LOCUS KU156826 7578 bp DNA linear VRL 14-MAY-2016 DEFINITION Avian leukosis virus strain GDQJ2, complete genome. ACCESSION KU156826 VERSION KU156826.1 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7578) AUTHORS Qiu,Q. TITLE Direct Submission JOURNAL Submitted (14-NOV-2015) College of Veterinary Medicine, South China Agricultural University, 483 Wushan Street, Tianhe District, Guangzhou, Guangdong 510642, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7578 /mol_type="genomic DNA" /country="China" /collection_date="01-Nov-2014" /host="chicken" /note="subgroup: J" /db_xref="taxon:11864" /strain="GDQJ2" /proviral /organism="Avian leukosis virus" repeat_region 1..325 /rpt_type=long_terminal_repeat gene 604..6999 /gene="env" CDS join(604..621,5302..6999) /codon_start=1 /protein_id="ANC96604.1" /gene="env" /translation="MEAVIKAFLTGHPGKVSKKDSKKKPPATSKKDPEKTPLLPSRGY FFFQMILVCVVTISVIPGVGGVHLLQQPGNVWVTWANKTGQTDFCLSLQSATSPFRTC LIGIPQYPLNTFEGYVTNVTACINDTDLASQTACLIQALNTTLPWDPQELDILGSQMI KNGTKRTCVTFGSVCYTENRTRVCQIFDGNFNGTGGAEAELRDFIAKWKGDDHLIRPY VNQSWTMVSPMNTESFSISSRYCGFTSNETRYYRGNFSDGSDWCGSKGGKWSAGYSNG TECSDGTADCGGNCTAEWNNYAYGFTFGGKPEILWNNGTAKALPPGIFLICGDRAWQG IPRNALGGPCYLGQLTMLSPNFTTWMTYGPNITSHRRSRRSTSQLSPDCSDELQLWSA TARIFASFFAPGVAAAQALREIERLACWSVKQANLTSLVLNAMLEDMNSIRHAVLQNR AAIDFLLLAQGHGCQDVEGMCCFNLSDHSESIHKALQAMKEHTEKIRVEDDPIGDWFT RTFGSLGGWLAKGVKTLLFALLVIVCLLAIIPCIIKCFQDCLSRTMYQFMDERIRYHR IREQL" /product="env protein" gene 604..2709 /gene="gag" CDS 604..2709 /codon_start=1 /protein_id="ANC96602.1" /gene="gag" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQEEGLLTSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLILGALKAAREEQGTSEQAKFWLGLGG GRVSPPGPECTEKPATERRIDKGKEARETTAQRDAKMAPEETATPKTVGASCYHCGTT IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPPGAEQPRAEPGHAGPAPGPA LTDWARVREELAGTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAEPTDPW AEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRKRDGNQGQRPGRGLSSG PWPGPDQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag protein" gene <2727..5348 /gene="pol" CDS <2727..5348 /codon_start=1 /protein_id="ANC96603.1" /gene="pol" /translation="TVALHLAIPLRWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQL GHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWP LMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDRLEAAGEEVISTLERAGFTISPDKIQ REPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPF YEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGV LGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPAC FREDLPLPEGILLALRGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTD ASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSAF VAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQ ATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNP RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERVNRLLKDKIR VLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTRTPIQKHWRPTVLTEGPPVKI RVETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPL FAGISDWAPWKGEQEGL" /product="pol