LOCUS KT156669 6247 bp DNA linear VRL 14-MAR-2016 DEFINITION Avian leukosis and sarcoam virus Fu-J5 strain, complete genome. ACCESSION KT156669 VERSION KT156669.1 KEYWORDS ALV-J associated; defective virus; truncated v-fps oncogene. SOURCE Avian leukosis and sarcoma virus ORGANISM Avian leukosis and sarcoma virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 6247) AUTHORS Wang,Y., Zhao,P., Chang,S., Li,J. and Cui,Z. TITLE Identification of ALV-J associated acutely transforming virus Fu-J JOURNAL Unpublished REFERENCE 2 (bases 1 to 6247) AUTHORS Wang,Y., Zhao,P., Chang,S., Li,J. and Cui,Z. TITLE Direct Submission JOURNAL Submitted (15-JUN-2015) College of Animal Science and Veterinary Medicine, Shandong Agricultural University, Daizong Street 61#, Tai'an City, Shandong Province 271018, China FEATURES Location/Qualifiers source 1..6247 /mol_type="genomic DNA" /country="China" /collection_date="01-Jan-2011" /host="chicken" /note="ALV-J associated acutely transforming virus carrying truncated v-fps" /db_xref="taxon:1806567" /isolate="Fu-J5" /organism="Avian leukosis and sarcoma virus" repeat_region 1..325 /rpt_type=long_terminal_repeat /note="5' LTR" gene 622..5603 /gene="v-fps" /note="gag-fps-env fusion transcript" CDS 622..3945 /codon_start=1 /protein_id="AMP18891.1" /gene="v-fps" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLILGALKAAREEQATSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPQPQEHTSTSAAAGTWRHTQASESRHRL PHCSAAPSHQDHSAMGFGPELWCPKGHSELLRLQDSELRLLELMKKWMSQRAKSDREY AGMLHHMFSQLEKQEGLGHLRATDHSSQIGESWWVLASQTETLSQTLRRHAEELAAGP LAKLSILIRDKQQLRKAFSEQWQQLSQEYARTTQQEMEKLKAQYRSLVRDSTQAKRKY QEASKDKEREKAKEKYVRSLWKLYALHNQYVLAVRAAALHHHHHYQRALPTLHESLYS LQQEMVLVLKEILGEYCSISSLVQEDVLAIHQEVAHAVEMIDPATEYSSFVQCHRYDS EVPPAVTFDESLLEETESLEPGELQLNELTIESVQHSLTSIEEELLASREAVSSKEQR VWELQAELRGEELALSPGERVHLLGKRQGLQEAQQQLQGLVCAQAKLQAQRDMLANKL AELGSEEPPPALPLQEDRQSVCSTDQERSGVTALETIKNHISGIFSPRFSLPPPVPLI PEVQKPLCQQAWYHGAIPRSEVQELLKCSGDFLVRESQGKQEYVLSVLWDGQPRHFII QAADNLYRLEGDGFPTIPLLIDHLLQSQQPITRKSGIVLTRAVLKDKWVLNHEDVLLG ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILKQYNHPNIVRL IGVCTQKQPIYIVMELVQGGDFLSFLRSEGPHLKMKELIKMMENAAAGMEYLESKHCI HRDLAARNCLVTEKNTLEK" /product="gag-fps-env fusion protein" /note="oncogene" repeat_region 5923..6247 /rpt_type=long_terminal_repeat /note="3' LTR" ORIGIN 1 tgtagtctta tgcaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggagaa 61 agaaggcact gtacacgttg attggtggaa gtaaggtggt atggtcatgg tgtgatcgtg 121 ccttattagg aagacaacag acgggtcaga catggattgg acgatcccct tagttccgcg 181 ttgcagagag attgtattta agtgcctagc ttgatacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gttgatggcc gggccgtcga ttccctgacg attacgaaca 301 cctgcatgaa gcggaaggct tcatttggtg accccgacgt gatagttagg gaatagtggt 361 cggccaccgg cggcgtggcg atcctgccct catccgtccc gcttaacggg gagcgggcga 421 tgaccctagt agagggggct gcggcttagg agggcagaag ctgagtggcg tcggagggag 481 ctctactgca gggagcccac ataccctacc gagcactcag agggtcgttg gaagacgagg 541 aggaagcccg acgactaagt ggtccgcacc aggcgcggtt ccggttgctc tgcgtgactc 601 tggtcgccct gtggatcaag catggaagcc gtcataaagg tgatttcgtc cgcgtgtaaa 661 acctattgcg ggaaaacctc tccttctaag aaggaaatag gggccatgtt gtccctgtta 721 caaaaggaag ggttgcttat gtccccctca gacttatatt ccccggggtc ctgggatccc 