LOCUS DQ115805 7688 bp DNA linear VRL 26-JUL-2016 DEFINITION Avian leukosis virus strain NX0101, complete genome. ACCESSION DQ115805 VERSION DQ115805.1 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7688) AUTHORS Cui,Z., Sun,S. and Wang,J. TITLE Reduced serologic response to Newcastle disease virus in broiler chickens exposed to a Chinese field strain of subgroup J avian leukosis virus JOURNAL Avian Dis. 50 (2), 191-195 (2006) PUBMED 16863066 REFERENCE 2 (bases 1 to 7688) AUTHORS Wu,Y. TITLE The mensuration and analysis of the complete genomic sequence of ALV-J NX0101 virus JOURNAL Unpublished REFERENCE 3 (bases 1 to 7688) AUTHORS Wu,Y., Zhang,J., Cui,Z., Jiang,S. and Wang,Z. TITLE Direct Submission JOURNAL Submitted (02-JUL-2005) College of Animal Science and Technology, Shandong Agriculture University, Daizong Street 61#, Taian, Shandong 271018, China FEATURES Location/Qualifiers source 1..7688 /mol_type="genomic DNA" /host="chicken" /note="subgroup: J" /db_xref="taxon:11864" /strain="NX0101" /isolate="China" /proviral /organism="Avian leukosis virus" repeat_region 1..325 /rpt_type=long_terminal_repeat /note="5' LTR" CDS join(604..621,5302..6993) /codon_start=1 /protein_id="AAZ20134.1" /translation="MEAVIKAFLTGHPGKVSKKDSKKKPPATSKKDPEKTPLLPSRGY FFFQTILACVVIISVVPGVGGVHLLQQPGNVWVTWANMTGRTDFCLSLQSATSPFRTC LIGIPQYPLNTFEGYVTNVTACDNNADLASQTACLIKALNTNLPWDPQKLDILGSQMI KNGTTRTCVTFGSMCYKENNHSRVCHNFDGNFNGTGGVEAELRDLIAKWGKGDPRIRP YVNQSWTMVSPINTESFSISSRYCGFTSNETRYYEGNFSNWCSSKGGEWSVGYSNGTD CSSNTTDCGGNCTAEWNYYAYGFTFGGKPEILWNNGTAKALPPGIFLICGDRAWQGIP RNALGGPCYLGQLTMLSPNFTTWITYGPNITGHRRSRRSPNHLSPDCNDEVQLWSVTA RIFASFFAPGVAAAQALKEIERLACWSVKQANLTSLILNAILEDTNSIRHAVLQNRAA IDFLLLAQGHGCQDVEGMCCFNLSDHSESIHKALQAMKEHTEKIRVEDDPIGDWFTRT FGGLGGWLAKGVKTLLFALLVIVCLLAIIPCIIKCFQDCLSRTMYQFMDERIRYHRIR EQL" /product="envelope protein" CDS 604..2709 /codon_start=1 /protein_id="AAZ20132.1" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSLSD LYSPGSWDPITAALTQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGRAGQAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAETTEPW AEITQGPSESFVDFPNLLIKPFEGSDLPLSARAPVIIDCFSQNSQPDIQQLIRPAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGNQGQRPGRGLSSG PWPVSQQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag polyprotein" /note="group antigen" CDS <2727..5348 /codon_start=1 /protein_id="AAZ20133.1" /translation="TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQL GHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAQLVPFGGRQQGAPILSAFRRGCP LMFLDLKGCFFFIPLAEQDREAFAFTLPSVNNQAPARRFQWKFLPQGMTCSPTICQLV VGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQ REPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPF YEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGV LGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPAC FREDLPLPEGILLALRGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTD ASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSAF VAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQ ATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSPPALEAGVNP KGLGPLQIWQTDFTLEPKMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIR VLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKI RIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPL FAGISDWAPWKGEQEGL" /product="pol polyprotein" /note="contains protease" repeat_region 7364..7688 /rpt_type=long_terminal_repeat /note="3' LTR" ORIGIN 1 tgtagtgtta tgcagtactc ttgtgtaacg atgaaacagc aatatgcctt ataaggaaga 61 aaaaggcact gtacacgttg attggtggaa gtaaggtggt atgatcatgg tatgatcgta 121 ccttattagg aaggcaacag acgggtctta tatggattgg acgagctcct tagttccgca 181 ttacagagat attgtattta agtgcctagc ctgacacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gttgatggcc ggaccgtcga ttccctgacg actacgcgca 301 cctgaatgaa gcggaaggct tcatttggtg accccgacgt gatagttagg gaatagtggt 361 cggccacaga cggcgtggcg atcctgtcct catccgtctc gcttattcgg ggagcgggcg 421 atgaccctaa tagagggggc tgcggcttag gagggcagaa gctgagtggc gtcggaggga 481 gctctactgc agggagccaa cataccctac cgagcactca gagagtcgtt ggaagacggg 541 aagaaagccc gacgactgag cggtccgccc cagacgtgat tctggtcgcc cggtggatca 601 agtatggaag ccgtcataaa ggtgatttcg tccgcgtgta aaacctattg cgggaaaacc 661 tctccttcta agaaggaaat aggggccatg ttgtccctgt tacaaaagga agggttgctt 721 atgtccctct cagacttata ttccccgggg tcctgggatc ccattaccgc ggcactcacc 781 cagcgggcaa tggtacttgg gaaatcggga gagttaaaaa cctggggatt ggttttgggg 841 gcattgaagg cggctcgaga ggaacaggtt acatctgagc aagcaaagtt ttggttggga 901 ttagggggag ggagggtctc tcccccaggt ccggagtgca tcgagaaacc agcaacggag 961 cggcgaatcg acaaggggga ggaagtggga gaaacaactg tgcagcgaga tgcgaagatg 1021 gcgccggagg aaacggccac acctaaaacc gttggcacat cctgctatca ttgcggaaca 1081 gctattggct gtaattgcgc cacagcctcg gcccctcctc ctccttatgt ggggagtggt 1141 ttgtatcctt ccctggcggg ggtaggagag cagcagggcc aggggggtga cacacctcgg 1201 ggggcggaac agccaagggc ggagccaggg cgcgcgggtc aggcccctgg gccggccctg 1261 actgactggg caaggatcag ggaggagctt gcgagtacag gtccgcccgt ggtggccatg 1321 cctgtagtga ttaagacaga gggacccgcc tggacccctc tggagccaaa attgatcaca 1381 agactggctg atacggtcag gaccaagggc ttacgatccc cgatcactat ggcagaagtg 1441 gaagcgctca tgtcctcccc gctgctgccg catgacgtca cgaatctaat gagagttatt 1501 ttaggacctg ccccatatgc cttatggatg gacgcttggg gagtccaact acagacggtt 1561 atagcggcag ccactcgcga cccccgacac ccagcgaacg gtcaagggcg gggggaacgg 1621 actaacttgg atcgtttaaa gggtttggcg gatggaatgg cgggcaatcc agagggtcag 1681 gctgcattat taagaccggg ggaactggtt gctattacgg cgtcggctct ccaggcgttt 1741 agagaggtcg ctcggttggc ggaaaccaca gaaccgtggg cggaaattac gcagggacca 1801 tctgagtcct ttgtggattt tcccaatctt ttaataaagc cgtttgaagg gtcagatctc 1861 ccactttccg cgcgggctcc ggtgatcatt gactgcttta gccagaattc acagccagat 1921 attcagcagc ttatacggcc agcaccctcc acgctgacca ccccaggaga gataatcaaa 1981 tatgtgctag acaggcagaa gactgcccct cttacggatc aaggcatagc cgcggccatg 2041 tcgtctgcta tccagccctt agttatggca gtagtcaata gagagaggga tggacaaact 2101 gggtcgggtg gtcgtgcccg agggctctgc tacacttgtg gatccccggg acattatcag 2161 gcgcagtgcc cgaaaaaacg aaagtcagga aacagccgtg agcgatgtca gctgtgtgac 2221 gggatgggac acaacgctaa acagtgcaga aggcgggatg gcaaccaggg ccaacgccca 2281 ggaagaggtc tctcttcggg gccgtggccc gtctctcagc agcctgccgt ctcgttagcg 2341 atgacaatgg aacataaaga tcgccccttg gttagggtca ttctgactaa cactgggagt 2401 catccggtca