LOCUS KT156674 5677 bp DNA linear VRL 14-MAR-2016 DEFINITION Avian leukosis and sarcoam virus Fu-J4 strain, complete genome. ACCESSION KT156674 VERSION KT156674.1 KEYWORDS ALV-J associated; defective virus; truncated v-fps oncogene. SOURCE Avian leukosis and sarcoma virus ORGANISM Avian leukosis and sarcoma virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 5677) AUTHORS Wang,Y., Zhao,P., Chang,S., Li,J. and Cui,Z. TITLE Avian leukosis and sarcoam virus Fu-J4 strain, complete genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 5677) AUTHORS Wang,Y., Zhao,P., Chang,S., Li,J. and Cui,Z. TITLE Direct Submission JOURNAL Submitted (15-JUN-2015) College of Animal Science and Veterinary Medicine, Shandong Agricultural University, Daizong Street 61#, Tai'an City, Shandong Province 271018, China FEATURES Location/Qualifiers source 1..5677 /mol_type="genomic DNA" /country="China" /collection_date="01-Jan-2011" /host="chicken" /note="ALV-J associated acutely transforming virus carrying truncated v-fps oncogene" /db_xref="taxon:1806567" /isolate="Fu-J4" /organism="Avian leukosis and sarcoma virus" repeat_region 1..325 /rpt_type=long_terminal_repeat /note="5' LTR" gene 622..5033 /gene="v-fps" /note="gag-fps-pol-env fusion transcript" CDS 622..3942 /codon_start=1 /protein_id="AMP18896.1" /gene="v-fps" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLILGALKAAREEQATSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPQPQEHTSTSAAAGTWRHTQASESRHRL PHCSAAPSHQDHSAMGFGPELWCPKGHSELLRLQDSELRLLELMKKWMSQRAKSDREY AGMLHHMFSQLEKQEGLGHLRATDHSSQIGESWWVLASQTETLSQTLRRHAEELAAGP LAKLSILIRDKQQLRKAFSEQWQQLSQEYARTTQQEMEKLKAQYRSLVRDSTQAKRKY QEASKDKEREKAKEKYVRSLWKLYALHNQYVLAVRAAALHHHHHYQRALPTLHESLYS LQQEMVLVLKEILGEYCSISSLVQEDVLAIHQEVAHAVEMIDPATEYSSFVQCHRYDS EVPPAVTFDESLLEETESLEPGELQLNELTIESVQHSLTSIEEELLASREAVSSKEQR VWELQAELRGEELALSPGERVHLLGKRQGLQEAQQQLQGLVCAQAKLQAQRDMLANKL AELGSEEPPPALPLQEDRQSVCSTDQERSGVTALETIKNHISGIFSPRFSLPPPVPLI PEVQKPLCQQAWYHGAIPRSEVQELLKCSGDFLVRESQGKQEYVLSVLWDGQPRHFII QAADNLYRLEGDGFPTIPLLIDHLLQSQQPITRKSGIVLTRAVLKDKWVLNHEDVLLG ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILKQYNHPNIVRL IGVCTQKQPIYIVMELVQGGDFLSFLRSEGPHLKMKELIKMMENAAAGMEYLESKHCI HRDLAARNCLVTEKNNSH" /product="gag-fps-pol fusion protein" /note="oncogene" repeat_region 5353..5677 /rpt_type=long_terminal_repeat /note="3' LTR" ORIGIN 1 tgtagtctta tgcaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggagaa 61 agaaggcact gtacacgttg attggtggaa gtaaggtggt atggtcatgg tgtgatcgtg 121 ccttattagg aagacaacag acgggtcaga catggattgg acgatcccct tagttccgcg 181 ttgcagagag attgtattta agtgcctagc ttgatacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gttgatggcc gggccgtcga ttccctgacg attacgaaca 301 cctgcatgaa gcggaaggct tcatttggtg accccgacgt gatagttagg gaatagtggt 361 cggccaccgg cggcgtggcg atcctgccct catccgtccc gcttaacggg gagcgggcga 421 tgaccctagt agagggggct gcggcttagg agggcagaag ctgagtggcg tcggagggag 481 ctctactgca gggagcccac ataccctacc gagcactcag agggtcgttg gaagacgagg 541 aggaagcccg acgactaagt ggtccgcacc