LOCUS KT156671 5697 bp DNA linear VRL 14-MAR-2016 DEFINITION Avian leukosis and sarcoam virus Fu-J1 strain, complete genome. ACCESSION KT156671 VERSION KT156671.1 KEYWORDS ALV-J associated; defective virus; truncated v-fps oncogene. SOURCE Avian leukosis and sarcoma virus ORGANISM Avian leukosis and sarcoma virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 5697) AUTHORS Wang,Y., Zhao,P., Chang,S., Li,J. and Cui,Z. TITLE Identification of ALV-J associated acutely transforming virus Fu-J JOURNAL Unpublished REFERENCE 2 (bases 1 to 5697) AUTHORS Wang,Y., Zhao,P., Chang,S., Li,J. and Cui,Z. TITLE Direct Submission JOURNAL Submitted (15-JUN-2015) College of Animal Science and Veterinary Medicine, Shandong Agricultural University, Daizong Street 61#, Tai'an City, Shandong Province 271018, China FEATURES Location/Qualifiers source 1..5697 /mol_type="genomic DNA" /country="China" /collection_date="01-Jan-2011" /host="chicken" /note="ALV-J associated acutely transforming virus carrying truncated v-fps oncogene" /db_xref="taxon:1806567" /isolate="Fu-J1" /organism="Avian leukosis and sarcoma virus" repeat_region 1..325 /rpt_type=long_terminal_repeat /note="5' LTR" gene 622..5053 /gene="v-fps" /note="gag-fps-env fusion transcript" CDS 622..4350 /codon_start=1 /protein_id="AMP18893.1" /gene="v-fps" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLILGALKAAREEQATSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPQPQEHTSTSAAAGTWRHTQASESRHRL PHCSAAPSHQDHSAMGFGPELWCPKGHSELLRLQDSELRLLELMKKWMSQRAKSDREY AGMLHHMFSQLEKQEGLGHLRATDHSSQIGESWWVLASQTETLSQTLRRHAEELAAGP LAKLSILIRDKQQLRKAFSEQWQQLSQEYARTTQQEMEKLKAQYRSLVRDSTQAKRKY QEASKDKEREKAKEKYVRSLWKLYALHNQYVLAVRAAALHHHHHYQRALPTLHESLYS LQQEMVLVLKEILGEYCSISSLVQEDVLAIHQEVAHAVEMIDPATEYSSFVQCHRYDS EVPPAVTFDESLLEETESLEPGELQLNELTIESVQHSLTSIEEELLASREAVSSKEQR VWELQAELRGEELALSPGERVHLLGKRQGLQEAQQQLQGLVCAQAKLQAQRDMLANKL AELGSEEPPPALPLQEDRQSVCSTDQERSGVTALETIKNHISGIFSPRFSLPPPVPLI PEVQKPLCQQAWYHGAIPRSEVQELLKCSGDFLVRESQGKQEYVLSVLWDGQPRHFII QAADNLYRLEGDGFPTIPLLIDHLLQSQQPITRKSGIVLTRAVLKDKWVLNHEDVLLG ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILKQYNHPNIVRL IGVCTQKQPIYIVMELVQGGDFLSFLRSEGPHLKMKELIKMMENAAAGMEYLESKHCI HRDLAARNCLVTEKNTLKISDFGMSRQEEDGVYASTGGMKQIPVKWTAPEALNYGRYS SESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLEPPEQCPEERPGEDTLA AVERLFLLSNDTCVRGYYFCCPRYFLDLWGQGLARHPE" /product="gag-fps-env fusion protein" /note="oncogene" repeat_region 5373..5697 /rpt_type=long_terminal_repeat /note="3' LTR" ORIGIN 1 tgtagtctta tgcaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggagaa 61 agaaggcact gtacacgttg attggtggaa gtaaggtggt atggtcatgg tgtgatcgtg 121 ccttattagg aagacaacag acgggtcaga catggattgg acgatcccct tagttccgcg 181 ttgcagagag attgtattta agtgcctagc ttgatacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gttgatggcc gggccgtcga ttccctgacg attacgaaca 301 cctgcatgaa gcggaaggct tcatttggtg accccgacgt gatagttagg gaatagtggt 361 cggccaccgg cggcgtggcg atcctgccct catccgtccc gcttaacggg gagcgggcga 421 tgaccctagt agagggggct gcggcttagg agggcagaag ctgagtggcg tcggagggag 481 ctctactgca