LOCUS KT156672 6542 bp DNA linear VRL 14-MAR-2016 DEFINITION Avian leukosis and sarcoam virus Fu-J2 strain, complete genome. ACCESSION KT156672 VERSION KT156672.1 KEYWORDS ALV-J associated; defective virus; truncated v-fps oncogene. SOURCE Avian leukosis and sarcoma virus ORGANISM Avian leukosis and sarcoma virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 6542) AUTHORS Wang,Y., Zhao,P., Chang,S., Li,J. and Cui,Z. TITLE Identification of ALV-J associated acutely transforming virus Fu-J JOURNAL Unpublished REFERENCE 2 (bases 1 to 6542) AUTHORS Wang,Y., Zhao,P., Chang,S., Li,J. and Cui,Z. TITLE Direct Submission JOURNAL Submitted (15-JUN-2015) College of Animal Science and Veterinary Medicine, Shandong Agricultural University, Daizong Street 61#, Tai'an City, Shandong Province 271018, China FEATURES Location/Qualifiers source 1..6542 /mol_type="genomic DNA" /country="China" /collection_date="01-Jan-2011" /host="chicken" /db_xref="taxon:1806567" /isolate="Fu-J2" /organism="Avian leukosis and sarcoma virus" repeat_region 1..325 /rpt_type=long_terminal_repeat /note="5' LTR" gene 622..5898 /gene="v-fps" /note="gag-fps-env fusion transcript" CDS 622..4203 /codon_start=1 /protein_id="AMP18894.1" /gene="v-fps" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLILGALKAAREEQATSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPQPQEHTSTSAAAGTWRHTQASESRHRL PHCSAAPSHQDHSAMGFGPELWCPKGHSELLRLQDSELRLLELMKKWMSQRAKSDREY AGMLHHMFSQLEKQEGLGHLRATDHSSQIGESWWVLASQTETLSQTLRRHAEELAAGP LAKLSILIRDKQQLRKAFSEQWQQLSQEYARTTQQEMEKLKAQYRSLVRDSTQAKRKY QEASKDKEREKAKEKYVRSLWKLYALHNQYVLAVRAAALHHHHHYQRALPTLHESLYS LQQEMVLVLKEILGEYCSISSLVQEDVLAIHQEVAHAVEMIDPATEYSSFVQCHRYDS EVPPAVTFDESLLEETESLEPGELQLNELTIESVQHSLTSIEEELLASREAVSSKEQR VWELQAELRGEELALSPGERVHLLGKRQGLQEAQQQLQGLVCAQAKLQAQRDMLANKL AELGSEEPPPALPLQEDRQSVCSTDQERSGVTALETIKNHISGIFSPRFSLPPPVPLI PEVQKPLCQQAWYHGAIPRSEVQELLKCSGDFLVRESQGKQEYVLSVLWDGQPRHFII QAADNLYRLEGDGFPTIPLLIDHLLQSQQPITRKSGIVLTRAVLKDKWVLNHEDVLLG ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILKQYNHPNIVRL IGVCTQKQPIYIVMELVQGGDFLSFLRSEGPHLKMKELIKMMENAAAGMEYLESKHCI HRDLAARNCLVTEKNTLKISDFGMSRQEEDGVYASTGGMKQIPVKWTAPEALNYGRYS SESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIVVPPACRWGFFS" /product="gag-fps-pol fusion protein" /note="oncogene" repeat_region 6218..6542 /rpt_type=long_terminal_repeat /note="3' LTR" ORIGIN 1 tgtagtctta tgcaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggagaa 61 agaaggcact gtacacgttg attggtggaa gtaaggtggt atggtcatgg tgtgatcgtg 121 ccttattagg aagacaacag