LOCUS EU143843 7348 bp RNA linear VRL 04-OCT-2012 DEFINITION Avastrovirus 3 strain TAstV/AK/98, complete genome. ACCESSION EU143843 VERSION EU143843.1 KEYWORDS . SOURCE Avastrovirus 3 ORGANISM Avastrovirus 3 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; Avastrovirus. REFERENCE 1 (bases 1 to 7348) AUTHORS Strain,E., Kelley,L.A., Schultz-Cherry,S., Muse,S.V. and Koci,M.D. TITLE Genomic analysis of closely related astroviruses JOURNAL J. Virol. 82 (10), 5099-5103 (2008) PUBMED 18321976 REFERENCE 2 (bases 1 to 7348) AUTHORS Koci,M.D., Srain,E., Kelley,L.A., Schultz-Cherry,S. and Muse,S.V. TITLE Direct Submission JOURNAL Submitted (08-SEP-2007) Poultry Science, North Carolina State University, Campus Box 7608, Raleigh, NC 27695, USA FEATURES Location/Qualifiers source 1..7348 /mol_type="genomic RNA" /db_xref="taxon:1239439" /strain="TAstV/AK/98" /organism="Avastrovirus 3" CDS 21..3398 /codon_start=1 /protein_id="ABX46564.1" /translation="MAQAGRGSDAFASLDQRRERQEEQAQTGLDKVFFFQGVVELFNR MKIAYGRTPAWTALMKCNAIYLKDFKTAIGVEGTRYGLFFAEEVTKPTWSPDIGANLM TLGEKACIDAQNAKYERLQASLKTTSALVHQVMEKTREAKENLEKANKIQDQLDKVVE SNKTLHRRIQEKNREKMQEYMVRLHNTQKDRDDWVQRCSRLEQENVNLQKRLKEKENA LISVGWDLLGWIVISVLVFGLISLADAQNLTPPAKIVITPGQAEFMDLAKLEKIQIRK YRLESCELPPEKGCVLYKDYLTTRSVSFLELMAKCSKPDWISESSYNETTLMEECIQI FGAEWCEGKLVDLVPRKCSEQHILVNFMEQIEKTREVVTLIYGKVMSYRLDMWITSIF SLVLAGNKEKLFKMAPFILVAWFLRIPVFLTCVAVNIFPLVSLPFILFQIFMPQFVLI NAFLLWLTLTLTAFYWNEGPKILMEVSYALVYTIGFVLWSLGLAVGVTLKLTMVHQIL MFCVVVATICGTRFACATITVQHPDGTTTKYTRVGKLKTNVVNQCKKMVTTLQTRGVI PATPAKTASIVIVEGKNGTGVGFRFMNYILTAEHVVQGSDIATLKNGSVSVKSKVIKT IPIFESVDNVAVLKLPPELNGVKPIKLAKKVQSDYLTLTAYDPNFQHAVTYTGWCIVD GNWLNNSFDTKFGNSGAPYCDHDGRLVGIHLGTQGVLSQGIVIVDALKNTFQLADQCR PQNFDMDEFLEKVIAGTKVSHAAILKELEELREEVQFLKRKCVTYDDYWLCQTIFGQA KGKTKKTVRGRKHLVTKRALSKGHFMKMRMLTDEEYQNMIEKGFSAEEIREAVNELRE QAWLNYCIDNDIDDEGEDDWYDDMVETDRVNQEIDEAIERAMEDRGEFYQKKSRLTFV EQAMMHLIQVSKERSQTAKLEVQKENEEQLKNMFERCVTDENTPEGTTSVAVLSTEED VRLVEGKIIDFSKAKNIPVDGEIKREIIPGTKCTEISTGPENKKNILKKKDTHMTEGK VETKTSQQPVDVKDDKPVALEQRKPRACKWCGSSQKHDYRECRFQREKRFCVYCAAMH SMFEGHIRSIECANCKKSFPGIEKLEDHVVSGECQKN" /product="non-structural polyprotein" /note="ORF1a" CDS <3383..4936 /codon_start=1 /protein_id="ABX46565.1" /translation="VSKKLVEGPVTTKAPTPVPDWLKIFAWEDDILPPEGKIALPENV ALIGHIPVDKLVSRTKKVQDPLLGLVTPWKQDVYDSTTWTVKAYNKMFEKFHYHDPVD FVEQYAEFVLLCDNMVLREHDYMANSYITPIMSTEKNVNSTPAYPKFQAYDSEAEYLE DCGWQEYLDVVSDPETINHRPLWWCFLKNEVLKKEKIEDSDIRMILCTDPVFTRIGAM