gggagcccac ataccctacc gagcactcag agggtcgttg gaagacgagg 541 aggaagcccg acgactaagt ggtccgcacc aggcgcggtt ccggttgctc tgcgtgactc 601 tggtcgccct gtggatcaag catggaagcc gtcataaagg tgatttcgtc cgcgtgtaaa 661 acctattgcg ggaaaacctc tccttctaag aaggaaatag gggccatgtt gtccctgtta 721 caaaaggaag ggttgcttat gtccccctca gacttatatt ccccggggtc ctgggatccc 781 attaccgcgg cgctctccca gcgggctatg gtgcttggga aatcgggaga gttgaaaacc 841 tggggattga ttttgggggc attgaaggcg gctcgagagg aacaggctac atctgagcaa 901 gcaaagtttt ggttgggatt agggggaggg agggtctctc ccccaggtcc ggaatgcatc 961 gagaaaccag caacggagcg gcgaatcgat aagggggagg aagtgggaga gacaactgtg 1021 cagcgagatg cgaagatggc gccggaggaa acggccacac ctaaaaccgt tggcacatcc 1081 tgttatcatt gcggaacagc tattggctgt aattgcgcca cagcctcggc tcctcctcct 1141 ccttatgtgg ggagtggttt gtatccttcc ctggcggggg tgggagagca gcagggccag 1201 gggggtgaca cacctcgggg ggcggaacag ccgagggcgg agccagggca tgcgggtcag 1261 gcccctggac cggccctgac tgactgggca aggatcaggg aggagcttgc gagtacaggt 1321 ccgcccgtgg tggccatgcc tgtagtgatt aagacagagg gacccgcctg gacccctctg 1381 gagccaaaat tgattacaag actggctgat acggtcagga ccaagggctt acgatccccg 1441 attactatgg cagaagtgga agcgcttatg tcctccccgc tgctgccgca tgacgtcacg 1501 aatttaatga gagttatttt aggacctgcc ccatatgcct tatggatgga cgcttgggga 1561 gtccaactac agacggttat agcggcagcc actcgcgacc cccgacaccc agcgaatggt 1621 caagggcgag gggaacggac taatttggat cgcttaaagg gcttagctga tgggatggtg 1681 ggcaacccgc agggtcaggc cgcattattg agaccccagc cccaggaaca caccagcacc 1741 agcgctgcag cggggacctg gcggcacact caggcttcgg agtcgcggca caggctgccc 1801 cactgctctg cagccccatc ccaccaggat cacagtgcca tgggctttgg gccggagctg 1861 tggtgcccga aggggcacag tgagctgctg cggctgcagg acagcgagct gcgcctcctg 1921 gagctgatga agaagtggat gtcacagcgt gccaagagcg accgggagta cgcggggatg 1981 ctgcaccaca tgttctctca gctggagaaa caggagggcc tgggacatct ccgtgccacc 2041 gaccacagca gccagatcgg ggagtcgtgg tgggttctgg caagccagac tgagacactg 2101 agccagacgc tgcggcggca cgcggaggag ctggcagcgg ggccgctggc caagctgagc 2161 atactgatcc gtgacaagca gcagcttcgc aaggccttca gtgagcagtg gcagcagctc 2221 agccaggagt acgcccggac cacacagcag gaaatggaga agctgaaggc acagtaccgc 2281 agcctggtgc gtgacagcac ccaggccaag cgcaagtacc aggaggccag caaagacaag 2341 gagcgggaaa aggcgaagga aaagtacgtg cgcagcctgt ggaagctcta tgccctgcac 2401 aaccagtacg tgctggctgt gcgggcggct gcgttgcacc accaccatca ctaccagcgt 2461 gctctgccca ccctgcacga gtccctctac agcctgcagc aggagatggt ccttgttctg 2521 aaggagattc ttggggagta ctgtagcatc agcagtctgg tgcaggagga cgtgctggcc 2581 atccaccagg aggttgccca cgccgtcgag atgatcgacc ccgccactga gtacagcagc 2641 tttgttcagt gccacaggta cgactctgag gtaccaccgg cagtgacctt tgatgagagc 2701 ttgctggagg agacagagag cctggagcca ggggagctgc agctgaatga gctgaccatc 2761 gagagcgtgc agcactccct gacatccatt gaggaggagc tgttggccag cagggaggca 2821 gtgagcagca aggagcagcg ggtgtgggag ctgcaggctg agctgcgggg cgaggagctg 2881 gcactgagcc ccggggagcg ggtgcacttg ctgggcaagc ggcaggggct gcaggaggcc 2941 cagcagcagc tgcagggctt ggtctgtgcc caggccaagc tgcaggcaca gcgggatatg 3001 ctggccaaca agctggcaga gctgggctct gaggagcccc ctcccgcctt gcccctgcag 3061 gaggaccggc agtcagtgtg ctccacggat caggagcgca