aggcgcggtt ccggttgctc tgcgtgactc 601 tggtcgccct gtggatcaag catggaagcc gtcataaagg tgatttcgtc cgcgtgtaaa 661 acctattgcg ggaaaacctc tccttctaag aaggaaatag gggccatgtt gtccctgtta 721 caaaaggaag ggttgcttat gtccccctca gacttatatt ccccggggtc ctgggatccc 781 attaccgcgg cgctctccca gcgggctatg gtgcttggga aatcgggaga gttgaaaacc 841 tggggattga ttttgggggc attgaaggcg gctcgagagg aacaggctac atctgagcaa 901 gcaaagtttt ggttgggatt agggggaggg agggtctctc ccccaggtcc ggaatgcatc 961 gagaaaccag caacggagcg gcgaatcgat aagggggagg aagtgggaga gacaactgtg 1021 cagcgagatg cgaagatggc gccggaggaa acggccacac ctaaaaccgt tggcacatcc 1081 tgttatcatt gcggaacagc tattggctgt aattgcgcca cagcctcggc tcctcctcct 1141 ccttatgtgg ggagtggttt gtatccttcc ctggcggggg tgggagagca gcagggccag 1201 gggggtgaca cacctcgggg ggcggaacag ccgagggcgg agccagggca tgcgggtcag 1261 gcccctggac cggccctgac tgactgggca aggatcaggg aggagcttgc gagtacaggt 1321 ccgcccgtgg tggccatgcc tgtagtgatt aagacagagg gacccgcctg gacccctctg 1381 gagccaaaat tgattacaag actggctgat acggtcagga ccaagggctt acgatccccg 1441 attactatgg cagaagtgga agcgcttatg tcctccccgc tgctgccgca tgacgtcacg 1501 aatttaatga gagttatttt aggacctgcc ccatatgcct tatggatgga cgcttgggga 1561 gtccaactac agacggttat agcggcagcc actcgcgacc cccgacaccc agcgaatggt 1621 caagggcgag gggaacggac taatttggat cgcttaaagg gcttagctga tgggatggtg 1681 ggcaacccgc agggtcaggc cgcattattg agaccccagc cccaggaaca caccagcacc 1741 agcgctgcag cggggacctg gcggcacact caggcttcgg agtcgcggca caggctgccc 1801 cactgctctg cagccccatc ccaccaggat cacagtgcca tgggctttgg gccggagctg 1861 tggtgcccga aggggcacag tgagctgctg cggctgcagg acagcgagct gcgcctcctg 1921 gagctgatga agaagtggat gtcacagcgt gccaagagcg accgggagta cgcggggatg 1981 ctgcaccaca tgttctctca gctggagaaa caggagggcc tgggacatct ccgtgccacc 2041 gaccacagca gccagatcgg ggagtcgtgg tgggttctgg caagccagac tgagacactg 2101 agccagacgc tgcggcggca cgcggaggag ctggcagcgg ggccgctggc caagctgagc 2161 atactgatcc gtgacaagca gcagcttcgc aaggccttca gtgagcagtg gcagcagctc 2221 agccaggagt acgcccggac cacacagcag gaaatggaga agctgaaggc acagtaccgc 2281 agcctggtgc gtgacagcac ccaggccaag cgcaagtacc aggaggccag caaagacaag 2341 gagcgggaaa aggcgaagga aaagtacgtg cgcagcctgt ggaagctcta tgccctgcac 2401 aaccagtacg tgctggctgt gcgggcggct gcgttgcacc accaccatca ctaccagcgt 2461 gctctgccca ccctgcacga gtccctctac agcctgcagc aggagatggt ccttgttctg 2521 aaggagattc ttggggagta ctgtagcatc agcagtctgg tgcaggagga cgtgctggcc 2581 atccaccagg aggttgccca cgccgtcgag atgatcgacc ccgccactga gtacagcagc 2641 tttgttcagt gccacaggta cgactctgag gtaccaccgg cagtgacctt tgatgagagc 2701 ttgctggagg agacagagag cctggagcca ggggagctgc agctgaatga gctgaccatc 2761 gagagcgtgc agcactccct gacatccatt gaggaggagc tgttggccag cagggaggca 2821 gtgagcagca aggagcagcg ggtgtgggag ctgcaggctg agctgcgggg cgaggagctg 2881 gcactgagcc ccggggagcg ggtgcacttg ctgggcaagc ggcaggggct gcaggaggcc 2941 cagcagcagc tgcagggctt ggtctgtgcc caggccaagc tgcaggcaca gcgggatatg 3001 ctggccaaca agctggcaga gctgggctct gaggagcccc ctcccgcctt gcccctgcag 3061 gaggaccggc agtcagtgtg ctccacggat caggagcgca gtggggtgac tgcgctggag 3121 accatcaaga