protein" repeat_region 7295..7578 /rpt_type=long_terminal_repeat ORIGIN 1 ttgtagtctt atgcaatact cttatgtaac gatgaaacag caaaatgcct tataaggaag 61 aaaaggcact gtacacgccg attggtggaa gtagggtggt atgatcgtgg tatgatcgtg 121 ccttattagg aaggcaacag acgggccttg catggattgg acgaactcct tagttccgca 181 ttacagagat actgtattta agtgcctagc ttgatacaat aaacgccatt ttacctccca 241 ccatattggt gtgcacctgg gttgatggcc agaccaccga atccctaacg attgcgaaca 301 cctgtatgaa gcataaggct tcatttggtg accccgacgt gatagttagg gaatagtggt 361 cggccacaga cggcgtggcg atcctgctct catccgtctt gcttgatcgg ggagcggacg 421 atgacccttg tagagggggc tgcggcttag gggggcagaa gctgagtaac gtcggaggga 481 gctctactgc agggagccca cataccctac cgagaactca gagagtcgtt ggaagacggg 541 aaggaagccc gacgactgag cggtccgccc cagacgtggt tctggtcgcc cggaggatca 601 agcatggaag ccgtcataaa ggtgatttcg tccgcgtgta aaacctattg cggcaaaacc 661 tctccttcta agaaggaaat tggggccatg ttgtcccttt tacaagagga agggttgctt 721 acgtctccct cagacttata ctccccgggg tcctgggatc ccatcactgc agcgctctcc 781 cagcgggcaa tggtacttgg gaaatcggga gagttaaaaa cctggggatt gattttgggg 841 gcattgaagg cggctcgaga ggaacagggt acatctgagc aagcaaagtt ttggttggga 901 ttagggggag ggagggtctc tcccccaggt ccggagtgta ccgagaaacc agcaacggag 961 cggcggatcg acaaggggaa ggaagcgaga gagacaactg cgcagcgaga tgcgaagatg 1021 gcgccggagg aaacagccac acctaagacc gtcggcgcat cctgctacca ttgcggaaca 1081 accattggct gtaattgcgc cacagcctcg gcccctcctc ctccttatgt ggggagtggt 1141 ttgtatcctt ccctggcggg ggtgggagag cagcagggcc agggggggga cacgcctccg 1201 ggggcggaac agccaagggc ggagccaggg cacgcgggtc cggcccctgg gccggccctg 1261 accgactggg cgagggtcag ggaggagctt gcgggtacgg gtccgcccgt ggtggccatg 1321 cctgtggtga ttaagacaga gggacccgcc tggacccctc tggagccaaa attgatcaca 1381 agactggctg atacggtcag gaccaagggt ttacgatccc cgattactat ggcagaggtg 1441 gaagcgctta tgtcctcccc gctgctgccg catgacgtca cgaatttaat gagagtcatt 1501 ttaggacctg ccccatatgc cttatggatg gacgcttggg gagtccaact ccagacggtt 1561 atagcggcag ccactcgcga cccccgacac ccagcgaacg gtcaggggcg gggggaacgg 1621 actaacttgg atcgtttaaa gggtttggcg gatggaatgg ccggcaatcc agagggtcag 1681 gctgcattat taagaccggg ggaactggtc gctattacgg cgtcggctct ccaggcgttt 1741 agagaggtcg ctcggttggc ggaacccaca gacccgtggg cggaaattac gcagggacca 1801 tctgagtcct ttgtggattt tgccaatcgt cttataaagg cggttgaagg gtcagatctc 1861 ccaccttctg cgcgggctcc ggtgatcatt gactgcttta ggcagaagtc acagccagat 1921 attcagcagc ttatacgggc agcaccctcc acactgacca ccccaggaga gataatcaaa 1981 tatgtgctag acaggcagaa gactgcccct cttacggatc aaggcatagc cgcggctatg 2041 tcgtctgcta ttcagccctt agttatggca gtagtcaata gagagaggga tggacaaact 2101 gggtcgggtg gtcgtgcccg agggctctgc tacacttgcg gatccccggg acattatcag 2161 gcgcagtgcc cgaaaaaacg aaaatcagga aacagccgtg agcgatgtca gctgtgtgac 2221 gggatgggac acaacgctaa acagtgtagg aagcgggatg gcaaccaggg ccaacgccca 2281 ggaagaggtc tctcttcggg gccgtggccc ggccctgacc aacctgccgt ctcgttagca 2341 atgacaatgg aacataaaga tcgccctttg gttagggtca ttctgactaa cactgggagt 2401 catccagtca aacagcgttc ggtgtatatc accgcgctgt tggactccgg agcggacatc 2461 actattatct cggaggagga ttggcctact