LOCUS KU159179 3772 bp DNA linear VRL 30-MAR-2016 DEFINITION Avian leukosis and sarcoam virus SJ-1 strain, complete genome. ACCESSION KU159179 VERSION KU159179.1 KEYWORDS acutely transforming virus; ALV-J associated; defective virus; v-src oncogene. SOURCE Avian leukosis and sarcoma virus ORGANISM Avian leukosis and sarcoma virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 3772) AUTHORS Wang,Y., Li,J., Zhao,P., Chang,S. and Cui,Z. TITLE Avian leukosis and sarcoam virus SJ-1 strain, complete genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 3772) AUTHORS Wang,Y., Li,J., Zhao,P., Chang,S. and Cui,Z. TITLE Direct Submission JOURNAL Submitted (15-NOV-2015) College of Animal Science and Veterinary Medicine, Shandong Agricultural University, Daizong Street 61, Tai'an City, Shandong Province 271018, China FEATURES Location/Qualifiers source 1..3772 /mol_type="genomic DNA" /country="China" /collection_date="01-Jun-2010" /host="Gallus gallus (chicken)" /note="associated defective virus; subgroup: J" /db_xref="taxon:1806567" /isolate="SJ-1" /organism="Avian leukosis and sarcoma virus" repeat_region 1..325 /rpt_type=long_terminal_repeat /note="5' LTR" gene 1008..2588 /gene="v-src" CDS 1008..2588 /codon_start=1 /protein_id="AMP18903.1" /gene="v-src" /translation="MGSSKSKPKDPSQRRRSLEPPDSTHHGGFPASQTPNKTAAPDTH RTPSRSFGTVATEPKLFGGFNTSDTVTSPQRAGALAGGVTTFVALYDYESRTETDLSF KKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESER LLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT QFSSLQQLVAYYSKHADGLCHRLTNVCPTSKPQTQGLAKDAWEIPRESLRLGVKLGQG CFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI YIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANI LVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI LLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPT FEYLQAFLEDYFTSTEPQ" /product="v-src oncoprotein" gene 2589..3128 /gene="env" misc_feature 2589..3128 /gene="env" /note="nonfunctional env protein due to mutation" repeat_region 3448..3772 /rpt_type=long_terminal_repeat /note="3' LTR" ORIGIN 1 tgtagtctta tgcaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggagaa 61 cgaaggcact gtacccgttg attggtggaa gtaaggtggt acggtcatgg tatgatcgtg 121 ccttattagg gaggcaacag acgggtcaga catggattgg acgatctcct tagttccgcg 181 ttgcaaagaa attgtattta agtgcctagc ttgatacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gttgatggcc ggaccgtcga ttccctgacg attacgaaca 301 cctgcatgaa gcagaaggct tcatttggtg accccgacgt gatcgttagg gaatagtggt 361 cggccaccgg cggcgtggcg atcctgccct catccgtccc gcttaacggg gagcgggcga 421 tgaccctggt agagggggct gcggcttagg agggcagaag ctgagtggcg tcggagggag 481 ctctactgca gggagcccac ataccctacc gagcactcag agggtcgttg gaagacggga 541 aggaagctcg acgactgagc agtccacccc aggcgcggtt ccggttgctc tgcgtgattc 601 tggtcgccct gtggatcaag catggaagcc gtcataaagg tgatttcgtc cgcgtgtaaa 661 acctattgcg ggaaaacctc tccttctaag aaggaagggt gagcgggggc agggagcggc 721 gcgccggatc cgcggtgctg cgcgatgctg ccggcggcgc agccctgagc gcccggcacg 781 gcccggcccg cggctgcggg cacccagcgc ggcggcggcg gcggcggctg cggggggcgg 841 cggcggccgc gcccccggcg cggagacaaa gccgcggccg agccctgtag gggagcggcg 901 gggttcggcc ccgcggcgcg cgcacgcggg aggagctgag ctgactctgc tggtggcctc 961 acgtaccact gtggccaggc ggtagctggg acgtgcagcc ccccaccatg gggagcagca 1021 agagcaagcc