LOCUS KU934276 7626 bp DNA linear VRL 25-JUL-2016 DEFINITION Avian leukosis virus strain GX15MM6-2, complete genome. ACCESSION KU934276 VERSION KU934276.1 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7626) AUTHORS Wei,P., Wang,P.K., Zou,G.Z., Yang,Y.L. and Lin,L.L. TITLE Direct Submission JOURNAL Submitted (16-MAR-2016) Institute of Poultry Science and Health, Guangxi University, 100 Daxue Road, Nanning, Guangxi 530004, China FEATURES Location/Qualifiers source 1..7626 /mol_type="genomic DNA" /country="China: Maoming" /collection_date="2015" /host="chicken" /note="genotype: ALV-J" /db_xref="taxon:11864" /strain="GX15MM6-2" /proviral /organism="Avian leukosis virus" repeat_region 1..326 /rpt_type=long_terminal_repeat 5'UTR 225..602 CDS join(603..620,5301..6995) /codon_start=1 /protein_id="ANU06194.1" /translation="MEAVIKAFLTGHPGKVSKKDSKKKPPAASKKDPEKTPLLPSRGY FFFQMILVCVVIISVVPGVGGVHLLHQPGNVWVTWANKTGQTDFCLSLQSATSPFRTC LIGIPQYPLNTFEGYVTNVTACNNTELATQTACLIRTLNTTLPWDPQELDILGSQMIK NGTTRTCVTFGSVCYKENNSRVCHNFDGNFNGTGGAEAELRDFIEKWKSADSLIRPYI NQSWTMVSPINTESFSISSRYCGFTSNETRYYKGNLPDLSDWCSSKRGNWSAGYSNGT ARPSNTTSCAGNCTAEWNYYAYGFTFGNQPEVLWNNGTAKALPPGIFLICGDRAWQGI PRNALGGPCYLGQLTMLSPNFTTWMTYGPDITGHHRSRRSASRLSSDCSDEVQLWSAT ARIFASFFAPGVAAAQALKEIERLACWSVKQANLTSLILNAMLEDMNSIRHAVLQNRA AIDFLLLAQGHGCQDVEGMCCFNLSDHSESIHKTLQAMKEHTEKIQVEDDPIGDWFTR TFGDLGRWLAKGVKTLLFALLVIVCLLTIIPCIIKCFQDCLSRTMNQFMDDRIRYHRI MEQL" /product="env protein" CDS 603..2708 /codon_start=1 /protein_id="ANU06192.1" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPVTAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTAQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQEGDTPPGAEQPRAEPGHVSQAPGPA LTDWARVREELASTGPPVAAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVGALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNGRERCQLCDGMGHNAKQCRKRDGNQGQRPGRGLSSG PWPGPDQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag protein" CDS <2726..5347 /codon_start=1 /protein_id="ANU06193.1" /translation="TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQL GHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWP LMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKIQ REPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPF YEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGV LGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPAC FREDLPLPEGILLALRGFAGRIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTD ASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSAF VAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQ ATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNP RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIR VLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENIKTPIQKHWRPTVLTEGPPVKI RIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPL FAGISDWAPWKGEQEGL" /product="pol protein" 3'UTR 6996..7527 repeat_region 7302..7626 /rpt_type=long_terminal_repeat ORIGIN 1 tgtagtctta tgcaacactc ttatgtaacg atgaaacagc aatatgcctt ataagggaaa 