPTYKFAKLIEDGTVVITSMEDCGVLAVAVTEGVIVKDNITYAVSTRNGMS GSPVTNVDGRIVGIHQANTGFTGGAVIIKQEDLPPQKKPQREIDLENKIKELEDALKG QMNQGLNENQIIELIRLAVGREVEILRHEINMNQAKGKDKRKNHHKRRRKGKVWTEEE YKDLLEKGFTRQQLRDMAEVLREADYSEDDESDEYDTGYPQWSDPEDSEEVEREWFGP KKKILDEVEGGWSNTDFWEQCQKVWKEMEPMPEESVNTLPSHLSDKYGITCYVVTKSD MEALARDLQEYQAKVEEKIKANVVRGQWLEGVNPKTIISELDELWLKLNHLMWTHGIV PFIQRKKINRKKQQKNLKGAPKQGPQNQNN" /product="non-structural protein 1a" /note="putative serine protease; ORF1a" misc_feature 1383..1778 /note="trypsin-like peptidase domain" misc_feature 2648..2654 /note="ribosomal frameshift signal" misc_feature 2660..2682 /note="putative stem-loop structure" regulatory 4185..4212 /regulatory_class="promoter" CDS 4212..6446 /codon_start=1 /protein_id="AKI81873.1" /translation="MAGKQPQQALPKAAAKQIAKEVVKQEKKEPVVRKKKQFYPNLRF NNRSNKKFVKKQLDKNLKKQGLEGPRPRFAVTVSATIGKVGPNKSQGPELQISTFMHP SLMKEPNDGTNFGPLQSAAAQWGLWRLKSLSVTFTPLVGPSAVTGSVFRISLNMAQSP GATSWGGLGARKHKDVAVGKQFTWKLQKGDLTGPRETWWLTDTNEEGAQSCGPLLEIH GLGETTSTYKDAAWPGDLFIVEVRGRWEFANYNSKPALGMLERVTENIDASIEVANGN MIMTVPQRSQLARHMSERFERTTNASTVGETIWQIVDEGAGLVADVAPPPFTWLIKGG WWFVKKLLGRSANTDVQYLVYASLADAQNNRPVEAQNYTKVTRQTTLSSTQINAPNTG PNTTTGSIGNNNQQWPVPPTGAPVGDFYVCGKMTTLHMGGQSGIQATTLVNGMIYRTD HPESSTRPISNWEFTVLENNTIVGAGMGCVWFRGSEVAVWTLDGQKLSGWNTLDGVGT TQLTVAWRQHNRTIYGWANVVAWNSEEWHTNAEQPHQPILRLTYWLVKINVLSEPEDF DVVQKSPLAYLEDYTTVQSRSAIQKLNFQTFQKPEGGGTLRAQYSTSPRQGDFAVIWQ VGRHNFDMSTGKGTPVESLSDYVMPQQKDACSGMWYRALTSVGPRSDVLTLHFHLPIV EKDLVEQIIDQIQHRYRLTPLDSDSDSSSSDSDFEPEDGFEKLKIHEGSRSSGQKLRR GHAE" /product="capsid protein" /note="ORF2" 3'UTR 6449..6547 ORIGIN 1 ccaaatttgt tggctgtgcc gattggcgct aatgggccat ggagcgctca tacaagccta 61 gtggcagtag ccactatgat ccctatgata gggtactaca acatggtagt gtcaaagcac 121 ggatacaggg ccttcagctt aataaagtgg ctaaaaccaa gcttgaagag attttttcat 181 gtggtgggcc tttgtgtttt ggctatggtg atgttgagac tactcgtgtc tcaaatggag 241 ttgttgagcc acaaccttta attgttgaga cggtatatgt ctcaggagtg agagagggta 301 atgaatacgt cacttacctt tttaaaccgg gacttaatga ttgggttgag gttgacgcta 361 acatacataa acctactgcc attgttggtg tattatatca tgagtatagc aggcttaaat 421 cagagaatga aagtttgaaa atagagcgct catctttaca attggatgta tcaatcctca 481 gacatgagct tgagcgtgca agaccaccaa ctaaaacaat taggcctttc agcgttagat 541 gcattgtatt gtatggttta ctgattggcc ttttgttttt acacatctca caagctttta 601 ggactggtgt gtgtcttgat ccagatgttg gtgaaacact agagccacaa acctgtataa 661 actggaagtg ggacggtgga attgaaccag atgagactat tccattttat gataggttta 721 cagcttggta tgcaggttta atacaacagt ttaaaagtat gtataatgac attgtcattg 781 atttagtgat ccaggctttt ggctttgctt acacatggac agctatagca ctgatgatag 841 gcacatatta tatgttgaaa tccaccaacc cagcatatat gctagtgaca ttgatgatgg 901 caactgtgtc aagaatgcag ttatttgcaa tatctgctgt acctaacatg gaggtcactt 961 caatgttttc attgtggtgc tgtatggtat tatactattt taatcaggct gcagcaatgg 1021 ccgcgtcatt aatgatagca gctatgtgct ctattgtttg ccttttcatg ggtgatgctg 1081 agtatgtgaa ggtgataagg ggccatggcg tggttgtttt aactgttgtt gtttctcatg 1141 tctttagtgt tttgttagtg ccacactggg tcacagtgtt cctaatagtt gcttttagaa 1201 ttgttaggtt aattggagtg gttgttggtg aaaaaataga agttagaaat gctgagggaa 1261 aagttacaag tgtcacatca acaacaacat cctggttgaa