acgggtcaga catggattgg acgatcccct tagttccgcg 181 ttgcagagag attgtattta agtgcctagc ttgatacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gttgatggcc gggccgtcga ttccctgacg attacgaaca 301 cctgcatgaa gcggaaggct tcatttggtg accccgacgt gatagttagg gaatagtggt 361 cggccaccgg cggcgtggcg atcctgccct catccgtccc gcttaacggg gagcgggcga 421 tgaccctagt agagggggct gcggcttagg agggcagaag ctgagtggcg tcggagggag 481 ctctactgca gggagcccac ataccctacc gagcactcag agggtcgttg gaagacgagg 541 aggaagcccg acgactaagt ggtccgcacc aggcgcggtt ccggttgctc tgcgtgactc 601 tggtcgccct gtggatcaag catggaagcc gtcataaagg tgatttcgtc cgcgtgtaaa 661 acctattgcg ggaaaacctc tccttctaag aaggaaatag gggccatgtt gtccctgtta 721 caaaaggaag ggttgcttat gtccccctca gacttatatt ccccggggtc ctgggatccc 781 attaccgcgg cgctctccca gcgggctatg gtgcttggga aatcgggaga gttgaaaacc 841 tggggattga ttttgggggc attgaaggcg gctcgagagg aacaggctac atctgagcaa 901 gcaaagtttt ggttgggatt agggggaggg agggtctctc ccccaggtcc ggaatgcatc 961 gagaaaccag caacggagcg gcgaatcgat aagggggagg aagtgggaga gacaactgtg 1021 cagcgagatg cgaagatggc gccggaggaa acggccacac ctaaaaccgt tggcacatcc 1081 tgttatcatt gcggaacagc tattggctgt aattgcgcca cagcctcggc tcctcctcct 1141 ccttatgtgg ggagtggttt gtatccttcc ctggcggggg tgggagagca gcagggccag 1201 gggggtgaca cacctcgggg ggcggaacag ccgagggcgg agccagggca tgcgggtcag 1261 gcccctggac cggccctgac tgactgggca aggatcaggg aggagcttgc gagtacaggt 1321 ccgcccgtgg tggccatgcc tgtagtgatt aagacagagg gacccgcctg gacccctctg 1381 gagccaaaat tgattacaag actggctgat acggtcagga ccaagggctt acgatccccg 1441 attactatgg cagaagtgga agcgcttatg tcctccccgc tgctgccgca tgacgtcacg 1501 aatttaatga gagttatttt aggacctgcc ccatatgcct tatggatgga cgcttgggga 1561 gtccaactac agacggttat agcggcagcc actcgcgacc cccgacaccc agcgaatggt 1621 caagggcgag gggaacggac taatttggat cgcttaaagg gcttagctga tgggatggtg 1681 ggcaacccgc agggtcaggc cgcattattg agaccccagc cccaggaaca caccagcacc 1741 agcgctgcag cggggacctg gcggcacact caggcttcgg agtcgcggca caggctgccc 1801 cactgctctg cagccccatc ccaccaggat cacagtgcca tgggctttgg gccggagctg 1861 tggtgcccga aggggcacag tgagctgctg cggctgcagg acagcgagct gcgcctcctg 1921 gagctgatga agaagtggat gtcacagcgt gccaagagcg accgggagta cgcggggatg 1981 ctgcaccaca tgttctctca gctggagaaa caggagggcc tgggacatct ccgtgccacc 2041 gaccacagca gccagatcgg ggagtcgtgg tgggttctgg caagccagac tgagacactg 2101 agccagacgc tgcggcggca cgcggaggag ctggcagcgg ggccgctggc caagctgagc 2161 atactgatcc gtgacaagca gcagcttcgc aaggccttca gtgagcagtg gcagcagctc 2221 agccaggagt acgcccggac cacacagcag gaaatggaga agctgaaggc acagtaccgc 2281 