LOCUS EF206691 6649 bp RNA linear VRL 19-APR-2007 DEFINITION Avian hepatitis E virus from USA, complete genome. ACCESSION EF206691 VERSION EF206691.1 KEYWORDS . SOURCE Avian hepatitis E virus ORGANISM Avian hepatitis E virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Hepeviridae; unassigned Hepeviridae. REFERENCE 1 (bases 1 to 6649) AUTHORS Billam,P., Sun,Z.F. and Meng,X.J. TITLE Analysis of the complete genomic sequence of an apparently avirulent strain of avian hepatitis E virus (avian HEV) identified major genetic differences compared with the prototype pathogenic strain of avian HEV JOURNAL J. Gen. Virol. 88 (PT 5), 1538-1544 (2007) PUBMED 17412984 REFERENCE 2 (bases 1 to 6649) AUTHORS Billam,P., Sun,Z.F. and Meng,X.J. TITLE Direct Submission JOURNAL Submitted (05-JAN-2007) Department of Biomedical Sciences and Pathobiology, College of Veterinary Medicine, Virginia Polytechnic Institute and State University, 1410 Price's Fork Road, Blacksburg, VA 24060, USA FEATURES Location/Qualifiers source 1..6649 /mol_type="genomic RNA" /db_xref="taxon:172851" /country="USA" /organism="Avian hepatitis E virus" /note="avirulent strain" CDS 25..4617 /codon_start=1 /protein_id="ABM92902.1" /translation="MDVSQFAESKGVKTALEAAALAAANTALRNARVVTPYLTQQQTK NLLELFRGAQLRFEPRDNWAHPVQRVVHDALEQYVRRAAGPNCLEVGAHPRSINRHQA SHRCFLPPVGRDEQRWQVAPRRGLCNLIRRALLNGVKVAREFCQLGFGACSHQCEVGI ALYSLHDMRPADVACAMARHNMRTMYIVLHLPEEAMLPPGTYSNKFYNTVNTADKCII TYADDSCAGYVHKREVLQDWITTTGVSGRHPMLVERVRAIGCHFVLLCTATQPCPMPY TPYPSSSTVYVRNVYGPALGAGLFTPKCCVDATFYPVPRRVWQRLMMFGTTLDDDAFC CSRLLTYLRGISTKVTVGNIVANEGWQPEEQQLTAVAIAAYLTVCHQRWVRTQGIARG VRRLQAEHAQQFWFKVWELFTNTGTVPGYSAGFYRQLATWISGGLTIDFERRVFDKRV KCGCCCVCERRPADPGCLCIDDFPDGANGLVKLKKWPIRAGTKSAVSRWAQVRVRADS TEDLIDLSVPKLLTLKELAAAAIRKQPSAPPSLHILDRRPVGDPRHPVSSVSPAVSAG PGPAPPNEPVEPVQGPETDGPGVGEPQSDLTPTHGATNMPLPPQRGQEEVLAVLPSGA RVIVGNLLDVAADWLVNPANRDHQPGGGLCGMFHRRWPHLWPVCGEVQDLPTGPVIFQ QGPPKVIHAPGPDYRTNPDPDGLRRVYAVVHQAHGTVASPLISAGIYRAPARDSFEAW AATARDGDLLVVQRSMAQHIRDFVLNEGRHRPRELQVDRAMADMVNYGLATEPEPYNE LVKGVEVAPMTVKYALIAGVPGSGKSSSVDHRGAVVITPTKTLAREWSARGATAITPH VAASAAPEGRVIVDEAYAIPPHLLVASLRRARDVVMLGDPHQIPALDFDGRCLTSAVD LGLQPTSWRTVSHRCPWDVCMFLRTDYPTITTTSKVLRSVVFTGETIGQKIVFTQVAK QSNPGSITVHEAQGSTFDQTTIIATLDARGLIASSRAHAIVALTRHRERCSVIDVGGV LVEIGVTDAMFNNIEMQLVRPDAAAPAGVLRAPDDTVDGSLDIPPAHTDVAAVLTAEA