ccgtatttct ggatttgtcc 1321 agtccaaatt tacccaaaaa gttagaactg gtataatgtc aacagctaga gtgataccta 1381 atggtgtcgt tattgttgag tcaaaagaaa gctcaggcac tggcttcagg gttcaaaatt 1441 acatagttac agccggacat gttgttggca atgaaacaca aataaaggtt aagtggggag 1501 atgttaatgt ttatacaaaa gttgtttacg tgcatcccag gaaggatatg gcttatcttg 1561 ccttaccatc agagtatcaa gcactcccaa catataaatt tgctaagttg attgaggatg 1621 gcaccgttgt cataacatca atggaggact gtggtgtcct tgccgttgcg gttacagaag 1681 gtgttattgt taaggataac ataacatatg ctgttagcac ccgaaacggc atgagtggtt 1741 cacctgttac aaatgttgat ggtagaattg ttggcataca ccaagccaac actggattta 1801 caggcggtgc tgtcatcata aagcaagagg atttaccacc ccaaaagaag ccacaaaggg 1861 agatagacct tgagaacaaa attaaagaat tagaagatgc ccttaaaggt cagatgaatc 1921 aaggcctaaa tgaaaatcag ataattgaat tgattcggct tgctgttggt cgtgaggttg 1981 aaatcttacg gcatgaaatt aatatgaacc aagcaaaagg taaagataaa aggaagaatc 2041 accacaagag gcgtaggaag gggaaagttt ggactgagga agagtacaaa gaccttttgg 2101 aaaagggatt caccagacag caattacggg atatggctga agtgcttaga gaggcagact 2161 attctgaaga tgatgaaagt gatgagtatg acactggtta tccacaatgg tcagacccag 2221 aagactctga ggaggttgaa agggaatggt ttgggccaaa gaaaaaaata cttgatgagg 2281 ttgaaggggg ttggtccaat actgatttct gggagcagtg tcagaaggtg tggaaggaga 2341 tggagcccat gccggaagag tctgttaaca ctctaccgtc acacttaagt gataagtatg 2401 gcattacatg ttatgttgtc acaaagagtg atatggaagc cttagcccgc gatttgcagg 2461 aataccaagc caaggttgag gagaagatta aggcaaatgt tgtccgtggt cagtggcttg 2521 agggagtcaa tccaaaaact atcataagtg agttggatga attatggctg aaactgaacc 2581 acttaatgtg gactcatggt atagtccctt tcatacagag gaaaaaaatt aacagaaaga 2641 aacagcaaaa aaacttgaag ggggccccga aacaggggcc ccaaaaccag aacaactaag 2701 gcttgggtac tggagagaac tattacaacc tggtgaatat taccttaccc ccccacattg 2761 ccccttggtt ggcgttctac caatagatag gcctataagt gattatgatg agccaattga 2821 tgatttatta aatttgttgc caaaatgtga ggaaaagccg ccgtacgcac cttctacatg 2881 gggaccagaa gcgtataggc ggtcatttga taaattcttt tacagaaagc caactgaaaa 2941 tataaaagga aaatacccta gggagtggaa atttgcaatg tcagtgctca gaagagaatt 3001 tgatttccta caggatagtg ttcttattga cataacgtcc acttcaaaga atgctgactc 3061 cacacctgct tatccaaaga cattatggtg gaaaactgaa acagattacc ttaaagagcg 3121 gggttaccaa gattacatta aagagttaga tttaataaga tctggagaga ggcctgacgt 3181 cttatggtac ttatttttaa aaaaagagat tttaaagata agtaaaattg aggaagaaga 3241 cattaggcaa attgtttgtg ctgatcccat tttctctaga attggttgtg tatttgaaga 3301 gcaccaaaat caattaatga aaaatagaac cctgacacgc atgggtcaat gtggatggtc 3361 accgtttatg ggaggtttcc ataaacgtat aaagcgctta gttgacaaag gcaatgatta 3421 tttcattgag ttcgactgga cgcgttatga tggtaccatc cctaatgaag tttttagggc 3481 tattaaggac ttcagattct cgtgtcttag gggagatttg caaacaaaag aaaacagaga 3541 tgtttacaac tggtattgtg agaacatatt tagaagatac gtgatgttac cttcaggaga 3601 agtgacaatc caggataggg ggaacccctc tggacaaata tccacaacta tggataataa 3661 catctgtaat gtctttttcc aggcatttga gtttgcatat ctgaatactg aattggattc 3721 tgatgaatta aaggaaaatt gggataagta tgactcactt atatatggag atgataggtt 3781 aactacaacc cctattttat gtgacaacta tgtagataga gtcattaaaa tgtatgctga 3841 tgtttttggg atgtgggtta agagagagaa agtaaaagtt tcaaatgaaa ttaatggatt 3901 gacattttgt ggctttactg ttcaagagtc