accacatctc gggcatcttc agtcccaggt tctcgctgcc acctcccgtg 3181 cccctcatcc cggaggtgca gaagccgctg tgccagcagg cctggtacca cggggccatc 3241 ccgcgctcgg aggtgcagga gctgctgaaa tgcagcgggg acttcctggt gcgggagagc 3301 caggggaagc aggagtatgt gctcagcgtg ctgtgggatg ggcagccccg gcacttcatc 3361 atccaggctg ctgacaacct gtacaggctg gaaggcgatg gctttcccac catcccgctg 3421 ctcatcgacc acctgctgca gagccagcag cccatcaccc gcaagagcgg catcgtcctg 3481 accagagccg tgctcaagga caagtgggtg ctcaaccatg aggacgtgct gctgggggag 3541 cgcattggcc gggggaactt cggggaggtg ttcagcggcc gcctgcgtgc tgacaacacc 3601 cccgtggcgg tgaaatcctg ccgggaaacc ctgccgcccg agctgaaggc caagttcctg 3661 caggaagcca ggatcctcaa gcagtacaac catcccaaca tcgtccggct catcggcgtc 3721 tgcacccaga agcagcccat ttacatcgtc atggagctgg tgcagggagg ggacttccta 3781 agcttcctgc gcagcgaggg gccccacctg aagatgaagg agctgatcaa gatgatggag 3841 aatgccgcgg cgggcatgga gtacctggag agcaagcact gcatccacag ggacctggct 3901 gcccgcaact gcctggtgac agagaagaat aactctcatt aaattcgtga cgtcatgcgg 3961 cagcagcggg gaggacataa gcgcttccac ttctgccata gtaatcgggg atcgtaagcc 4021 cttggtcctg accgtatcag ccagtcttgt aatcaatttt ggctccagag gggtccaggc 4081 gggtccctct gtcttaatca ctacaggcat ggccaccacg ggcggacctg tactcgcaag 4141 agggcccaag gtgggagata aaagaaatag ctgatttggg ggcaagcgta caacaactgg 4201 aagcacgcgc tgtggccatg gcacttctgc tgtggccgac aacgcccact aatgtggtga 4261 cggactctgc gtttgttgcg aaaatgttac ttaagatggg acaggaggga gtcccgtcta 4321 cagcggcggc ttttatttta gaggatgcgt taagccaaag gtcagccatg gccgccgttc 4381 tccacgtgcg gagtcattct gaagtgccag ggttttttac agaaggaaat gatgtggcag 4441 atagccaagc cacctttcaa gcgtatccct tgagagaggc taaagatctt cataccgctc 4501 tccatattgg accccgagcg ctatccaaag cgtgtaatat atctatgcag cacgctaggg 4561 aggttgttca gacctgcccg cattgtaatt cagcccctgc gttggaggcc ggggtaaacc 4621 ctaggggttt gggaccccta cagatatggc agacagactt tacgcttgag cctagaatgg 4681 ccccccgttc ctggcttgct gttactgtgg ataccgcctc atcagcgata gtcgtaactc 4741 agcatggccg tgtcacatcg gttgctgcac aacatcattg ggccacggct atcgccgttc 4801 tgggaagacc aaaggccata aaaacagata acgggtcctg ctttacgtct aaatccacac 4861 gagggtggct cgcgaaaggt gttaagacgc tactgtttgc attgcttgtc atagcctgtc 4921 tattagctat cattccatgt ataatcaagt gcttccagga ttgtctatcg agaacaatgt 4981 atcaattcat ggatgaacgc ataagatatc atagaattag ggagcaactg taggttccga 5041 acgcgatgtg acgggaggct gcgagggata ttcggaggaa taggagaatg cgaatcgggc 5101 tgtaacgggg taaggcttga ctgaggggac tgtagcatgt ataggcgctg agcggggctt 5161 cggttgtacg cggataggaa tcccctcagg acaattctgc ttgaaatgtg atggcacctt 5221 cctgttttgc ccctagacta ttcaagttgc ctctgtggat taggactgga gacagctcgg 5281 atggtctggc ggccaaatag agcaagctag atagatagct gcgaaatacg ctttcgcata 5341 gggaggggga gatgtagtct tatgcaatac tcttatgtaa cgatgaaaca gcaatatgcc 5401 ttataaggag aaagaaggca ctgtacacgt tgattggtgg aagtaaggtg gtatggtcat 5461 ggtgtgatcg tgccttatta ggaagacaac agacgggtca gacatggatt ggacgatccc 5521 cttagttccg cgttgcagag agattgtatt taagtgccta gcttgataca ataaacgcca 5581 ttttacctcc caccacattg gtgtgcacct gggttgatgg ccgggccgtc gattccctga 5641 cgattacgaa cacctgcatg aagcggaagg cttcatt //