gattggccgg tggtggacac cgcaaacccg 2521 cagatccatg ggataggagg gggaattccc atgcgaaaat ctcgtgacat gatagagttg 2581 ggggttatta accgagacgg gtctttggag cgacccctgc tcctcttccc cgcagtagct 2641 atggtcagag ggagtatcct ggggagagat tgtctgcagg gcctagggct ccgcttgaca 2701 aatttatagg gagggccact gttcttactg ttgcgctaca tctggctatt ccgctcagat 2761 ggaagccaga ccacacgcct gtgtggattg accagtggcc ccttcctgag ggtaaacttg 2821 tagcgctaac gcaattagtg gaaaaggaat tacagttagg acatatagaa ccttcactta 2881 gttgctggaa cacacctgtc tttgtgatcc ggaaggcttc tgggtcttat cgcttattgc 2941 atgacttgcg cgctgttaac gccaagcttg ttccttttgg agccgtccaa cagggggcgc 3001 cagttctctc cgcgctcccg cgtggctggc ccctgatggt cttagacctc aaggattgct 3061 tcttttctat ccctcttgcg gaacaagatc gcgaagcttt tgcatttacg ctcccctctg 3121 tgaataacca ggcccccgct cgaagattcc aatggaaggt cttgccccaa gggatgacct 3181 gttctcccac tatctgtcag ttggtagtgg gtcaggtact tgagcccttg cgactcaagc 3241 acccatctct gtgcatgttg cattacatgg atgatctttt gctagcagcc tcaagtcatg 3301 acaggttgga agcggcaggg gaggaggtta tcagtacatt ggaaagagcc gggttcacca 3361 tttcgcctga taagatccag agggagcccg gagtacaata tcttgggtac aagttaggca 3421 gtacgtatgt agcacccgta ggcttggtag cagaacccag gatagccacc ttgtgggatg 3481 ttcaaaagct ggtggggtca cttcagtggc ttcgcccagc gttaggaatt ccgccacgac 3541 tgatgggccc cttctatgag cagttacgag ggtcagatcc taacgaggcg agggaatgga 3601 atctagacat gaaaatggct tggagagaga tcgtacagct tagcaccact gctgccttgg 3661 aacgatggga ccctgccctg cctctggagg gagcggtcgc taggtgtgaa cagggggcaa 3721 taggggtcct gggacaggga ctgtccacac acccaaggcc atgtttgtgg ttattctcca 3781 cccaacccac caaggcattt actgcttggc tagaagtgct cacccttttg attactaagc 3841 tacgtgcttc ggcagtgcga acctttggca aggaggttga tatcctcctg ttgcctgcat 3901 gctttcggga ggaccttccg ctcccggagg ggatcctgct agcccttagg gggtttgcag 3961 gaaaaatcag gagtagtgac acgccatcta ttttcgacat tgcgcgtcca ctgcatgttt 4021 ctctgaaagt gagggttacc gaccaccctg taccgggacc cactgtcttt accgacgcct 4081 cctcaagcac ccataagggg gtggtagttt ggagggaggg cccaaggtgg gagataaaag 4141 aaatagctga tttgggggca agtgtacaac aactggaagc acgcgctgtg gccatggcac 4201 ttctactgtg gccgacaacg cccactaatg tagtgactga ctccgcgttt gttgcgaaaa 4261 tgttactcaa gatgggacag gagggagtcc cgtctacagc ggcggctttt attttagagg 4321 atgcgttaag ccaaaggtca gccatggccg ccgttctcca tgtgcggagc cattctgaag 4381 tgccagggtt tttcacagaa ggaaatgacg tggcagatag ccaagccacc tttcaagcgt 4441 atcccttgag agaggctaaa gatcttcata ccgctctcca tattggaccc cgtgcgctat 4501 ccaaagcgtg taatatatct atgcagcagg ctagggaggt tgttcagacc tgcccgcatt 4561 gtaattcagc ccctgcgctg gaggctgggg taaaccctag gggtttggga cccctacaga 4621 tatggcagac agacttcacg cttgagccta gaatggcccc tcgttcctgg ctcgctgtta 4681 ccgtggatac cgcctcatcg gcgatagtcg taactcagca tggccgtgtc acatcggttg 4741 ctgcacaaca tcattgggcc acagctatcg ccgttttggg aagaccaaag gccataaaaa 4801 cagataacgg gtcctgcttc acgtctaaat ccacgcgaga gtggctcgcg agatggggga 4861 tagcacacac caccgggatt ccgggtaatt cccagggtca agctatggta gagcgggtca 4921 accggctgct gaaagataag atccgtgtgc ttgcggaggg ggacggtttt atgaaaagaa 4981 tccccaccag taagcaaggg gaactactag ccaaggcaat gtatgccctc aaccactttg 