IGHAPLELAAINPPGPALEQGLLYMPARLDGRDEVVKLQLSDTVHCRLAAPTSRLAVI NTLVGRYGKATKLPEVEYDLMDTVAQFWHHIEPINPSTLEYAEMCEAMLSKGQDGSLI VHLDLQDADCSRITFFQKDCAKFTLDDPVAHGKVGQGISAWPKTLCALFGPWFRAIEK HLVAGLPPGYYYGDLYTEADLHRSVLCAPAGHLVFENDFSEFDSTQNNVSLDLECELM RRFGMPDWMVALYHLVRSYWLLVAPKEALRGCWKKHSGEPGTLLWNTVWNMTVLHHVY EFERPSVLCFKGDDSVVVCESVHARPEGVSLVADCGLKMKDKTGPCGAFSNLLIFPGA GVVCDLLRQWGRLTDKNWGPDIQRMQDLEQACKDFVARVVTQGKEMLTIQLVAGYYGV EVGMVEVVWGALKACAAARETLVTNRLPVLNLSKED" /product="nonstructural polyprotein" /note="encodes functional domains methyltransferase, helicase, and RdRp" CDS 4651..4914 /codon_start=1 /protein_id="ABM92904.1" /translation="MCLSCQFWCLECQESGVGCRCVDCCSCLQCAAGCQGAPKRSQPE VGVVSAAVTTQPSGVLNNAPREPSAPPLSQTLSPRQVLARYQM" /product="cytoskeleton-associated phosphoprotein" CDS 4704..6524 /codon_start=1 /protein_id="ABM92903.1" /translation="MSLRRLLLMLAMCCGVSRGSQTLPAGGRRGQRRRDNSAQWSTQQ RPEGAVGPAPLTDVVTAAGTRTVPDVDQAGAVLVRQYNLVTSPLGLATLGSTNALLYA APVSPLMPLQDGTTSNIMSTESSNYAQYRVQGLTVRWRPVVPNAVGGFSISMAYWPQT TSTPTSIDMNSITSTDVRVVLQPGSAGLLTIPHERLAYKNNGWRSVETVSVPQEDATS GMLMVCVHGTPWNSYTNSVYTGPLGMVDFAIKLQLRNLSPGNTNARVTRVKVTAPHTI KADPSGATITTTAAARFMADVRWGLGTAEDGEIGHGILGVLFNLADTVLGGLPSTLLR AASGQYMYGRPVGNANGEPEVKLYLSVEDAVNDKPIMVPHDIDLGTSTVTCQDYGNQH VDDRPSPAPAPKRALGTLRSGDVLRITGSMQYVTNAELLPQSVAQGYFGAGSTMMVHN LITGVRAPASSVDWTKATVDGVQVKTVDASSGSNRFAALPAFGKPAVWGPQGAGYFYQ YNNTHQEWIYFLQNGSSVVWYAYTNMLGQKSDTSILFEVRPIQASDQPWFLAHHTGGD DCTTCLPLGLRTCCRQAPEDQSPETRRLLDRLSKTFPSPP" /product="capsid protein" /note="structural protein" ORIGIN 1 gcatgacccc atgccagggt aagaatggac gtctcgcagt ttgcagagtc caagggggtt 61 aagactgcac tagaagcggc cgctctagct gcagccaata ctgccctgcg aaatgcgcgg 121 gtggtaaccc cctaccttac ccaacagcag actaagaatc tgctggagct attccgcggt 181 gcccagttgc ggtttgagcc acgcgataac tgggcgcacc ctgtgcagcg ggtcgtgcat 241 gatgcccttg agcagtatgt acgccgcgca gcggggccta actgcctgga ggtcggcgct 301 catccacgct ccattaatag gcatcaagcc tcgcaccgtt gcttcttacc cccggttggg 361 cgtgatgagc agcggtggca ggttgcaccg cggaggggtc tttgcaattt aatccgtcgc 421 gcgttgctta atggtgttaa ggtggcgcgt gagttttgtc agttagggtt tggcgcctgc 481 tctcaccagt gtgaggtggg catagccctc tatagcttgc atgacatgcg ccctgcggac 541 gtggcgtgtg cgatggcccg tcacaacatg cgcaccatgt atattgtgtt gcatctacct 601 gaggaagcaa tgctgccacc agggacctac tcaaataagt tttacaacac ggtgaataca 661 gcggataaat gcattataac gtacgccgat gactcttgtg cggggtatgt gcacaagcgc 