FEQDQNNRMKQQTETRSAQVGWTPFFGGLDRRVRRLCGDGDRYFVEMDWTRYDGTIPK PLFWRIRQIRFFFLHDSQKTPKMRCLYNWYVKNLLEKVILLPTGEVCQVKKGNPSGQY STTVDNNMINVWLTTFEISFLFFKQRGRLPTEKELQENCSMICYGDDRLLSIRKGFVE YEPDTVIEMYKNIFGMWVKRNNIKIQDTPEGLSFCGLTIVKSSNGAYVGVPNVNKILS TLENPVRRLPDVESLWGKLVSLRILCENAPSNVKHFLDEQISNVEEFAARENIQLPEV GPDFYSKIW" /product="RDRP" /note="ORF1b; translated through frameshift mechanism" CDS 4964..7141 /codon_start=1 /protein_id="ABX46566.1" /translation="MADKVVVKKTTTRRRGRSNSRSRSRSRSRSRTRTRKTVKIVEKK PEKSILKKIDQAERRDEKQIRRMRKKLQGPPVNSRMTTVVTLGQITGNKDNTLERKHK CFLNPLLMKSQETGQTATPLSVRASQYNLWKLSRLHVRLIPLAGKANILGSVVFLDLE QEANTAGPESVDTIKARPHVEVPIGSKTVWKVHPRSALGPRQGWWNVDPGDSPTDSLG PALNMWTYLQTVNALQSAGGNQTPYTSALFLVEVLVTYEFSNYGPKPALSQMISDSFP PASGSTATLKNTSDGAVAIQLSGAIARKMEEVEPKGRRSNAQTSGVGEVFWAVSTEVV NTVADAIPGWGWLLKGGWFVLRKIFGAANDHNGTYLIYSSVADAQGDNRIYTSVKPTQ LTSSRINLVQLTQPNVNQAAVGGSVGSANSIYLPLPQADDQYTPYFVYNFQGERVSTA ETGTFCLAAIPIAATSSRYNGLISSPSIGYKGDSGAGVSFSLDEASWWNILDVTQTGV IFGQPKLGVGVIQTMKTLKQHIKDYTEPAIKRYYPGTTNLDNNNVLKQRMNLAEGDPV ISMGDTNGRRAALFYRTSDERYLLFFSTPSDPGPEYQDLKMLYFWNWSYSDNKQQFLG HLRTVQFANRDESQPALCDSDDDDLSDVTSLFEQADLGDETDFKFNMSIQTSKHLEDE KNYWKNQCERMMMEKALMGTSQPLVRFEKAGPRADQSSASGHS" /product="capsid precursor" /note="ORF2" ORIGIN 1 ccgaaagtgt tgtcggggcg atggcccagg cgggtcgcgg cagcgatgct tttgcatccc 61 ttgatcaacg ccgggagcgc caagaagaac aggcgcaaac cggccttgac aaggtgtttt 121 tcttccaagg cgtggttgag ttattcaacc gcatgaaaat tgcctatgga aggacaccgg 181 cgtggacagc cctcatgaag tgtaacgcca tatatttgaa agatttcaaa acagcaattg 241 gcgttgaggg tacccgctat gggttattct tcgcagaaga agtgaccaaa ccaacctggt 301 cacccgacat tggagcaaat ttgatgacct tgggcgaaaa ggcttgtata gacgcccaga 361 atgcaaaata tgaaagattg caagcatcac ttaaaacaac cagtgcccta gtgcaccaag 421 tgatggaaaa aactagggag gctaaagaga atttggagaa agctaataag atccaagatc 481 agcttgacaa ggttgttgaa agcaataaga ccttacaccg gaggatacag gagaaaaacc 541 gagagaagat gcaggagtat atggtgaggt tgcataacac gcagaaggat cgtgatgact 601 gggttcagag atgctctagg ctggaacagg agaatgtcaa tctgcagaaa aggttaaagg 661 agaaagagaa tgcgctgata tctgttggat gggatctttt aggctggata gttatttcag 721 tgcttgtatt cggcctgatt tcacttgcag acgcgcagaa cttgactcca ccagccaaga 781 ttgtgataac tccaggacaa gcagagttta tggacctagc taaattggaa aaaatccaga 841 tcagaaagta tcgactggag agttgtgaat taccacctga gaaaggttgc gtgttgtaca 901 aggattacct caccaccagg tcagtaagct tcttggagtt gatggccaaa tgttcaaaac 961 ctgactggat ctcggagagc agttataatg aaacaaccct tatggaagag tgcattcaga 1021 ttttcggtgc agagtggtgt gaaggaaaac ttgttgacct tgtgccaagg aaatgtagtg 1081 