LOCUS KU159182 7578 bp DNA linear VRL 30-MAR-2016 DEFINITION Avian leukosis and sarcoam virus SJ-4 strain, complete genome. ACCESSION KU159182 VERSION KU159182.1 KEYWORDS acutely transforming virus; ALV-J associated; defective virus; v-src oncogene. SOURCE Avian leukosis and sarcoma virus ORGANISM Avian leukosis and sarcoma virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7578) AUTHORS Wang,Y., Li,J., Zhao,P., Chang,S. and Cui,Z. TITLE Avian leukosis and sarcoam virus SJ-4 strain, complete genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 7578) AUTHORS Wang,Y., Li,J., Zhao,P., Chang,S. and Cui,Z. TITLE Direct Submission JOURNAL Submitted (15-NOV-2015) College of Animal Science and Veterinary Medicine, Shandong Agricultural University, Daizong Street 61, Tai'an City, Shandong Province 271018, China FEATURES Location/Qualifiers source 1..7578 /mol_type="genomic DNA" /country="China" /collection_date="01-Jun-2010" /host="Gallus gallus (chicken)" /note="associated defective virus; subgroup: J" /db_xref="taxon:1806567" /isolate="SJ-4" /organism="Avian leukosis and sarcoma virus" repeat_region 1..325 /rpt_type=long_terminal_repeat /note="5' LTR" gene 622..2727 /gene="gag" CDS 622..2727 /codon_start=1 /protein_id="AMP18908.1" /gene="gag" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSLSD LYSPGSWDPITAALTQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMAGNPEGHAALLRPGELVAITASALQAFREVARLAEPTDPW AEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDRGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGNQGQRPGRGLSSG PWPVSQRPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag protein" gene 2727..4870 /gene="pol" misc_feature 2727..4870 /gene="pol" /note="nonfunctional pol protein due to mutation" CDS 4871..6394 /codon_start=1 /protein_id="AMP18909.1" /translation="MGDSTHHGGFPASQTPNKTAAPDTHRTPSRSFGTVATEPKLFGG FNTSDTVTSPQRAGALAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA HSLTTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNPENPRGTFLVRESET TKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSLQQLVAYYSKHADGL CHRLTNVCPTSKPQTQGLAKDAWEIPRESLRLGVKLGQGCFGEVWMGTWNGTTRVAIK TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGE MGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ" /product="truncated v-src protein" /note="contains N-terminal deletion" gene 6395..6934 /gene="env" misc_feature 6395..6934 /gene="env" /note="nonfunctional env protein due to mutation" repeat_region 7254..7578 /rpt_type=long_terminal_repeat /note="3' LTR" ORIGIN 1 tgtagtctta tgcaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggagaa 61 agaaggcact gtacacgttg attggtggaa gtaaggtggt atggtcatgg tgtgatcgtg 121 ccttattagg aagacaacag acgggtcaga catggattgg acgatcccct tagttccgcg 181 ttgcagagag attgtattta agtgcctagc ttgatacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gtagatggac agaccgttga gtccctaacg attgcgaaca 