aaatggcctt tttgtcccca taccagctga 3961 tacagataaa ttacttgctg gtttaataac accaataaag aagttacctg atattttgtc 4021 actctatggg aagctccttt gctaccgcat cctcggccat aacttgccgg atgaccataa 4081 atttaaaaat tacattttgg tcgccttgga ggtagtggcc aggcacatcc gtgctagtgg 4141 tggggaagaa ccctattata tcacggatag catgctggat aggctttgga ggggaggtcc 4201 aaagcaaagc catggctggt aagcagcccc agcaggccct gcccaaggca gcggcaaagc 4261 aaatagccaa ggaggtagtc aaacaggaga agaaggaacc agtggtgcgt aaaaagaaac 4321 agttttatcc aaatctaagg tttaataata gatctaataa gaaatttgtg aagaaacagc 4381 tagataaaaa tttgaagaaa caaggtcttg aaggaccaag acctagattt gctgtcactg 4441 tttctgctac cattggcaag gttgggccaa ataaaagtca ggggcctgaa ctccaaatat 4501 ctacttttat gcaccccagc ttgatgaaag agccaaatga tggcacaaat tttggtcccc 4561 tacagtcagc agctgcacaa tggggtttgt ggcgcttgaa aagcttgagc gtcacgttta 4621 ctcctcttgt tggtccatca gcagttactg ggtctgtttt ccgcatatcc ctaaacatgg 4681 cacagtcacc tggagccacg tcatggggag gtcttggtgc taggaagcac aaggatgttg 4741 ctgtgggaaa gcagtttact tggaagctac agaagggaga cctcacaggc cccagggaaa 4801 cctggtggct cacagacaca aatgaggagg gagcacaaag ttgtgggcct cttcttgaaa 4861 tccatggcct tggtgaaaca acttctacct acaaggatgc agcatggcct ggagacctct 4921 ttattgttga ggtcaggggt cgctgggagt ttgcaaatta caacagcaaa cctgcattag 4981 gtatgttgga gagagtgact gaaaatattg atgcttcaat tgaagtagct aatggtaata 5041 tgattatgac agttccacag aggtcccaac ttgcaaggca tatgagtgaa aggttcgaga 5101 ggaccacaaa tgcaagtact gttggtgaaa caatatggca gattgtggat gagggtgctg 5161 gcctggttgc agatgttgca cctcccccgt tcacttggtt gattaaaggg gggtggtggt 5221 ttgtcaagaa attgctaggt agatcagcaa atactgatgt tcaatatcta gtctatgcat 5281 cattggcaga cgcccaaaac aacagacctg tagaggcaca aaattacaca aaagtcacac 5341 gacaaacaac actttcttcc acgcaaatta atgcaccaaa tacaggccct aataccacta 5401 cagggtcaat tggaaacaac aaccagcagt ggccggtacc tccgacaggg gcaccggttg 5461 gtgactttta tgtctgtggc aagatgacaa cattgcatat gggtggtcag tctggcattc 5521 aagccacgac tttagtgaat gggatgatat atcgtacaga tcacccagaa tcatcaacaa 5581 ggccaatttc caattgggaa ttcacagttt tggaaaataa cacaattgtt ggtgctggaa 5641 tggggtgtgt gtggtttcgg ggatctgaag tagcagtgtg gacactagat ggccagaagc 5701 tatcaggatg gaacacgcta gatggcgttg gtacaaccca attgacagtc gcctggagac 5761 agcacaacag aacaatttat ggatgggcta atgttgttgc ttggaactct gaagaatggc 5821 acacaaatgc agaacaacca caccagccta tattgaggtt gacatattgg ttagtaaaaa 5881 ttaatgtttt gtctgaacca gaagattttg atgttgtcca aaaatcccca ttggcttatt 5941 tagaagatta cactacagta caatcaagat ctgctatcca aaagcttaac tttcaaacgt 6001 ttcagaaacc tgaaggggga ggcactttgc gggcacaata ctcaacttct cccaggcaag 6061 gggattttgc cgtaatatgg caggttggta gacataattt tgatatgtct accggtaagg 6121 gtacaccagt tgagagtttg agtgattatg tcatgcccca gcagaaagat gcctgtagtg 6181 gcatgtggta tcgtgcttta actagtgttg gaccaagatc agatgttttg acccttcatt 6241 tccatttgcc aatagtggaa aaagatttag ttgagcagat tattgatcaa attcagcatc 6301 gctacagatt gaccccactg gattcggatt cagactcctc tagttctgat tccgatttcg 6361 agcctgaaga tggatttgag aagcttaaaa tccatgaggg ttccaggtcc agtggtcaaa 6421 aattgcgccg aggccacgcc gagtaggacc gagggtacag cgctaaattg attactagag 6481 gtgttaatca ataaatcatt gatttggtga ttgatatgat taatttgaaa ttgaaatttc 6541 cagcagg //