721 gaagtattgc aggattggat aacgacaacg ggcgtttctg gtcggcatcc tatgttggtt 781 gagcgggtta gggctatagg ttgccatttt gtgctgttgt gtactgcaac tcagccctgc 841 cccatgccgt atacgcctta cccgtcctca agcaccgtgt acgtcaggaa tgtttatggg 901 cccgcgttgg gtgctggtct ttttacacct aagtgttgtg ttgatgctac gttctaccct 961 gtgcccaggc gtgtgtggca gcggttgatg atgtttggca ccacacttga tgacgacgcc 1021 ttctgctgct cgcgcctgtt aacttaccta cgtgggattt caaccaaggt gactgtgggt 1081 aacattgtgg ccaatgaggg ttggcagccg gaggagcagc aacttacggc tgttgccata 1141 gctgcatacc tcactgtctg tcatcagaga tgggtgcgca cacagggtat agcccgaggt 1201 gtgaggcgct tacaggctga gcatgcacag caattttggt tcaaagtctg ggagttgttc 1261 accaataccg gtactgtgcc cgggtattcg gctgggtttt accgccagct cgccacatgg 1321 attagcggcg gccttaccat tgattttgag cggcgtgttt tcgacaagcg tgtgaagtgt 1381 gggtgctgct gcgtttgtga gcgccgccct gctgatcccg ggtgcttgtg tatcgacgat 1441 ttccctgatg gagcaaatgg gctagtgaag ctgaagaagt ggccgatacg ggccggcacg 1501 aagtctgcag tcagcaggtg ggcccaggtc agggttcggg ctgacagcac ggaggatttg 1561 attgatttaa gtgtgcccaa attgctcaca cttaaggagc ttgccgccgc agcaatacgt 1621 aaacaaccgt ctgctccgcc ttcattacat attctagacc gccgacccgt aggtgatccc 1681 aggcaccctg tcagcagcgt atcaccggct gtttcggccg gtcctgggcc ggcacctccg 1741 aatgagcccg ttgaacccgt tcagggcccg gagactgatg gacctggggt tggtgagcct 1801 caatctgact tgactccgac gcacggggct actaacatgc ccctgccacc acagcgtggt 1861 caggaggagg tccttgctgt gctgccatct ggggcacgtg tcatcgtagg taatttattg 1921 gacgtcgccg ccgactggct tgttaacccg gccaatcgag atcatcagcc tgggggcggg 1981 ttgtgcggca tgttccatcg ccgttggccg catttgtggc ctgtctgtgg cgaggtccag 2041 gatttgccca cgggcccggt aatctttcaa caggggccac ctaaggtcat tcacgccccc 2101 ggcccggatt atcgtactaa tccagacccc gacggcctcc gcagggtgta cgccgtcgta 2161 caccaggcgc atggtacggt agccagcccc ttaatcagtg ccgggatata ccgggcgccg 2221 gcccgggatt catttgaagc ttgggcggct actgcccgtg atggtgattt gctggttgtg 2281 cagcgttcga tggcccagca cattagggac tttgtattga atgagggccg tcacagacct 2341 agggagcttc aagttgatcg agccatggct gacatggtta actatgggct ggcaaccgaa 2401 cccgagccat ataacgagct cgtgaagggc gttgaggttg cgccaatgac tgtgaaatac 2461 gcgctcatag ctggtgtccc gggcagcggc aagtcatcgt ctgtcgacca tcgtggggct 2521 gttgttatca cacccaccaa aacgctggcg cgtgagtggt ctgcgcgcgg ggccacggct 2581 attacacctc atgtagcagc gagtgcagcc cccgagggca gggtaattgt ggatgaggcg 2641 tatgctatcc caccgcactt gctcgtggcg tccctccgcc gggcgcgcga tgttgttatg 