61 aaagggcact gtacacggtg attggtggaa gcaaggtggt atgatcgtgg tatgatcgtg 121 ccttattagg aaggcaacag acgggtctga tatggattgg atgatcccct tagttccgct 181 ttgcagagat attgtattta agtgcctagc tcgatacaat aaacgccatt ttacctctca 241 ccacattggt gtgcacctgg gttgatggcc ggaccgttga ttccctaacg aatacgagca 301 cctgcatgaa gcgaaaggct tcatttggtg accccgacgt gatagttagg gaatagtggt 361 cggccaccga cggcgtggcg atcctgccct catccgtctc gcttaacggg gagcggacga 421 tgaccctagg agagggggct gcggcttagg agggcagacg ctgagtggcg tcggaaggag 481 ctctactgca gggagccaac acaccctacc gagcactcag agagtcgttg gaagacggga 541 aggaagcccg acgactgagc ggtccacccc agacgcggtt ctggtcgtcc ggaggatcaa 601 gtatggaagc cgtcataaag gtgatttcgt ccgcgtgtaa aacctattgc gggaaaacct 661 ctccttctaa gaaggaaata ggggccatgt tgtccctgtt acaaaaggaa gggttgctta 721 tgtctccctc agacttatat tccccggggt cctgggatcc cgttaccgcg gcgctctccc 781 agcgggctat ggtacttggg aaatcgggag agttaaaaac ctggggattg gttttggggg 841 cgttgaaagc ggctcgagag gaacaggtta catctgagca agcaaagttt tggttgggat 901 tagggggagg gagggtctct cccccaggtc cggagtgcat cgagaaacca gcaacggagc 961 ggcgaatcga caagggggag gaagtgggag aaacaactgc acagcgagat gcgaagatgg 1021 cgccggagga aacggccaca cctaaaaccg ttggcacatc ctgctatcat tgcggaacag 1081 ctattggctg taactgcgcc acagcctcgg ctcctcctcc tccttatgtg gggagtggtt 1141 tgtatccttc cctggcgggg gtgggagagc agcagggcca ggagggtgac acacctccgg 1201 gggcggaaca gccaagggcg gagccagggc atgtgagtca ggctcctggg ccggccctga 1261 ctgactgggc aagggtcagg gaggagcttg cgagtactgg tccgcccgtg gcggccatgc 1321 ctgtagtaat taagacagag ggacccgcct ggacccctct ggagccaaaa ttgatcacaa 1381 gactggctga tacggtcagg accaagggct tacgatcccc gattactatg gcagaagtgg 1441 gagcgcttat gtcctccccg ctgctgccgc atgacgtcac gaacctaatg agagttattt 1501 taggacctgc cccctatgcc ttatggatgg acgcttgggg agtccaactc cagacggtta 1561 tagcggcagc cactcgtgac ccccgacacc cagcgaatgg tcaggggcgg ggggaacgga 1621 ctaatttgga tcgcttaaag ggtttagctg atggaatggt gggcaaccca cagggtcagg 1681 ccgcattatt aagaccaggg gaattggttg ctattacggc gtcggctctt caggcgttca 1741 gagaggtcgc ccggctggcg gaacctgcag gtccatgggc ggacattacg cagggaccgt 1801 ctgagtcctt tgttgatttt gccaataggc ttataaaggc ggttgagggg tcagatctcc 1861 cgccttccgc gcgagctccg gtgatcattg actgctttag gcagaagtca cagcctgaca 1921 ttcagcagct tatacgggcg gcaccctcta cgctgaccac cccaggagag ataatcaaat 1981 atgtgctaga taggcagaag actgcccctc ttacggatca aggcatagcc gcggccatgt 2041 cgtccgctat ccagccctta gttatggcag tagtcaatag agagagggat ggtcaaactg 2101 ggtcgggtgg tcgtgcccga gggctctgtt acacttgcgg atccccggga cattatcagg 2161 cgcagtgccc gaaaaaacga aaatcaggaa acggccgtga gcgatgtcag ttgtgtgacg 2221 ggatgggaca caacgctaaa cagtgtagga agcgagatgg caaccagggc caacgcccag 2281 gaagaggtct ctcttcgggg ccgtggcccg gccctgacca gcctgccgtc tcgttagcga 2341 tgacaatgga acataaagat cgccctttgg ttagggtcat tctgactaac actgggagtc 2401 atccagtcaa acagcgttcg gtgtatatca ccgcgctgtt ggactctgga gcggacatca 2461 ctattatttc ggaggaggat tggcccactg attggccggt ggtggacact gcgaacccac 2521 agatccatgg cataggaggg ggaattccca tgcggaaatc tcgtgacatg atagagttgg 2581 gggttattaa