aacaacatat tctagttaat tttatggagc aaattgaaaa aactagagaa gttgtaaccc 1141 tcatatatgg gaaggtgatg tcatacaggt tggatatgtg gataacatcc attttcagct 1201 tagttttagc aggtaataag gaaaaattgt ttaaaatggc tccttttatt cttgtggcat 1261 ggtttttgcg tataccagtg tttttgacct gcgtggcagt taacattttt ccgcttgttt 1321 cactgccctt tatattgttt cagatcttta tgccacagtt tgtcctgata aatgctttcc 1381 tcttatggtt aacactcact ttaacagctt tttattggaa tgaggggccc aaaatactta 1441 tggaggtgag ctatgccctt gtgtatacca tcggctttgt tttatggtct cttggattgg 1501 ctgtgggtgt gacgcttaaa ttgacaatgg tacatcagat attgatgttt tgtgttgttg 1561 tcgcaaccat ttgtgggacc agatttgcat gcgcaacaat aacagtgcaa cacccagatg 1621 gaacaaccac aaaatacacc cgggttggta agttaaagac aaatgtagtg aatcagtgta 1681 agaagatggt cacgacactg caaacaagag gcgtaatacc agcaacgcct gcaaaaacag 1741 catccattgt tattgttgag ggaaaaaatg gaacaggtgt cggtttcagg tttatgaatt 1801 atatccttac agcagagcat gtggttcagg gatcggatat agcaacactt aaaaatggca 1861 gtgttagtgt gaaatccaaa gttattaaaa cgatcccaat atttgaaagt gttgataatg 1921 ttgcagtgtt aaaattacca cctgagctta atggcgtgaa acctattaaa ttagcaaaga 1981 aggttcaaag tgactatttg acactgacag cctatgatcc aaattttcaa catgccgtca 2041 cttacaccgg gtggtgtata gtggatggga attggcttaa taattctttt gatacaaaat 2101 ttggaaatag tggtgcacca tattgcgacc atgatggtag gctagttggt atccacctag 2161 gcacacaggg tgttctgtcc caaggcatag tcattgtaga tgcattgaag aatacattcc 2221 agcttgcaga tcagtgtaga ccacagaact ttgatatgga tgagttcctt gagaaagtca 2281 tagcaggaac aaaagtttca cacgcagcga tcttaaaaga actggaagaa cttagagaag 2341 aggtgcaatt tttgaaaaga aaatgtgtca cctacgatga ctactggcta tgccaaacca 2401 tctttgggca ggccaaaggg aagacgaaga aaacagtcag aggccgtaaa caccttgtta 2461 ctaaaagagc tcttagtaag gggcatttta tgaagatgag gatgcttacc gatgaagaat 2521 atcagaacat gattgaaaag ggcttctcag cagaggaaat aagagaggca gtcaatgaac 2581 tccgggaaca agcatggctc aattattgta ttgataatga cattgacgat gaaggtgagg 2641 atgactggta tgatgatatg gtagagacag acagggttaa tcaggagatt gatgaggcta 2701 tagagcgtgc catggaagat cgtggtgaat tctaccaaaa gaagtctcgc cttacttttg 2761 tcgaacaggc catgatgcat ctgattcaag taagtaagga aaggagtcag actgccaagt 2821 tagaagtcca gaaggagaat gaagaacaac taaaaaacat gtttgagcgg tgtgtcacag 2881 atgagaatac acctgagggc accacttcag tagcagtttt gtccacagag gaggatgtta 2941 ggcttgttga agggaaaatc attgacttct ccaaagcaaa aaatattcca gttgacgggg 3001 agataaagag agagataatt cccggaacta agtgcactga gatttctact gggcccgaaa 3061 ataagaagaa catattgaag aaaaaagata cacacatgac tgagggaaaa gttgagacta 3121 aaacatcaca acaaccggtt gatgttaaag atgataaacc cgtagccttg