781 attaccgcgg cgctctccca gcgggctatg gtgcttggga aatcgggaga gttgaaaacc 841 tggggattga ttttgggggc attgaaggcg gctcgagagg aacaggctac atctgagcaa 901 gcaaagtttt ggttgggatt agggggaggg agggtctctc ccccaggtcc ggaatgcatc 961 gagaaaccag caacggagcg gcgaatcgat aagggggagg aagtgggaga gacaactgtg 1021 cagcgagatg cgaagatggc gccggaggaa acggccacac ctaaaaccgt tggcacatcc 1081 tgttatcatt gcggaacagc tattggctgt aattgcgcca cagcctcggc tcctcctcct 1141 ccttatgtgg ggagtggttt gtatccttcc ctggcggggg tgggagagca gcagggccag 1201 gggggtgaca cacctcgggg ggcggaacag ccgagggcgg agccagggca tgcgggtcag 1261 gcccctggac cggccctgac tgactgggca aggatcaggg aggagcttgc gagtacaggt 1321 ccgcccgtgg tggccatgcc tgtagtgatt aagacagagg gacccgcctg gacccctctg 1381 gagccaaaat tgattacaag actggctgat acggtcagga ccaagggctt acgatccccg 1441 attactatgg cagaagtgga agcgcttatg tcctccccgc tgctgccgca tgacgtcacg 1501 aatttaatga gagttatttt aggacctgcc ccatatgcct tatggatgga cgcttgggga 1561 gtccaactac agacggttat agcggcagcc actcgcgacc cccgacaccc agcgaatggt 1621 caagggcgag gggaacggac taatttggat cgcttaaagg gcttagctga tgggatggtg 1681 ggcaacccgc agggtcaggc cgcattattg agaccccagc cccaggaaca caccagcacc 1741 agcgctgcag cggggacctg gcggcacact caggcttcgg agtcgcggca caggctgccc 1801 cactgctctg cagccccatc ccaccaggat cacagtgcca tgggctttgg gccggagctg 1861 tggtgcccga aggggcacag tgagctgctg cggctgcagg acagcgagct gcgcctcctg 1921 gagctgatga agaagtggat gtcacagcgt gccaagagcg accgggagta cgcggggatg 1981 ctgcaccaca tgttctctca gctggagaaa caggagggcc tgggacatct ccgtgccacc 2041 gaccacagca gccagatcgg ggagtcgtgg tgggttctgg caagccagac tgagacactg 2101 agccagacgc tgcggcggca cgcggaggag ctggcagcgg ggccgctggc caagctgagc 2161 atactgatcc gtgacaagca gcagcttcgc aaggccttca gtgagcagtg gcagcagctc 2221 agccaggagt acgcccggac cacacagcag gaaatggaga agctgaaggc acagtaccgc 2281 agcctggtgc gtgacagcac ccaggccaag cgcaagtacc aggaggccag caaagacaag 2341 gagcgggaaa aggcgaagga aaagtacgtg cgcagcctgt ggaagctcta tgccctgcac 2401 aaccagtacg tgctggctgt gcgggcggct gcgttgcacc accaccatca ctaccagcgt 2461 gctctgccca ccctgcacga gtccctctac agcctgcagc aggagatggt ccttgttctg 2521 aaggagattc ttggggagta ctgtagcatc agcagtctgg tgcaggagga cgtgctggcc 2581 atccaccagg aggttgccca cgccgtcgag atgatcgacc ccgccactga gtacagcagc 2641 tttgttcagt gccacaggta cgactctgag gtaccaccgg cagtgacctt tgatgagagc 2701 ttgctggagg agacagagag cctggagcca ggggagctgc agctgaatga gctgaccatc 2761 gagagcgtgc agcactccct gacatccatt gaggaggagc tgttggccag cagggaggca 2821 gtgagcagca aggagcagcg ggtgtgggag ctgcaggctg agctgcgggg cgaggagctg 2881 gcactgagcc ccggggagcg ggtgcacttg ctgggcaagc ggcaggggct gcaggaggcc 2941 cagcagcagc tgcagggctt ggtctgtgcc caggccaagc tgcaggcaca gcgggatatg 3001 ctggccaaca agctggcaga gctgggctct gaggagcccc ctcccgcctt gcccctgcag 3061 gaggaccggc agtcagtgtg ctccacggat caggagcgca gtggggtgac tgcgctggag 3121 accatcaaga accacatctc gggcatcttc agtcccaggt tctcgctgcc acctcccgtg 3181 cccctcatcc cggaggtgca gaagccgctg tgccagcagg cctggtacca cggggccatc 3241 ccgcgctcgg aggtgcagga gctgctgaaa tgcagcgggg acttcctggt gcgggagagc 3301 caggggaagc aggagtatgt gctcagcgtg ctgtgggatg ggcagccccg gcacttcatc 3361 atccaggctg ctgacaacct gtacaggctg gaaggcgatg gctttcccac catcccgctg 3421 ctcatcgacc acctgctgca gagccagcag cccatcaccc gcaagagcgg catcgtcctg 3481 accagagccg tgctcaagga caagtgggtg