aacagcgttc ggtgtatatc accgcgctgt tggactctgg agcggacatc 2461 actattattt cagaggagga ctggcccacc gattggccag tgatggaggc cgcgaacccg 2521 cagatccatg ggataggagg gggaattccc atgcgaaaat cccgggatat gatagaggtg 2581 ggggttatta accgagacgg gtctttggag cgacccctgc tcctcttccc cgcagtagct 2641 atggttagag ggagtatcct aggaagagat tgtctgcagg gcctagggct ccgcttgaca 2701 aatttatagg gagggccact gttcttactg ttgcgctaca tctggctatt ccgctcaaat 2761 ggaagccaga ccacacgcct gtgtggattg accagtggcc ccttcctgaa ggtaaacttg 2821 tagcgctaac gcaattagtg gaaaaagaat tacagttagg acatatagaa ccttcactta 2881 gttgttggaa cacacctgtc tttgtgatcc ggaaggcttc cgggtcttat cgcttattgc 2941 atgacttgcg cgctgttaac gcccagcttg ttccttttgg gggccgccaa caaggggcgc 3001 caattctctc cgcgttccgg cgtggctgcc ccctgatgtt cttagacctc aagggttgct 3061 tcttttttat tcctcttgcg gaacaagatc gcgaagcttt tgcatttacg ctcccctctg 3121 tgaataacca ggcccccgct cgaagattcc aatggaagtt cttgccccaa gggatgacct 3181 gttctcccac tatctgtcag ttggtggtgg gtcaggtact tgagcccttg cgactcaagc 3241 acccatctct gcgcatgttg cattatatgg atgatctttt gctagccgcc tcaagtcatg 3301 atgggttgga agcggcaggg gaggaggtta tcagtacact ggaaagagcc gggttcacca 3361 tttcgcctga taaggtccaa agggagcccg gagtacagta tcttgggtac aagttaggta 3421 gtacgtatgt agcacccgta ggcctggtag cagaacccag gatagccacc ttgtgggatg 3481 ttcaaaagct ggtggggtca cttcagtggc ttcgccctgc attaggaatc ccgccacgac 3541 tgatgggccc cttttatgag cagttacgag ggtcagatcc taacgaggcg agggaatgga 3601 atctagacat gaaaatggcc tggagagaga tcgtacagct cagcaccact gctgccttgg 3661 aacgatggga ccctgccctg cctctggaag gagcggtcgc tagatgtgaa cagggggcaa 3721 taggggtcct gggacaggga ctgtccacac acccaaggcc atgtttgtgg ttattctcca 3781 cccaacccac caaggcgttt actgcttggt tagaagtgct cacccttttg attactaagc 3841 tacgcgcttc ggcagtgcga acctttggca aggaggttga tatcctcctg ttgcctgcat 3901 gctttcggga ggaccttccg ctcccggagg ggatcctgtt agcccttagg gggtttgcag 3961 gaaaaatcag gagtagtgac acgccatcta tttttgacat tgcgcgtcca ctgcatgttt 4021 ctctgaaagt gagggttacc gaccaccctg taccgggacc cactgtcttt accgacgcct 4081 cctcaagcac ccataagggg gtggtagtct ggagggaggg cccaaggtgg gagataaaag 4141 aaatagctga tttgggggca agtgtacaac aactggaagc acgcgctgtg gccatggcac 4201 ttctgctgtg gccgacaacg cccactaatg tagtgactga ctccgcgttt gttgcgaaaa 4261 tgttactcaa gatgggacag gagggagtcc cgtctacagc ggcggctttt attttagagg 4321 atgcgttaag ccaaaggtca gccatggccg ccgttctcca cgtgcggagt cattctgaag 4381 tgccagggtt tttcacagaa ggaaatgacg tggcagatag ccaagccacc tttcaagcgt 4441 atcccttgag agaggctaaa gatcttcata ccgctctcca tattggaccc cgcgcgctat 4501 ccaaagcgtg taatatatct atgcagcagg ctagggaggt tgttcagacc tgcccgcatt 4561 gtaattcacc ccctgcgttg gaggccgggg taaaccctaa gggtttggga cccctacaga 4621 tatggcagac agactttacg cttgagccta aaatggcccc ccgttcctgg cttgctgtta 4681 ctgtggatac cgcctcatcg gcgatagtcg taactcagca tggccgtgtc acatcggttg 4741 ctgcacaaca tcattgggcc acggctatcg ccgttttggg aagaccaaag gccataaaaa 4801 cagataacgg gtcctgcttc acgtctaaat ccacgcgaga gtggctcgcg agatggggga 4861 tagcacacac caccgggatt ccgggtaatt cccagggtca agctatggta gagcgggcca 4921 accggctcct gaaggataag atccgtgtgc ttgcggaggg ggacggcttt atgaaaagaa 4981 tccccaccag caaacagggg gaactactag ccaaggcaat gtatgccctc aatcactttg 5041 agcgtggtga