301 cctgaatgaa gctgaaggct tcatttggtg accccgacgt gatcgttagg gaatagtggt 361 cggccacagg cggcgtggcg atcctgccct catccgtctc gcttaacgga gcgaggacga 421 tgaccctagt agagggggct gcggcttagg agggcagaag ctgagtgacg tcggagggag 481 ctccacggcc gggggccaag ataacctacc gagaactcag agagtcgttg gaagacggga 541 aggaagcccg acgactgagc agtccacccc aggcgcgatt ccggttgctc tgcgtgactc 601 tggtcgcccg gtggatcaag catggaagcc gtcataaagg tgatttcgtc cgcgtgtaaa 661 acctattgcg ggaaaacctc tccttctaag aaggaaatag gggccatgtt gtccctgtta 721 caaaaggaag ggttgcttat gtccctctca gacttatatt ccccggggtc ctgggatccc 781 attaccgcgg cactcaccca gcgggcaatg gtacttggga aatcgggaga gttaaaaacc 841 tggggattgg ttttgggggc attgaaggcg gctcgagagg aacaggttac atctgagcaa 901 gcaaagtttt ggttgggatt agggggaggg agggtctctc ccccaggtcc ggagtgcatc 961 gagaaaccag caacggagcg gcgaatcgac aagggggagg aagtgggaga aacaactgtg 1021 cagcgagatg cgaagatggc gccggaggaa acggccacac ctaaaaccgt tggcacatcc 1081 tgctatcatt gcggaacagc tattggctgt aattgcgcca cagcctcggc ccctcctcct 1141 ccttatgtgg ggagtggttt gtatccttcc ctggcggggg tgggagagca gcagggccag 1201 gggggtgaca cacctcgggg ggcggaacag ccaagggcgg agccagggca cgcgggtcag 1261 gcccctgggc cggccctgac tgactgggca aggatcaggg aggagcttgc gagtacaggt 1321 ccgcccgtgg tggccatgcc tgtagtgatt aagacagagg gacccgcctg gacccctctg 1381 gagccaaaat tgatcacaag actggctgat acggtcagga ccaagggctt acgatccccg 1441 atcactatgg cagaagtgga agcgcttatg tcctccccgc tgctgccgca tgacgtcacg 1501 aatctaatga gagttatttt aggacctgcc ccatatgcct tatggatgga cgcttgggga 1561 gtccaactac agacggttat agcggcagcc actcgcgacc cccgacaccc agcgaacggt 1621 caagggcggg gggaacggac taacttggat cgtttaaagg gtttggcgga tggaatggcc 1681 ggcaatccag agggtcacgc tgcattatta agaccggggg aactggttgc tattacggcg 1741 tcggctctcc aggcgtttag agaggtcgct cggttggcgg aacccacaga cccgtgggcg 1801 gaaattacgc agggaccatc tgagtccttt gtggattttg ccaatcgtct tataaaggcg 1861 gttgaagggt cagatctccc accttccgcg cgggctccgg tgatcattga ctgctttagg 1921 cagaagtcac agccagatat ccagcagctt atacgggcag caccctccac gctgaccacc 1981 ccaggagaga taatcaaata tgtgctagac aggcagaaga ctgcccctct tacggatcga 2041 ggcatagccg cggccatgtc gtctgctatt cagcccttag ttatggcagt agtcaataga 2101 gagagggatg gacaaactgg gtcgggtggt cgtgcccgag ggctctgcta cacttgtgga 2161 tccccgggac attatcaggc gcagtgcccg aaaaaacgaa agtcaggaaa cagccgtgag 2221 cgatgtcagt tgtgtgacgg gatgggacac aacgctaaac agtgcagaag gcgggatggc 2281 aaccagggcc aacgcccagg aagaggcctc tcttcggggc cgtggcccgt ctctcagcgg 2341 cctgctgtct cgttagcgat gacaatggaa cataaagatc gccccttggt tagggtcatt 2401 ctgactaaca ctgggagtca tccggtcaaa cagcgttcgg tgtatatcac cgcgctgttg 2461 gactctggag cggacatcac tattatttca gaggaggatt ggcccaccga ttggccagtg 2521 atggaggccg cgaacccgca gatccatggg ataggagggg gaattcccat gcgaaaatcc 2581 cgggatatga tagaggtggg ggttattaac cgagacgggt ctttggagcg acccctgctc 2641 ctcttccccg cagtagctat ggttagaggg agtatcctag gaagagattg tctgcagggc 2701 ctagggctcc gcttgacaaa tttataggga