ccgagacggg tctttggagc gacccctgct ccttttcccc gcagtagcta 2641 tggtcagagg aagtatcctg gggagagatt gtctgcaggg cctagggctc cgcttgacaa 2701 atttgtaggg agggccactg ttctcactgt tgcgctacat ctggctattc cgcttaaatg 2761 gaagccagac cacacgcctg tgtggattga ccagtggccc cttcctgaag gtaaacttgt 2821 agcgctaacg caattagtag aaaaagaatt acagttagga catatagagc cctcacttag 2881 ttgctggaac acgcctgtct ttgtgatccg gaaggcttcc gggtcgtatc gcttattgca 2941 tgatttgcgc gctgttaacg ccaagcttgt tccttttggg gccgtccaac agggggcgcc 3001 agttctttcc gcactcccgc gtggctggcc cctgatggtc ctagacctca aggactgctt 3061 cttttctatt cctcttgcgg aacaagatcg cgaagctttt gcatttacgc tcccctctgt 3121 gaacaaccag gcccccgctc gaagattcca atggaaggtc ttgccccaag ggatgacctg 3181 ttctcccact atctgtcagt tggtagtggg tcaggtactt gagcccttgc gactcaagca 3241 cccatctctg tgcatgttgc attatatgga tgatcttttg ctagccgcct caagtcatga 3301 tgggctggaa gcggcagggg aggaggttat cagtacattg gaaagagccg ggttcaccat 3361 ttcgcctgat aagatccaga gggagcccgg agtacaatat cttgggtaca agttaggcag 3421 tacgtatgtg gcacccgtag gcctggtagc agaacccagg atagccacct tgtgggatgt 3481 tcaaaagctg gtggggtcac ttcagtggct tcgcccagcg ttaggaatcc cgccacgact 3541 gatgggcccc ttttatgagc agttacgagg gtcagatcct aacgaggcga gggaatggaa 3601 tctagacatg aaaatggcct ggagagagat cgtacagctt agcaccactg ctgccttgga 3661 acgatgggac cctgccctgc ctctggaagg agcggtcgct agatgtgaac agggggcaat 3721 aggggtcctg ggacagggac tgtccacaca cccgaggcca tgtttgtggt tattctccac 3781 ccaacccacc aaggcattta ctgcttggtt agaagtgctc acccttttga ttactaagct 3841 acgtgcttcg gcagtgcgaa cctttggcaa ggaggttgat atcctcctgt tgcctgcatg 3901 ctttcgggag gacctcccgc tcccggaggg gatcctgtta gcccttaggg ggtttgcagg 3961 aagaatcagg agtagtgaca cgccatctat ttttgacatt gcgcgtccac tgcatgtttc 4021 tctgaaagtg agggttaccg accaccctgt accgggaccc actgtcttta ccgacgcctc 4081 ctcaagcacc cataaggggg tggtagtctg gagggagggc ccaaggtggg agataaaaga 4141 gatagctgat ttgggggcaa gtgtacaaca actggaagca cgcgctgtgg ccatggcact 4201 tctgctgtgg ccgacaacgc ccactaatgt agtgactgac tccgcgtttg ttgcaaaaat 4261 gttactcaag atgggacagg agggagtccc gtctacagcg gcggctttta ttttagagga 4321 tgcgctaagc caaaggtcag ccatggccgc cgtcctccac gtgcggagtc attctgaagt 4381 gccagggttt ttcacagaag gaaatgacgt ggcagatagc caagccacct ttcaagcgta 4441 tcccttgaga gaggctaaag atcttcatac tgctctccat attggacccc gcgcgctatc 4501 caaagcgtgt aatatatcta tgcagcaggc tagggaagtt gttcagacct gcccgcattg 4561 taattcagcc cctgcgttgg aggccggggt aaaccctagg ggtttgggac ccctacagat 4621 atggcagaca gactttacgc ttgagcctag aatggccccc cgttcctggc tcgctgttac 4681 tgtggatacc gcctcatcgg cgatagtcgt aactcagcat ggccgtgtca catcggttgc 4741 tgcacaacat cattgggcca cggctatcgc cgttttggga agaccaaagg ccataaaaac 4801 agataacgga tcctgcttca cgtctaaatc cacgcgagag tggctcgcga gatgggggat 4861 agcacacacc accgggattc cgggtaattc ccagggtcaa gctatggtag agcgggccaa 4921 ccggctcctg aaagataaga tccgtgtgct tgcggagggg gacggcttta tgaaaagaat 4981 ccccaccagc aaacaggggg aactactagc caaggcaatg tatgccctca atcactttga 5041 gcgtggtgaa aacataaaaa caccgataca aaaacactgg agacccaccg ttcttacaga 5101 aggacccccg