agcctggtgc gtgacagcac ccaggccaag cgcaagtacc aggaggccag caaagacaag 2341 gagcgggaaa aggcgaagga aaagtacgtg cgcagcctgt ggaagctcta tgccctgcac 2401 aaccagtacg tgctggctgt gcgggcggct gcgttgcacc accaccatca ctaccagcgt 2461 gctctgccca ccctgcacga gtccctctac agcctgcagc aggagatggt ccttgttctg 2521 aaggagattc ttggggagta ctgtagcatc agcagtctgg tgcaggagga cgtgctggcc 2581 atccaccagg aggttgccca cgccgtcgag atgatcgacc ccgccactga gtacagcagc 2641 tttgttcagt gccacaggta cgactctgag gtaccaccgg cagtgacctt tgatgagagc 2701 ttgctggagg agacagagag cctggagcca ggggagctgc agctgaatga gctgaccatc 2761 gagagcgtgc agcactccct gacatccatt gaggaggagc tgttggccag cagggaggca 2821 gtgagcagca aggagcagcg ggtgtgggag ctgcaggctg agctgcgggg cgaggagctg 2881 gcactgagcc ccggggagcg ggtgcacttg ctgggcaagc ggcaggggct gcaggaggcc 2941 cagcagcagc tgcagggctt ggtctgtgcc caggccaagc tgcaggcaca gcgggatatg 3001 ctggccaaca agctggcaga gctgggctct gaggagcccc ctcccgcctt gcccctgcag 3061 gaggaccggc agtcagtgtg ctccacggat caggagcgca gtggggtgac tgcgctggag 3121 accatcaaga accacatctc gggcatcttc agtcccaggt tctcgctgcc acctcccgtg 3181 cccctcatcc cggaggtgca gaagccgctg tgccagcagg cctggtacca cggggccatc 3241 ccgcgctcgg aggtgcagga gctgctgaaa tgcagcgggg acttcctggt gcgggagagc 3301 caggggaagc aggagtatgt gctcagcgtg ctgtgggatg ggcagccccg gcacttcatc 3361 atccaggctg ctgacaacct gtacaggctg gaaggcgatg gctttcccac catcccgctg 3421 ctcatcgacc acctgctgca gagccagcag cccatcaccc gcaagagcgg catcgtcctg 3481 accagagccg tgctcaagga caagtgggtg ctcaaccatg aggacgtgct gctgggggag 3541 cgcattggcc gggggaactt cggggaggtg ttcagcggcc gcctgcgtgc tgacaacacc 3601 cccgtggcgg tgaaatcctg ccgggaaacc ctgccgcccg agctgaaggc caagttcctg 3661 caggaagcca ggatcctcaa gcagtacaac catcccaaca tcgtccggct catcggcgtc 3721 tgcacccaga agcagcccat ttacatcgtc atggagctgg tgcagggagg ggacttccta 3781 agcttcctgc gcagcgaggg gccccacctg aagatgaagg agctgatcaa gatgatggag 3841 aatgccgcgg cgggcatgga gtacctggag agcaagcact gcatccacag ggacctggct 3901 gcccgcaact gcctggtgac agagaagaac accctgaaaa tcagcgactt tgggatgtcg 3961 cggcaggagg aggatggtgt ctatgcctcc acggggggca tgaagcagat ccccgtgaag 4021 tggactgccc ccgaggctct gaattacggc cggtacagct cggagagcga cgtgtggagc 4081 tttgggatcc tgctgtggga agccttcagc ctgggcgccg tgccctacgc caacctcagc 4141 aaccagcaga cgcgcgaggc catcgtagtt ccccctgctt gccggtgggg attcttttca 4201 taaagccgtc cccttccgca agcacacgga tcttatcctt caggagccgg ttggcccgct 4261 ctaccatagc ttgaccctgg gaattacccg gaatcccggt ggtgtgtgct atcccccatc 4321 tcgcaagcca ctctcgtgtg gatttggacg tggggcggga cccgttgtct gtttttatgg 4381 cctttgtcgg gcactgtgcc tgataatgtc