gtggggtgac tgcgctggag 3121 accatcaaga accacatctc gggcatcttc agtcccaggt tctcgctgcc acctcccgtg 3181 cccctcatcc cggaggtgca gaagccgctg tgccagcagg cctggtacca cggggccatc 3241 ccgcgctcgg aggtgcagga gctgctgaaa tgcagcgggg acttcctggt gcgggagagc 3301 caggggaagc aggagtatgt gctcagcgtg ctgtgggatg ggcagccccg gcacttcatc 3361 atccaggctg ctgacaacct gtacaggctg gaaggcgatg gctttcccac catcccgctg 3421 ctcatcgacc acctgctgca gagccagcag cccatcaccc gcaagagcgg catcgtcctg 3481 accagagccg tgctcaagga caagtgggtg ctcaaccatg aggacgtgct gctgggggag 3541 cgcattggcc gggggaactt cggggaggtg ttcagcggcc gcctgcgtgc tgacaacacc 3601 cccgtggcgg tgaaatcctg ccgggaaacc ctgccgcccg agctgaaggc caagttcctg 3661 caggaagcca ggatcctcaa gcagtacaac catcccaaca tcgtccggct catcggcgtc 3721 tgcacccaga agcagcccat ttacatcgtc atggagctgg tgcagggagg ggacttccta 3781 agcttcctgc gcagcgaggg gccccacctg aagatgaagg agctgatcaa gatgatggag 3841 aatgccgcgg cgggcatgga gtacctggag agcaagcact gcatccacag ggacctggct 3901 gcccgcaact gcctggtgac agagaagaac accctgaaaa tcagcgactt tgggatgtcg 3961 cggcaggagg aggatggtgt ctatgcctcc acggggggca tgaagcagat ccccgtgaag 4021 tggactgccc ccgaggctct gaattacggc cggtacagct cggagagcga cgtgtggagc 4081 tttgggatcc tgctgtggga agccttcagc ctgggcgccg tgccctacgc caacctcagc 4141 aaccagcaga cgcgcgaggc catcgagcag ggcgtgcggc tggagccccc ggagcagtgc 4201 cccgaggaaa gacccggaga agacaccctt gctgccgtcg agaggttatt tcttctttca 4261 aatgatactt gtgtgcgtgg ttattatttc tgttgtccca ggtattttct tgatttgtgg 4321 ggacagggct tggcaaggca tcccgagtaa tgccttggga gggccctgtt atctaggaca 4381 attgactatg ctctctccta actttaccac ctggatgacg tatgggccga acattacggg 4441 tcaccgccgt agcaggcgct cggtgagtca tctctcgtct gactgcagtg acgaggtaca 4501 gctatggagt gcgacagccc ggatatttgc ctctttcttt gctcctggtg tagccgcagc 4561 acaggcctta agggagattg aacgcttggc atgttggtcg gttaagcaag caaatttaac 4621 atcattaata ttgaatgcga tgctggagga catgaacagc atccggcacg cggtgttgca 4681 gaatcgagca gccatcgatt tcttactcct ggcacagggg cacggatgtc aagacgtaga 4741 agggatgtgt tgcttcaatc tcagcgatca cagtgagtcc attcacaagg cgctccgagc 4801 catgaaggaa catacagaga agatacgggt ggaagacgat cccatagggg attggtttac 4861 gcgcacgttt ggtagttttg gagggtggct cgcgaaaggt gttaagacgc tactgtttgc 4921 attgcttgtc atagtctgtc tattagctat cattccatgt ataatcaagt gcttccagga 4981 ttgtctatcg agaacaatgt atcaattcat ggatgaacgc ataagatatc atagaattag 5041 ggagcaactg taggttccga acgcgatgtg acgggaggct gcgagggata ttcggaggaa 5101 taggagaatg cgaatcgggc tgtaacgggg taaggcttga ctgaggggac tgtagcatgt 5161 ataggcgctg agcggggctt cggttgtacg cggataggaa tcccctcagg acaattctgc 5221 ttgaaatgtg atggcacctt cctgttttgc ccctagacta ttcaagttgc ctctgtggat 5281 taggactgga gacagctcgg atggtctggc ggccaaatag agcaagctag atagatagct 5341 gcgaaatacg ctttcgcata gggaggggga gatgtagtct tatgcaatac tcttatgtaa 5401 cgatgaaaca gcaatatgcc ttataaggag aaagaaggca ctgtacacgt tgattggtgg 5461 aagtaaggtg gtatggtcat ggtgtgatcg tgccttatta ggaagacaac agacgggtca 5521 gacatggatt ggacgatccc cttagttccg cgttgcagag agattgtatt taagtgccta 5581 gcttgataca ataaacgcca ttttacctcc caccacattg gtgtgcacct gggttgatgg 5641 ccgggccgtc gattccctga cgattacgaa cacctgcatg aagcggaagg cttcatt //