5041 agcgtggtga aaacacgaga acaccgatac agaaacactg gagacctacc gttcttacag 5101 aaggaccccc ggttaaaata cgagtagaga caggggagtg ggaaaaagga tggaacgtgc 5161 tggtctgggg acgaggttat gccgctgtga aaaacaggga cactgataag gttatttggg 5221 taccctctcg aaaagttaaa ccggacatca cccaaaagga tgaggtgact aagaaagatg 5281 aggcgagccc tctttttgca ggcatttctg actgggcacc ctggaaaggt gagcaagaag 5341 gactctaaga agaagccgcc agcaacaagc aagaaagacc cggagaagac acccttgctg 5401 ccatcgagag gttacttctt ctttcaaatg atacttgtgt gcgtggttac tatttccgtt 5461 atcccagggg tggggggagt tcatctgttg caacaaccgg gaaacgtatg ggtcacctgg 5521 gcaaataaga caggccaaac agatttttgc cttagtttac agtcagcaac ctcaccattc 5581 cgcacctgct tgataggcat tccacagtat cctctgaaca cctttgaggg gtatgtcact 5641 aatgttactg cttgcataaa cgacaccgat ttagccagcc aaacagcatg cttgatacag 5701 gctctaaata caaccctccc ttgggacccc caagaattgg atattttagg gtcccagatg 5761 atcaagaacg gaacaaaacg tacgtgtgtt acctttggtt cggtgtgcta tacagagaac 5821 agaacaagag tctgtcaaat atttgatggg aattttaatg ggactggtgg ggcagaagca 5881 gagttgcgtg acttcatagc aaaatggaaa ggtgatgacc atcttataag gccctatgtc 5941 aaccaatcat ggacgatggt aagtccaatg aacacagaga gtttttcaat aagtagtaga 6001 tattgtggat tcaccagcaa tgagactcgt tattatagag ggaacttttc tgatgggtct 6061 gattggtgtg gttcgaaagg gggaaaatgg tcggcgggat acagtaatgg gacagaatgt 6121 tccgatggca cggcggattg cggtggtaat tgcacggcgg aatggaacaa ttatgcatat 6181 gggtttacct tcgggggtaa gccagagata ttgtggaata atgggactgc taaggcactc 6241 cccccaggta ttttcttgat ttgtggggac agggcttggc aaggcatccc gcgtaatgcc 6301 ttgggagggc cctgttatct aggacaattg actatgctct ctcctaactt taccacctgg 6361 atgacgtatg ggccgaacat tacgagtcac cgccgtagca ggcgctcgac gagtcaactc 6421 tcgcctgact gcagtgacga gctacagcta tggagtgcga cagcccggat atttgcctct 6481 ttctttgctc ctggtgtagc cgcagcacag gctttaaggg agattgaacg cttggcatgc 6541 tggtcggtca agcaagcgaa tttaacatca ttagtattaa atgcaatgct ggaggacatg 6601 aacagcatcc ggcacgcggt attgcagaat cgagcagcca tcgatttctt actcctggcg 6661 cagggacacg ggtgtcaaga cgtggaaggg atgtgttgct tcaatcttag cgatcacagt 6721 gagtccattc acaaggcgct tcaagccatg aaggaacata cagagaagat acgggtggaa 6781 gacgatccca taggggattg gtttacgcgc acgtttggta gtcttggagg gtggctcgcg 6841 aaaggtgtta agacgctact gtttgcattg cttgtcatag tctgtctatt agctatcatt 6901 ccatgtataa tcaagtgctt tcaggattgt ctatcgagaa caatgtatca atttatggat 6961 gaacgcataa gatatcatag aattagggag cagttgtagg acataaagtg acgggaggct 7021 tgtaggggta ggaaacttgc gaatcgggct gtaacggggc aaggcttgac tgaggggact 7081 gcagcatgta taggcgctgg gcggggcttc ggttgtacgc ggataggaat cccctcagaa 7141 caattctgct tggtagcacc ctccctgttt tgcccttaga ctattcaagt tgcctctgtg 7201 gattagggct ggaggcagct cgggtggtct gatggccaaa taggagcaag ctagaaaggt 7261 aactatggaa tacgcttttg catagggagg gggaaatgta gtcttatgcg atactcttat 7321 gtaacgatga aacagcaaaa tgccttataa ggaagaaaag gcactgtaca cgccgattgg 7381 tggaagtagg gtggtatgat cgtggtatga tcgtgcctta ttaggaaggc aacagacggg 7441 ccttgcatgg attggacgaa ctccttagtt ccgcattaca gagatactgt atttaagtgc 7501 ctagcttgat acaataaacg ccattttacc tcccaccata ttggtgtgca cctgggttga 7561 tggccagacc accgatcc //