2701 ttaggggacc cgcaccagat accagcactg gattttgacg ggcgttgttt aacgagcgcc 2761 gttgatcttg ggctgcagcc taccagttgg cgcactgtat cccatcgctg cccttgggat 2821 gtttgcatgt tcctgcgcac cgactatccg actatcacta cgaccagcaa agttttgcgg 2881 tctgtcgtgt ttaccggtga gaccattggc caaaagatag tgttcactca ggtggccaag 2941 cagtcgaacc ccgggtcgat aacggtccat gaggcgcagg gcagcacttt tgatcagacc 3001 accataattg ccacgttaga cgctcgcggc cttatagctt catctcgcgc gcatgccata 3061 gtcgcgctga ctcgccatcg ggagcgctgt agtgtgattg atgtcggtgg ggtgctggtc 3121 gagattgggg ttaccgatgc catgtttaat aacattgaaa tgcagcttgt gcggcctgat 3181 gctgcagccc ctgccggggt gttacgagcc ccagatgaca ccgtggatgg ctcgttggat 3241 atacccccgg cccacaccga tgtggcggcg gtgttaacag ctgaggcaat tgggcatgcc 3301 cccctcgagc tggctgccat aaatccaccc gggcctgcgt tagagcaggg cctgttatat 3361 atgccagcca gacttgatgg gcgtgatgag gttgtcaagc tccagctgtc ggacactgtg 3421 cactgtcgtt tagctgcacc tactagccgc cttgcggtga ttaacacgct ggttgggcgg 3481 tatggtaaag ctaccaagtt acctgaggtt gagtatgact taatggatac tgttgcgcag 3541 ttctggcacc atattgagcc aattaaccct tcaacattgg agtatgcgga gatgtgcgag 3601 gccatgctca gcaagggcca ggacgggtcc ctgattgtac atctggacct gcaggacgcc 3661 gactgttccc gcataacatt tttccagaag gattgcgcca aatttacgtt ggacgatccc 3721 gttgcacatg gtaaagtggg acaggggata tctgcgtggc ccaaaacttt gtgtgcactt 3781 tttggcccct ggttccgggc catagagaaa caccttgtgg ctgggctgcc cccgggttat 3841 tattatggcg acctgtacac agaagccgat ctgcaccgtt ctgtgctttg tgcgcctgcc 3901 ggtcatcttg tttttgagaa tgatttttca gagtttgact caacacaaaa taatgtgtcc 3961 ctcgatcttg aatgcgaact gatgcgtagg ttcgggatgc ctgattggat ggtagctctt 4021 taccatctag tccgatcata ttggctgttg gtggctccga aagaagccct tcgtggttgt 4081 tggaagaaac actctggtga accgggcact cttttgtgga atacagtctg gaatatgacg 4141 gtgttacatc atgtctacga gttcgagcgg ccgagcgtgt tgtgttttaa aggcgatgac 4201 agtgttgttg tctgcgaatc ggtgcacgcc cgcccagagg gtgttagtct tgtagcagat 4261 tgtgggttaa agatgaagga caagaccggc ccgtgtggag ctttttccaa cctgttgatt 4321 ttcccgggag ctggtgttgt ttgtgatctg ttacgacagt ggggccgctt gactgataag 4381 aactgggggc ccgatattca gcgtatgcag gaccttgagc aagcgtgcaa ggactttgtc 4441 gcacgtgttg tgactcaggg taaggagatg ttaaccatcc agcttgtggc gggttactat 4501 ggcgttgagg tcggcatggt tgaagtagtt tggggggcct tgaaggcttg cgccgcagcc 4561 cgcgagaccc tagtgaccaa caggttaccg gtactaaacc tatctaagga ggactgaaca 4621 aataacaatc attatgcagt ctgcgcgtcc atgtgcctca gttgtcagtt