ccggggatcc acaagtgtag cagagccctc 4441 gggcacgacc acccgaccca gtttgtccat ccctctctct attgactact gccataacta 4501 agggctgaat agcagacgac atggccgcgg ctatgcctcg atccgtaaga ggggcagtct 4561 tctgcctgtc tagcacatat ttgattatct ctcctggggt ggtcagcagt gggggtcctg 4621 ggacggggac tgtccacaca cccaaggcca tgtttgtggt tattctccac tcaacccacc 4681 aaggcgttta ctgcttggtt agaagtgctc acccttttga ttactaagct acgtgcttcg 4741 gcagtgcgaa cctttggcaa ggaggttgat atcctcctgt tgcctgcatg ctttcgggag 4801 gaccttccgc tcccggaggg gatcctgtta gcccttaagg ggtttgcagg aaaaatcagg 4861 agtagtgaca cgccatctat ttttgacatt gcgcgtccac tgcatgtttc tctgaaagtg 4921 agggttaccg accaccctgt accgggaccc actgtcttta ccgacgcctc ctcaagcacc 4981 cataaggggg tggtagtctg gagggagggc ccaaggtggg agataaaaga aatagctgat 5041 ttgggggcaa gcgtacaaca actggaagca cgcgctgtgg ccatggcact tctgctgtgg 5101 ccgacaacgc ccactaatgt ggtgacggac tctgcgtttg ttgcgaaaat gttacttaag 5161 atgggacagg agggagtccc gtctacagcg gcggctttta ttttagagga tgcgttaagc 5221 caaaggtcag ccatggccgc cgttctccac gtgcggagtc attctgaagt gccagggttt 5281 tttacagaag gaaatgatgt ggcagatagc caagccacct ttcaagcgta tcccttgaga 5341 gaggctaaag atcttcatac cgctctccat attggacccc gagcgctatc caaagcgtgt 5401 aatatatcta tgcagcaggc tagggaggtt gttcagacct gcccgcattg taattcagcc 5461 cctgcgttgg aggccggggt aaaccctagg ggtttgggac ccctacagat atggcagaca 5521 gactttacgc ttgagcctag aatggccccc cgttcctggc ttgctgttac tgtggatacc 5581 gcctcatcag cgatagtcgt gactcagcat ggccgtgtca catcggttgc tgcacaacat 5641 cattgggcca cggctatcgc cgttctggga agaccaaggg ccatgaaggc ggatggcggg 5701 tcctgcttta cgtctggatc cacacgaggg tggctcgcga aaggtgttaa gacgctactg 5761 tttgcattgc ttgtcatagt ctgtctatta gctatcattc catgtataat caagtgcttc 5821 caggattgtc tatcgagaac aatgtatcaa ttcatggatg aacgcataag atatcataga 5881 attagggagc aactgtaggt tccgaacgcg atgtgacggg aggctgcgag ggatattcgg 5941 aggaatagga gaatgcgaat cgggctgtaa cggggtaagg cttgactgag gggactgtag 6001 catgtatagg cgctgagcgg ggcttcggtt gtacgcggat aggaatcccc tcaggacaat 6061 tctgcttgaa atgtgatggc accttcctgt tttgccccta gactattcaa gttgcctctg 6121 tggattagga ctggagacag ctcggatggt ctggcggcca aatagagcaa gctagataga 6181 tagctgcgaa atacgctttc gcatagggag ggggagatgt agtcttatgc aatactctta 6241 tgtaacgatg aaacagcaat atgccttata aggagaaaga aggcactgta cacgttgatt 6301 ggtggaagta aggtggtatg gtcatggtgt gatcgtgcct tattaggaag acaacagacg 6361 ggtcagacat ggattggacg atccccttag ttccgcgttg cagagagatt gtatttaagt 6421 gcctagcttg atacaataaa cgccatttta cctcccacca cattggtgtg cacctgggtt 6481 gatggccggg ccgtcgattc cctgacgatt acgaacacct gcatgaagcg gaaggcttca 6541 tt //