gttaaaatac gaatagaaac aggggagtgg gaaaaaggat ggaacgtgct 5161 ggtctgggga cgaggttatg ccgctgtgaa aaacagagac actgataagg ttatttgggt 5221 accctctcga aaagtcaaac cggacatcac ccaaaaggat gaggtgacta agaaagatga 5281 ggcgagccct ctttttgcag gcatttctga ctgggcaccc tggaaaggtg agcaagaagg 5341 actctaagaa gaagccgcca gcggcaagca agaaagaccc ggagaagaca cccttgctgc 5401 catcgagagg ttacttcttc tttcaaatga tacttgtgtg cgtggttatt atttccgttg 5461 tcccaggggt ggggggagtt catctgttgc accaaccagg aaacgtgtgg gtcacctggg 5521 caaataagac aggccaaaca gatttttgcc ttagtctaca gtcagcgacc tcaccattcc 5581 gcacctgctt gataggcatc ccgcagtatc ctctgaacac ctttgagggg tatgtcacta 5641 atgttactgc ttgcaacaac accgagctag ccacccaaac agcatgcttg atacggactc 5701 taaatacaac cctcccttgg gacccccaag aattagatat tttggggtcc cagatgatca 5761 agaacggaac gacacgtacg tgtgttacct ttggttcggt gtgctataaa gagaacaaca 5821 gtagagtctg tcacaatttt gatgggaatt ttaatgggac cggtggggca gaagcagaat 5881 tgcgtgactt catagaaaaa tggaaaagcg ctgactctct tataaggccc tatatcaacc 5941 aatcatggac gatggtaagt ccaataaaca cagagagttt ttcaataagt agtagatatt 6001 gtggattcac cagcaatgag actcgttatt ataaagggaa ccttcctgat ctttctgatt 6061 ggtgtagttc aaaaagggga aattggtcag cggggtacag caacgggaca gcccgcccca 6121 gcaacacgac aagttgtgct ggtaattgca cagcggagtg gaattattat gcatacgggt 6181 ttaccttcgg gaatcagcca gaggtgttgt ggaacaatgg gactgctaag gcactccctc 6241 caggtatttt cttgatctgt ggggacaggg cttggcaagg tatcccgcgt aatgccttgg 6301 gagggccctg ttatctagga caattgacta tgctctctcc taactttacc acctggatga 6361 cgtatgggcc ggacattacg ggtcaccacc gtagcaggcg ctcggcgagt cgtctctcgt 6421 ctgactgcag tgacgaggta cagctatgga gtgcgacagc ccggatattt gcttctttct 6481 ttgctcctgg tgtagccgca gcacaggcct taaaggagat tgaacgcttg gcatgttggt 6541 cggttaagca agcgaattta acatcattaa tattgaatgc gatgctggag gacatgaaca 6601 gcatccggca cgcggtattg cagaatcgag cagccatcga tttcttactc ctggcgcagg 6661 gacacgggtg tcaagacgtg gaagggatgt gctgcttcaa tctcagcgat catagtgagt 6721 ccattcacaa gacgctccaa gccatgaagg aacatacaga gaagatacag gtggaagatg 6781 atcccatagg ggattggttt acgcgcacgt ttggtgatct aggaaggtgg ctcgcgaaag 6841 gtgttaagac gctgctgttt gccttgcttg tcatagtctg tctattaact atcattccat 6901 gtataatcaa gtgcttccag gattgtctat cgagaacaat gaatcagttt atggacgatc 6961 gcataagata tcatagaatt atggagcagc tgtaagttcc gaacgcgatg taacgggagg 7021 ctgccacggg tagggtttga aacttgcgaa tcgggctgta acggggcaag gcttgactaa 7081 ggggactgtg gcatgtatag gcgtaaagcg gggcttcggt tgtacgcggt taggagtccc 7141 cttaggatat agtagacacg cttttgcata acttccctgt tttgccctta gactattcaa 7201 gttgcctctg tggattaggg ctggaggcgg ctcggatggt ctgatggcca gataaggcga 7261 gcaagaaagc tatgaaatac gcttttgcat agggaggggg aaatgtagtc ttatgcaaca 7321 ctcttatgta acgatgaaac agcaatatgc ctcataaggg aaaaaagggc actgtacacg 7381 gtgattggtg gaagcaaggt ggtatgatcg tggtatgatc gtgccttatt aggaaggcaa 7441 cagacgggtc tgatatggat tggatgatcc ccttagttct gctttgcaga gatattgtat 7501 ttaagtgcct agctcgatac aataaacgcc attttacctc tcaccacgtt ggtgtgcacc 7561 tgggttgatg gccggaccgt tgattcccta acgactacga gcacctgcat caagcggaag 7621 gcttca //