gaacaacgga 3181 agcctagagc ttgtaaatgg tgcggttcat cacaaaaaca cgattaccgg gaatgtcggt 3241 ttcaacgtga aaaacgtttc tgtgtgtatt gtgcagctat gcactcaatg tttgagggcc 3301 acataagatc gatagagtgc gccaactgta agaagagttt cccaggaatt gagaagttag 3361 aagaccatgt ggtcagcgga gagtgtcaaa aaaactagta gaggggcccg tgacaacaaa 3421 ggcccctacc cccgtaccag attggcttaa aatatttgca tgggaagatg acatattacc 3481 acctgaagga aaaattgcct taccagaaaa tgttgcctta attggacaca taccagttga 3541 caaattggtc tcgcgtacca agaaggtcca agaccccctg ttaggccttg taacgccttg 3601 gaaacaggat gtgtatgact caacaacatg gactgtaaaa gcttacaaca aaatgtttga 3661 gaaatttcat taccacgacc cagttgattt tgtagagcag tatgctgagt ttgtgctttt 3721 gtgtgacaat atggtgttga gagagcatga ttatatggca aatagttata tcacaccaat 3781 tatgtcaaca gagaaaaatg tcaacagcac accagcatac ccgaaatttc aggcctatga 3841 cagtgaagcc gagtatctgg aagattgtgg gtggcaagag tacctggatg ttgtgtctga 3901 tccagaaact ataaatcata gacccctgtg gtggtgcttc ctcaagaatg aagttctcaa 3961 aaaagagaaa attgaggata gtgacattcg gatgatactg tgcaccgacc cagttttcac 4021 caggattggg gctatgtttg aacaggacca gaacaacaga atgaaacaac agactgaaac 4081 aagatctgca caggtaggtt ggacaccctt cttcggcggc ttggatcgca gggttcgcag 4141 gttgtgtggt gatggagaca ggtattttgt tgaaatggac tggacgcggt atgatgggac 4201 tataccaaag ccactttttt ggagaattag acagattagg tttttctttc ttcatgactc 4261 ccaaaaaact ccaaaaatgc ggtgtttgta caattggtat gtaaaaaatt tgttggaaaa 4321 agtcatttta ttgccaactg gagaggtctg ccaagttaaa aaaggaaatc cgagtggaca 4381 atattcaaca actgtggata acaacatgat aaatgtctgg ttaacaacat ttgagatttc 4441 atttctcttt ttcaaacagc gtggtagatt gccaacagag aaagaattgc aagagaactg 4501 ctccatgata tgctatgggg atgacagact tctttctatc cgcaaagggt ttgttgagta 4561 tgaacctgat acagttattg agatgtacaa gaacatcttt gggatgtggg taaaaaggaa 4621 taacattaaa atccaagata cacctgaagg gctctctttt tgtggactta caattgtaaa 4681 atcaagcaat ggggcatatg ttggagttcc aaatgtgaac aagatactgt caactttgga 4741 aaacccagtc cgcagactgc cagatgttga gtctctttgg ggtaaattgg tttccctgcg 4801 catattgtgt gaaaatgctc ccagcaatgt taaacacttt cttgatgagc agattagcaa 4861 tgttgaggag ttcgccgcca gagaaaatat acaactgcct gaagtcgggc ccgacttcta 4921 ttccaaaata tggtgagagg aggaccgaaa gaaggtggcg gcgatggccg acaaggtcgt 4981 tgtcaagaag acaactacaa ggcgcagggg taggagcaat tcccgctccc gtagcaggag 5041 taggagcagg agcagaacta ggactagaaa gacagtcaaa attgttgaga aaaagccaga 5101 aaaatccatt ttgaagaaaa ttgatcaggc tgaaagaaga gatgaaaaac aaatcaggcg 5161 aatgcggaaa aaattgcagg ggccaccagt gaattccagg atgacaacag tagtcacact 5221 tggtcagata acaggcaaca aagacaacac cctagagcgg