aaacacaaaa acaccgatac aaaaacactg gagacctacc gttcttacag 5101 aaggaccccc ggttaaaata cgaatagaga cgggggagtg ggaaaaagga tggaacgtgc 5161 tagtctgggg acgaggttat gccgctgtga aaaacaggga cactgataag gttatttggg 5221 taccctctcg gaaggttaaa ccagacatca cccaaaagga tgaggtgact aagaaagatg 5281 aggcgagccc tctctttgca ggcatttctg actgggcacc ctggaaaggt gagcaagaag 5341 gactctaaga agaagccgcc agcaacaagc aagaaagacc cggagaagac acccttgctg 5401 ccatcgagag gttacttttt ctttcaaacg atacttgcgt gcgtggttat tatttccgtt 5461 gtcccagggg tggggggagt tcatctgttg caacaaccag gaaacgtgtg ggtcacctgg 5521 gcgaatatga cgggccgaac agatttttgc cttagtctac agtcagcgac ctcaccattc 5581 cgcacctgct tgataggcat tccacagtat cctctgaaca cctttgaggg atatgtcact 5641 aatgttactg cttgcgataa caacgccgat ttagccagcc aaacagcatg cttgataaag 5701 gctcttaaca caaacctccc ttgggacccc caaaaattgg atattttagg gtctcagatg 5761 atcaagaacg gaacaacacg tacgtgtgtt acctttggtt cgatgtgcta taaagagaac 5821 aatcacagca gagtctgcca caattttgat gggaatttta atgggactgg tggggtggaa 5881 gcagaattgc gtgacctcat agcaaaatgg ggcaaaggtg accctcgtat aagaccctat 5941 gtcaaccaat catggacgat ggtaagtcca ataaacacag agagtttttc aataagtagt 6001 agatattgtg gattcaccag taacgagact cgttactatg aagggaactt ttctaattgg 6061 tgcagttcaa aaggggggga atggtcagtg gggtacagca acgggacaga ttgttccagc 6121 aacacgacgg attgcggtgg taattgtaca gcggaatgga attattatgc atatgggttt 6181 accttcgggg gtaagccaga gatattgtgg aataatggga ctgctaaggc actcccacca 6241 ggtattttct tgatttgtgg ggacagggct tggcaaggca tcccgcgtaa cgccttggga 6301 gggccctgtt atctaggaca attgactatg ctctctccta actttaccac ctggataaca 6361 tatgggccga acattacggg tcaccgccgt agcaggcgct cgccgaatca tctctcgcct 6421 gactgcaatg acgaggtaca gctatggagt gtgacagccc ggatatttgc ttctttcttt 6481 gctcctggtg tagccgcagc acaggcctta aaggagattg aacgcttggc atgttggtcg 6541 gttaagcagg cgaatttaac atcattaata ttgaatgcga tactggagga tacgaacagt 6601 atccggcacg cagtgttgca gaatcgagca gccatcgact tcttactcct ggcgcaggga 6661 cacgggtgtc aagacgtgga agggatgtgt tgcttcaatc tcagcgatca tagtgagtcc 6721 attcacaagg cgcttcaagc catgaaggag catacagaga agatacgggt ggaagacgat 6781 cccatagggg attggtttac gcgcacgttt ggtggtcttg gagggtggct cgcgaaaggt 6841 gttaagacgc tgctgtttgc cttgcttgtc atagtctgtc tattagctat cattccatgt 6901 ataatcaagt gcttccagga ttgcctatcg agaacaatgt atcagtttat ggatgaacgc 6961 ataagatatc atagaattag ggagcagctg taggttccga acgtaatgta acgggaggct 7021 gcgagggata ttcgagagga ctgcttttgg ggcttgtagt tattttgttg ctagtagtgt 7081 gcctgccttg ccttttgcaa tttgtgacca gtagcgtccg aaggacgatt aataattcaa 7141 tcagctatca cacgaggttg taaaaggctt gtaggcagcc cgaaaatggg gcagtataaa 7201 acagtgcacg ggtaggggta tgaaacttgc gaatcgggct gtaacggggc aaggcttgac 7261 tgaggggacc atagtatgta taggcgaaag gcggggcttc ggttgtacgc ggttaggagt 7321 cccctcagga tatagtagtt gtgcttttgc atagggaggg ggaaatgtag tgttatgcag 7381 tactcttgtg taacgatgaa acagcaatat gccttataag gaaagaaaag gcactgtaca 7441 cgttgattgg tggaagtaag gtggtatgat catggtatga tcgtacctta ttaggaaggc 7501 aacagacggg tcttatatgg attggacgag ctccttagtt ccgcattaca gagatattgt 7561 atttaagtgc ctagcctgac acaataaacg ccattttacc tcccaccaca ttggtgtgca 7621 cctgggttga tggccggacc gtcgattccc tgacgactac gagcacctgc atgaagcgga 7681 tggcttca //