caaggacccc agccagcgcc ggcgcagcct ggagccaccc gacagcaccc 1081 accacggggg attcccagcc tcacagaccc ccaacaagac agcagccccc gacacgcacc 1141 gcacccccag ccgctccttt gggaccgtgg ccaccgagcc caagctcttc gggggcttca 1201 acacttctga caccgtcacg tcgccgcagc gtgccggggc actggctggc ggcgtcacca 1261 ctttcgtggc tctctacgac tacgagtccc ggactgaaac ggacttgtcc ttcaagaaag 1321 gagaacgcct gcagattgtc aacaacacgg aaggtgactg gtggctggct cattccctca 1381 ctacaggaca gacgggctac atccccagta actatgtcgc gccctcagac tccatccagg 1441 ctgaagagtg gtactttggg aagatcactc gtcgggagtc cgagcggctg ctgctcaacc 1501 ccgaaaaccc ccggggaacc ttcttggtcc gggagagcga gacgacaaaa ggtgcctatt 1561 gcctctccgt ttctgacttt gacaacgcca aggggctcaa tgtgaagcac tacaagatcc 1621 gcaagctgga cagcggcggc ttctacatca cctcacgcac acagttcagc agcctgcagc 1681 agctggtggc ctactactcc aaacacgctg atggcttgtg ccaccgcctg accaacgtct 1741 gccccacgtc caagccccag acccagggac tcgccaagga cgcgtgggaa atcccccggg 1801 agtcgctgcg gctgggggtg aagctggggc agggctgctt tggagaggtc tggatgggga 1861 cctggaacgg caccaccaga gtggccataa agactctgaa gcccggcacc atgtccccgg 1921 aggccttcct gcaggaagcc caagtgatga agaagctccg gcatgagaag ctggttcagc 1981 tgtacgcagt ggtgtcggaa gagcccatct acatcgtcac tgagtacatg agcaagggga 2041 gcctcctgga cttcctgaag ggagagatgg gcaagtacct gcggctgcca cagctcgtcg 2101 atatggctgc tcagattgca tccggcatgg cctatgtgga gaggatgaac tacgtgcacc 2161 gagacctgcg ggcggccaac atcctggtgg gggagaacct ggtgtgcaag gtggctgact 2221 ttgggctggc acgcctcatc gaggacaacg agtacacagc acggcaaggt gccaagttcc 2281 ccatcaagtg gacagccccc gaggcagccc tctatggccg gttcaccatc aagtcggatg 2341 tctggtcctt cggcatcctg ctgactgagc tgaccaccaa gggccgggtg ccatacccag 2401 ggatggtcaa cagggaggtg ctggaccagg tggagagggg ctaccgcatg ccctgcccgc 2461 ccgagtgccc cgagtcgctg catgacctca tgtgccagtg ctggcggaag gaccctgagg 2521 agcggcccac ttttgagtac ctgcaggcct tcctggagga ctacttcacc tcgacagagc 2581 cccagtagac agcccggata tttgcctctt tctttgctcc tggtgtagct gcagcacagg 2641 ccttaaggga gattgaacgc ttggtatgtt ggtcggttaa gcaagcaaat ttaacatcat 2701 tagtattgaa tgcgatgctg gaggacatga acagcatccg gcacgcggtg ttgcagaatc 2761 gagcagccat cgatttctta ctcctggcgc agggacacgg gtgtcaagac gtagaaggga 2821 tgtgttgctt caatctcagc gatcacagtg agtccattca caagacgctc caagccatga 2881 aggaacatac agagaagata cgggtggaag acgatcccat aggggattgg tttacgcgca 2941 cgtttggtag ttttggaggg tggctcgcga aaggtgttaa ggcgctactg tttgcattgc 3001 ttgtcatagt ctgtctatta gctatcattc catgtataat caagtgcttc caggactgtc 3061 tatcaagaac aatgtatcag ttcatggatg gacgcataag atatcataga attagggagc 3121 aactgtaggt tccgaacgcg atgtgacggg aggctgcgag ggatattcgg gggaatagga 3181 gaatgcgaat cgggctgtaa cggggcaagg cttgactgag gggactataa catgtatagg 3241 cgctgagcgg ggcttcggtt gtacgcggat aggaatcccc tcaggataat tctgcttgaa 3301 atgtgatggc accttcctgt tttgccctta gactattcaa gttgcctctg tggattagga 3361 ctggagacag ctcggatggc ctgatggcca aatagagcaa gctagatagg tagctgcgaa 3421 atacgctttt gcatagggag ggggaaatgt agtcttatgc aatactctta tgtaacgatg 3481 aaacagcaat atgccttata aggaggaaga aggcactgta cccgttgatt ggtggaagta 3541 aggtggtacg gtcatggtat gatcgtgcct tattagggag gcaacagacg ggtcagacat 3601 ggattggacg atctccttag ttccgcgttg caaagaaatt gtatttaagt gcctagcttg 3661 atacaataaa cgccatttta cctcccacca cattggtgtg cacctgggtt gatggccgga 3721 ccgtcgattc cctgacgatt acgaacacct gcatgaagcg gaaggcttca tt //