ctggtgtttg 4681 gagtgccagg aaagtggggt gggatgtcgc tgcgtagatt gttgctcatg cttgcaatgt 4741 gctgcggggt gtcaaggggc tcccaaacgc tcccagccgg aggtaggcgt ggtcagcgcc 4801 gccgtgacaa ctcagcccag tggagtactc aacaacgccc cgagggagcc gtcggccccg 4861 cccctctcac agacgttgtc accgcggcag gtactcgcac ggtaccagat gtagatcagg 4921 ccggcgctgt gctggtgcgc cagtacaatc tcgtgactag cccgcttggc ctggccaccc 4981 tcggtagcac caacgcttta ctctatgctg caccggtttc gccgttaatg ccacttcagg 5041 acggcacgac gtctaatatt atgagcacgg agtctagcaa ctatgctcag taccgtgtgc 5101 agggcctgac tgtccgttgg cgtccagttg tgccaaatgc ggtaggtggc ttttccataa 5161 gcatggccta ctggccccag acgacgtcca cccccacaag cattgacatg aattctatta 5221 cgtccactga cgttcgagtg gtgctccaac cgggctctgc tggtttgctg accataccac 5281 acgagcgttt ggcgtataag aataatggct ggcggtccgt tgaaactgta tctgtcccgc 5341 aggaggatgc tacgtctggc atgctcatgg tttgtgtcca tgggaccccc tggaatagct 5401 acaccaatag tgtttacacc gggccgcttg gcatggttga ttttgccata aagttacagt 5461 tgcggaatct atcgcccggt aatacgaatg ccagggttac ccgtgtgaag gtgacggctc 5521 cacatactat caaggccgat ccatctggtg ctacgataac aacgacagcc gcggcaaggt 5581 ttatggcgga tgtacgttgg ggcctgggta ctgccgagga tggtgaaatt ggtcatggca 5641 tccttggtgt tctgttcaac ctggcggata cagttttagg tggcctgccc tcgacactgt 5701 tgcgagcagc gagtggtcag tatatgtacg gtcggcctgt ggggaacgcg aatggtgaac 5761 ctgaggtgaa actgtatctg tcggtagagg atgccgttaa tgataaacct attatggttc 5821 cccatgacat cgatcttgga actagcaccg tcacttgcca ggactatggg aaccagcatg 5881 tggatgaccg cccgtccccg gctccggctc ccaaacgggc tttgggtacc ctgaggtcag 5941 gggacgtgtt gcgtatcacc ggctctatgc agtatgtgac taatgctgag ctattaccac 6001 aaagtgtggc gcaggggtac tttggggccg gtagcaccat gatggtgcat aatttgatta 6061 ctggtgtgcg tgcccctgct agttcggtgg attggacgaa ggcaacggtg gatggagtcc 6121 aggtgaagac cgtcgatgct agttctggga gcaacaggtt tgctgcatta cctgcatttg 6181 gcaaaccagc tgtatggggg ccccagggcg ctgggtattt ctatcagtat aacaacaccc 6241 accaggagtg gatttatttc ctccaaaatg gcagctctgt ggtttggtat gcatacacca 6301 acatgttggg ccagaaatca gatacatcta tcctctttga ggtccggcca atccaggcta 6361 gtgatcagcc ttggtttttg gcacaccata ctggtggcga tgattgcacc acttgtttgc 6421 cattgggact aagaacatgt tgccgtcagg cgccagaaga ccagtcacct gagacgcgcc 6481 ggcttctaga ccggcttagt aaaacattcc cctcaccacc ttgatgctgt ggttttgggg 6541 ccttaggttg atctctgtat ttgggcgtaa ttgcccctat gtttaattta ttgtgatttt 6601 tatgactttt gtttgattat ttatgaaatc ctcccatctc gggcatagt //