gggccactgt tcttactgtt gcgctacatc 2761 tggctattcc gctcaaatgg aagccagacc acacgcctgt gtggattgac cagtggcccc 2821 ttcctgaagg taaacttgta gcgctaacgc aattagtgga aaaagaatta cagttaggac 2881 atatagaacc ttcacttagt tgttggaaca cacctgtctt tgtgatccgg aaggcttccg 2941 ggtcttatcg cttattgcat gacttgcgcg ctgttaacgc caagcttgtt ccttttgggg 3001 ccgtccaaca gggggcgcca gttctctccg cgctcccgcg tggctggccc ctgatggtcc 3061 tagacctcaa ggattgcttc ttttctattc ctcttgcgga acaagatcgc gaagcttttg 3121 catttacgct cccctctgtg aataaccagg cccccgctcg aagattccaa tggaaggtct 3181 tgccccaagg gatgacctgt tctcccacta tctgtcagtt ggtggtgggt caggtacttg 3241 agcccttgcg actcaagcac ccatctctgc gcatgttgca ttatatggat gatcttttgc 3301 tagccgcctc aagtcatgat gggttggaag cggcagggga ggaggttatc agtacattgg 3361 aaagagccgg gttcaccatt tcgcctgata agatccagag ggagcccgga gtacaatatc 3421 ttgggtacaa gttaggcagt acgtatgtag cacccgtagg cttggtagca gaacccagga 3481 tagccacctt gtgggatgtt caaaagctgg tggggtcact tcagtggctt cgcccagcgt 3541 taggaatccc gccacgactg atgggcccct tttatgagca gttacgaggg tcagatccta 3601 acgaggcgag ggaatggaat ctagacatga aaatggcctg gagagagatc gtacagctca 3661 gcaccactgc tgccttggaa cgatgggacc ctgccctgcc tctggaagga gcggtcgcta 3721 gatgtgaaca gggggcaata ggggtcctgg gacagggact gtccacacac ccaaggccat 3781 gtttgtggtt attctccacc caacccacca aggcgtttac tgcttggtta gaagtgctca 3841 cccttttgat tactaagcta cgcgcttcgg cagtgcgaac ctttggcaag gaggttgatg 3901 tcctcctgtt gcctgcatgc tttcgggagg accttccgct cccggagggg atcctgttag 3961 cccttagggg gtttgcagga aaaatcagga gtagtgacac gccatctatt tttgacattg 4021 cgcgtccact gcatgtttct ctgaaagtga gggttaccga ccaccctgta ccgggaccca 4081 ctgtctttac cgacgcctcc tcaagcaccc ataagggggt ggtagtctgg agggagggcc 4141 caaggtggga gataaaagaa atagctgatt tgggggcaag tgtacaacaa ctggaagcac 4201 gcgctgtggc catggcactt ctgctgtggc cgacaacgcc cactaatgta gtgactgact 4261 ccgcgtttgt cgcgaaaatg ttactcaaga tgggacagga gggagtcccg tctacagcgg 4321 cggcttttat tttagaggat gcgttaagcc aaaggtcagc catggccgcc gttctccacg 4381 tgcggagtca ttctgaagtg ccagggtttt tcacagaagg aaatgacgtg gcagatagcc 4441 aagccacctt tcaagcgtat cccttgagag aggctaaaga tcttcatact gctctccata 4501 ttggaccccg cgcgctatcc aaagcgtgta atatatctat gcagcaggct agggaggttg 4561 ttcagacctg cccgcattgt aattcagccc ctgcgttgga ggccggggta aaccctaggg 4621 gtttgggacc cctacagata tggcagacag actttacgct tgagcctgga atggcccccc 4681 gttcctggct cgctgttact gtggataccg cctcgtcggc gatagtcgta actcagcatg 4741 gccgtgtcac atcggttgct gcgcaacatc attgggccac ggctatcgcc gttttgggaa 4801 gaccaaaggc cataaaaaca gataacgggt cttgcttcac gtctaaatcc acgcgagagt 4861 ggctcgcgag atgggggata gcacccacca cgggggattc ccagcctcac agacccccaa 4921 caagacagca gcccccgaca cgcaccgcac ccccagccgc tcctttggga ccgtggccac 4981 cgagcccaag ctcttcgggg gcttcaacac ttctgacacc gtcacgtcgc cgcagcgtgc 5041 cggggcactg gctggcggcg tcaccacttt cgtggctctc tacgactacg agtcccggac 5101 tgaaacggac ttgtccttca agaaaggaga acgcctgcag attgtcaaca acacggaagg 