ctcaaccatg aggacgtgct gctgggggag 3541 cgcattggcc gggggaactt cggggaggtg ttcagcggcc gcctgcgtgc tgacaacacc 3601 cccgtggcgg tgaaatcctg ccgggaaacc ctgccgcccg agctgaaggc caagttcctg 3661 caggaagcca ggatcctcaa gcagtacaac catcccaaca tcgtccggct catcggcgtc 3721 tgcacccaga agcagcccat ttacatcgtc atggagctgg tgcagggagg ggacttccta 3781 agcttcctgc gcagcgaggg gccccacctg aagatgaagg agctgatcaa gatgatggag 3841 aatgccgcgg cgggcatgga gtacctggag agcaagcact gcatccacag ggacctggct 3901 gcccgcaact gcctggtgac agagaagaac accctggaaa agtgagcaag aaggactcta 3961 agaagaagcc gccagcaaca agcaagaaag acccggagaa gacacccttg ctgccgtcga 4021 gaggttattt cttctttcaa atgatacttg tgtgcgtggt tattatttct gttgtcccag 4081 gggtgggggg agttcatctg ttgcaacaac caggaaacgt gtgggtcacc tgggcaaata 4141 agacgggcca aacagatttt tgccttagtc tacagtcagc gacctcgcca ttccgcacct 4201 gcttgatagg cattccacag tatcctctga gcgcctttga gggatatgtc actaatatta 4261 ctgcttgcca aaacgacacc gatttagcca gccaaacagc atgcttgata cagactctaa 4321 atacgaccct cccttgggac ccccaagaat tggatatttt agggtcccag atgatcaaga 4381 acggaacaaa ccgtacgtgc gttacctttg gttcggtgtg ctatgggaac aatggcagta 4441 gagtctgcca catttttgat gggaatttta atgggactgg tggggcggaa gcagaattgc 4501 gtgacttcat aacaaaatgg aaaggtgatg accatcttat aaggccctat gtcaaccaat 4561 catggacgat ggtaagtcca ataaacacag agagtttttc aataagtagt agatattgtg 4621 gattcaccag caacgagact cgttattata gagggaactc ttctaattgg tgtggttcaa 4681 aagggggaga atggtcagcg ggatacagta acgggacaca atgtcccggc aacacgacgg 4741 attgtggtgg taattgcaca gcggaatgga attattatgc atatgggttt accttcggga 4801 atcagccaga gatattgtgg aataatggga ctgctaaggc actcccccca ggtattttct 4861 tgatttgtgg ggacagggct tggcaaggca tcccgagtaa tgccttggga gggccctgtt 4921 atctaggaca attgactatg ctctctccta actttaccac ctggatgacg tatgggccga 4981 acattacggg tcaccgccgt agcaggcgct cggtgagtca tctctcgtct gactgcagtg 5041 acgaggtaca gctatggagt gcgacagccc ggatatttgc ctctttcttt gctcctggtg 5101 tagccgcagc acaggcctta agggagattg aacgcttggc atgttggtcg gttaagcaag 5161 caaatttaac atcattaata ttgaatgcga tgctggagga catgaacagc atccggcacg 5221 cggtgttgca gaatcgagca gccatcgatt tcttactcct ggcacagggg cacggatgtc 5281 aagacgtaga agggatgtgt tgcttcaatc tcagcgatca cagtgagtcc attcacaagg 5341 cgctccgagc catgaaggaa catacagaga agatacgggt ggaagacgat cccatagggg 5401 attggtttac gcgcacattt ggtagttttg gagggtggct cgcgaaaggt gttaagacgc 5461 tactgtttgc attgcttgtc atagtctgtc tattagctat cattccatgt ataatcaagt 5521 gcttccagga ttgtctatcg agaacaatgt atcaattcat ggatgaacgc ataagatatc 5581 atagaattag ggagcaactg taggttccga acgcgatgtg acgggaggct gcgagggata 5641 ttcggaggaa taggagaatg cgaatcgggc tgtaacgggg taaggcttga ctgaggggac 5701 tgtagcatgt ataggcgctg agcggggctt cggttgtacg cggataggaa tcccctcagg 5761 acaattctgc ttgaaatgtg atggcacctt cctgttttgc ccctagacta ttcaagttgc 5821 ctctgtggat taggactgga gacagctcgg atggtctggc ggccaaatag agcaagctag 5881 atagatagct gcgaaatacg ctttcgcata gggaggggga gatgtagtct tatgcaatac 5941 tcttatgtaa cgatgaaaca gcaatatgcc ttataaggag aaagaaggca ctgtacacgt 6001 tgattggtgg aagtaaggtg gtatggtcat ggtgtgatcg tgccttatta ggaagacaac 6061 agacgggtca gacatggatt ggacgatccc cttagttccg cgttgcagag agattgtatt 6121 taagtgccta gcttgataca ataaacgcca ttttacctcc caccacattg gtgtgcacct 6181 gggttgatgg ccgggccgtc gattccctga cgattacgaa cacctgcatg aagcggaagg 6241 cttcatt //