aaacataagt gctttctgaa 5281 tccgctgttg atgaagagtc aggaaactgg tcaaactgca acacccttat ctgttagggc 5341 atcccaatat aatctgtgga agctatccag actccatgtc agacttatac cccttgcagg 5401 aaaagcgaat attttggggt cagtggtgtt cctagatctt gaacaggagg caaacacagc 5461 aggaccagaa tcagtagata ccatcaaggc aagaccccat gttgaagttc ccatagggtc 5521 gaaaaccgtt tggaaagtgc accctagaag cgctctagga cctagacagg ggtggtggaa 5581 tgttgaccct ggtgacagcc caactgactc ccttgggcca gcacttaaca tgtggaccta 5641 cctgcaaact gtcaatgcgc tccagagcgc tgggggcaac caaacgcctt acaccagtgc 5701 acttttcctt gtggaggtct tggttaccta tgagttttca aattatggtc caaagcctgc 5761 actgtcccag atgatatcgg atagctttcc accagcctcc ggttccactg caacccttaa 5821 aaacaccagt gatggggctg tagcaataca actctcagga gctattgccc gaaagatgga 5881 agaggttgag cccaagggta ggcgctcaaa cgcacaaaca tcaggtgtcg gtgaagtgtt 5941 ctgggcagtg tccactgaag tagtcaatac agtagcggat gccataccag gctggggttg 6001 gcttctgaaa ggtggctggt ttgtcctcag gaaaatcttt ggggccgcga atgaccacaa 6061 tggcacctac ttgatatact cttcagtggc agatgcacaa ggtgacaaca ggatatacac 6121 atcagtgaaa ccgacacagt tgacatcaag caggatcaac ctcgtccaac tcactcagcc 6181 caatgtgaac caagcggcag taggtggcag tgttggctcg gcaaattcca tctatttgcc 6241 attaccacaa gcagatgacc aatacacacc ctattttgtt tataacttcc aaggggagag 6301 ggtgtcaact gctgagactg ggacattttg cctggcggcc ataccaattg cagccacgtc 6361 tagtaggtat aatggtctga tctctagtcc atcaattggc tacaagggtg atagcggtgc 6421 aggagtatca ttctcactag atgaagcatc atggtggaat atactggacg tgacccagac 6481 tggtgtgatc tttggacaac caaaattagg agttggtgtc atacagacaa tgaaaactct 6541 taagcaacac atcaaggatt atacagagcc tgcaataaag aggtattacc ctggtacaac 6601 taaccttgac aataataatg tgttgaaaca gagaatgaat ttggcagagg gtgacccagt 6661 catttcaatg ggtgacacga atggcaggag agctgcactt ttttatagga ctagtgatga 6721 aagatatctt ttatttttct caactccatc agatccgggg ccagaatacc aggatttgaa 6781 aatgttgtat ttttggaact ggtcttattc tgacaacaaa cagcaatttt tgggccacct 6841 tagaacagtg cagtttgcaa accgggatga aagccagcca gccctctgcg atagtgatga 6901 tgatgatctc tctgatgtaa catcactttt tgagcaggct gatttggggg atgagacaga 6961 cttcaaattt aatatgtcca tccaaacctc taaacatctt gaggatgaga aaaattactg 7021 gaaaaaccag tgtgagagga tgatgatgga gaaggccctt atgggcacct ctcaacctct 7081 cgtccggttt gagaaagctg gacctagggc agatcaatct tctgccagtg gtcattccta 7141 aatggccgca ctttctctgc ggtggaaatg gaaatcacca ttccacctaa gatgattagc 7201 cgatccaacg gaaatcaccc gttgggtggt gcgtggttca cgcatcggga aatcaacccg 7261 gtgtattacc cgcacttccg gctcaacagt tttttaaaac tgatataaat ttataaaaat 7321 tttattagca tttaaaaaaa aaaaaaaa //