5161 tgactggtgg ctggctcatt ccctcactac aggacagacg ggctacatcc ccagtaacta 5221 tgtcgcgccc tcagactcca tccaggctga agagtggtac tttgggaaga tcactcgtcg 5281 ggagtccgag cggctgctgc tcaaccccga aaacccccgg ggaaccttct tggtccggga 5341 gagcgagacg acaaaaggtg cctattgcct ctccgtttct gactttgaca acgccaaggg 5401 gctcaatgtg aagcactaca agatccgcaa gctggacagc ggcggcttct acatcacctc 5461 acgcacacag ttcagcagcc tgcagcagct ggtggcctac tactccaaac acgctgatgg 5521 cttgtgccac cgcctgacca acgtctgccc cacgtccaag ccccagaccc agggactcgc 5581 caaggacgcg tgggaaatcc cccgggagtc gctgcggctg ggggtgaagc tggggcaggg 5641 ctgctttgga gaggtctgga tggggacctg gaacggcacc accagagtgg ccataaagac 5701 tctgaagccc ggcaccatgt ccccggaggc cttcctgcag gaagcccaag tgatgaagaa 5761 gctccggcat gagaagctgg ttcagctgta cgcagtggtg tcggaagagc ccatctacat 5821 cgtcactgag tacatgagca aggggagcct cctggacttc ctgaagggag agatgggcaa 5881 gtacctgcgg ctgccacagc tcgtcgatat ggctgctcag attgcatccg gcatggccta 5941 tgtggagagg atgaactacg tgcaccgaga cctgcgggcg gccaacatcc tggtggggga 6001 gaacctggtg tgcaaggtgg ctgactttgg gctggcacgc ctcatcgagg acaacgagta 6061 cacagcacgg caaggtgcca agttccccat caagtggaca gcccccgagg cggccctcta 6121 tggccggttc accatcaagt cggatgtctg gtccttcggc atcctgctga ctgagctgac 6181 caccaagggc cgggtgccat acccagggat ggtcaacagg gaggtgctgg accaggtgga 6241 gaggggctac cgcatgccct gcccgcccga gtgccccgag tcgctgcatg acctcatgtg 6301 ccagtgctgg cggaaggacc ctgaggagcg gcccactttt gagtacctgc aggccttcct 6361 ggaggactac ttcacctcga cagagcccca gtagacagcc cggatatttg cctctttctt 6421 tgctcctggt gtagctgcag cacaggcctt aagggagatt gaacgcttgg catgttggtc 6481 ggttaagcaa gcaaatttaa catcattagt attgaatgcg atgctggagg acgtgaacag 6541 catccggcac gcggtgttgc agaatcgagc agccatcgat ttcttactcc tggcgcaggg 6601 acacgggtgt caagacgtag aagggatgtg ttgcttcaat ctcagcgatc acagtgagtc 6661 cgttcacaag acgctccaag ccatgaagga acatacagag aagatacggg tggaagacga 6721 tcccataggg gattggttta cgcgcacgtt tggtagtttt ggagggtggc tcgcgaaagg 6781 tgttaagacg ctactgtttg cattgcttgt catagtctgt ctattagcta tcattccatg 6841 tataatcaag tgcttccagg actgtctatc gagaacaatg tatcagttcg tggatgaacg 6901 cataagatat catagaatta gggagcaact gtaggttccg aacgcgatgt gacgggaggc 6961 tgcgagggat attcggggga ataggagaat gcgaatcggg ctgtaacggg gcaaggcttg 7021 actgagggga ctataacatg tataggcgct gagcggggct tcggttgtac gcggatagga 7081 atcccctcag gacaattctg cttgaaatgt gatggcacct tcctgttttg cccttagact 7141 attcaagttg cctctgtgga ttaggactgg agacagctcg gatggtctga tggccaaata 7201 gagcaagcta gataagtagc tgcgaaatac gcttttgcat agggaggggg aaatgtagtc 7261 ttatgcaata ctcttatgta acgatgaaac agcaatatgc cttataagga gaaagaaggc 7321 actgtacacg ttgattggtg gaagtaaggt ggtatggtca tggtgtgatc gtgccttatt 7381 aggaagacaa cagacgggtc agacatggat tggacgatcc ccttagttcc gcgttgcaga 7441 gagattgtat ttaagtgcct agcttgatac aataaacgcc attttacctc ccaccacatt 7501 ggtgtgcacc tgggtagatg gacagaccgt tgagtcccta acgattgcga acacctgaat 7561 gaagctgaag gcttcatt //