LOCUS HM452340 7498 bp DNA linear VRL 25-JUL-2016 DEFINITION Avian leukosis virus strain SDAU09C3, complete genome. ACCESSION HM452340 VERSION HM452340.1 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7498) AUTHORS Zhang,Q.C., Zhao,D.M., Wang,L. and Cui,Z.Z. TITLE Direct Submission JOURNAL Submitted (03-JUN-2010) College of Veterinary Medicine, Shandong Agricultural University, No. 61, Daizong Street, Taian, Shandong 271018, China FEATURES Location/Qualifiers source 1..7498 /mol_type="genomic DNA" /country="China" /isolation_source="plasma" /collection_date="Sep-2009" /host="layer chicken" /note="subgroup: A" /db_xref="taxon:11864" /strain="SDAU09C3" /proviral /organism="Avian leukosis virus" 5'UTR 1..400 repeat_region 1..21 /rpt_type=direct /note="R" repeat_region 22..101 /rpt_type=direct /note="U5" gene 401..6913 /gene="env" CDS join(401..418,5075..6913) /codon_start=1 /protein_id="ADO34847.1" /gene="env" /translation="MEAVIKMRRALFLQAFLTGRPGKVSKKDSKKKSPAISKKDPEKT PLLPTRVNYILIIGVLVLCEVTGVRADVHLLEQPGNLWITWANRTGQTDFCLSTQSAT SPFQTCLIGIPSPISEGDFKGYVSDTNCTILGTDRLVSSTSITGGPDNSTTLTYRKVS CLLSKLNVSMWDEPPELQLLGSQSLPNITNITQISGVTGGCVGFRPGGVPWYLGWTRQ EATRFLLRQSSFSNSTEPFTVVTADRHNLFMGSEYCGAYDYRFWEVYNCSQEQGQGQQ QYRCGKARSPRSGSPETQCIRRGGKWVNQSREINETEPFSFTVNCTASNLRNASGCCG KTGMILPGAWIDSTKGNFTKPKALPPGIFLICGDRAWQGIPSRPVGGPCYLGKLTMLA PNHTDILKILANSSRTGMRRKRSVSHLDDTCSDEVQLWGPTARIFASILAPGVAAAQA LREIERLACWSVKQANLTTSLLGDLLDDVTSIRHAVLQNRAAIDFLLLAHGHGCEDVA GMCCFNLSDHSESIQKKFQLIKEHVNKIGVDNDPIGSWLRGLFGGIGEWAVHLLKGLL LGLVVILLLVVCLPCLLQFVSSSIRKMIDNLLGYREECRKFQEANRQPERAV" /product="envelope polyprotein" /note="contains envelope surface (SU = gp85) and transmembrane (TM) proteins" gene 401..2506 /gene="gag" CDS 401..2506 /codon_start=1 /protein_id="ADO34845.1" /gene="gag" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTAQQDAKMAPEETATPKTVGASCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQEGQGGDTPRGAKQPRAEPGHAGPAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGSQGQRPGRGLSSG PWPGPDQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag polyprotein" gene <2521..5211 /gene="pol" CDS <2521..5211 /codon_start=1 /protein_id="ADO34846.1" /gene="pol" /translation="FTVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQ LGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGW PLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQL VVGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEEAGEEVINTLERAGFTVSPDKI QREPGVQYLGYKLGSTYAAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGP FYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIG VLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPA CFREDLPLPEGILLALRGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFT DASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSA FVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADS QATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVN PRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAI AVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI RVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVK IRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKAEVTKKDEASP LFAGISDWTPWKGEQEGLQEEVASNKQERPGEDTLAANES" /product="polymerase polyprotein" 3'UTR 6914..7498 repeat_region 7265..7498 /rpt_type=long_terminal_repeat repeat_region 7265..7477 /rpt_type=direct /note="U3" repeat_region 7478..7498 /rpt_type=direct /note="R" ORIGIN 1 gccattttac catccaccac attggtgtgc acctgggtag atggacagac cgtcgattcc 61 ctaacgatcg cgaacacctg aatgaatcag aaggcttcat ttggtgaccc cgacgtgatc 121 tcgttagggg atagtggtcg gccatagacg gcgtggcgat cctgtcctca tccgtcttgc 181 ttattcgggg agcggacgat gaccctggtg gagggggctg cggcttagga gggcagaagc 241 tgagtgacgt cggggggagc cctactgcag ggggctgaga taccctaccg agagctcaga 301 cagtcgttgg aagacgagga ggaagcccga cgactgagtg gtccgtatca ggcgcggttc 361 cggttgctct gcgtgattct ggtcgccccg tggatcaagc atggaagccg tcataaaggt 421 gatttcgtcc gcgtgtaaaa cctattgcgg gaaaacctct ccttctaaga aggaaatagg 481 ggccatgttg tccctgttac aaaaggaagg gttgcttatg tctccctcag acttatattc 541 cccggggtcc tgggatccca ttaccgcggc gctctcccag cgggctatgg tacttgggaa 601 atcgggagag ttaaaaacct ggggattggt tttgggggca ttgaaggcag ctcgagagga 661 acaggttaca tctgagcagg caaaattttg gttgggatta gggggaggga gggtctctcc 721 cccaggtccg gagtgcatcg agaaaccagc aacggagcgg cgaatcgaca agggggagga 781 agtgggagaa acaactgcgc aacaagatgc gaagatggcg ccggaggaaa cggccacacc 841 taagaccgtt ggcgcatcct gctatcattg cggaacagct attggctgta attgcgccac 901 agcctcggct cctcctcctc cttacgtggg gagtggtttg tatccttccc tggcgggggt 961 gggagagcag gagggccaag ggggtgacac acctcggggg gcgaaacagc caagggcgga 1021 gccagggcac gcgggtccgg cccctgggcc ggccctgact gactgggcaa ggatcaggga 1081 ggagcttgcg agtacaggtc cgcccgtggt ggctatgcct gtggtgatta agacagaggg 1141 acccgcctgg acccctctgg agccaaagtt gattacaaga ctggctgata cggttaggac 1201 caagggccta cgatccccga tcactatggc agaagttgaa gcgcttatgt cttccccgct 1261 gctgccgcat gacgttacga acctaatgag agttatttta ggacctgccc cgtatgcttt 1321 atggatggac gcttggggag tccaactaca gacggttata gcggcagcca ctcgcgaccc 1381 ccgacaccca gcgaatggtc aagggcgagg ggaacggact aacttggatc gcttaaaggg 1441 tttagctgat gggatggtgg gcaacccaca gggtcaggcc gcattattaa gaccggggga 1501 attggttgct atcacagcat cggctctcca ggcgtttaga gaggttgctc ggctggcgga 1561 acctgcaggc ccatgggcgg atatcacaca gggaccatct gagtcctttg ttgatttcgc 1621 taatcgtctt ataaaggcgg ttgaagggtc agatctccca ccttctgcgc gggctccggt 1681 gatcattgac tgctttaggc agaagtcaca gccagatatt cagcagctta tacgggcagc 1741 accctccacg ctgaccaccc caggagagat aatcaaatat gtgctagaca ggcagaagac 1801 tgcccctctt acggatcaag gcatagccgc ggccatgtcg tctgctatcc agcccttagt 1861 tatggcagta gtcaatagag agagggatgg gcaaactggg tcgggtggtc gtgcccgagg 1921 gctctgctac acttgcggat ccccgggaca ttatcaggcg cagtgcccga aaaaacgaaa 1981 gtcaggaaac agccgtgagc gatgtcagtt gtgtgacggg atgggacaca acgctaaaca 2041 atgcagaagg cgggatggca gccagggcca acgcccagga agaggcctct cttcggggcc 2101 gtggcccggc cctgaccagc ctgccgtctc gttagcgatg acaatggaac ataaagatcg 2161 ccccttggtt agggtcattc tgactaatac tgggagtcat ccagtcaaac aacgttcggt 2221 gtatatcacc gcgctgttgg actccggagc ggacatcact attatttcgg aggaggattg 2281 gcctactgat tggccggtgg tggacaccgc gaacccacag atccatggca taggaggggg 2341 aatccccatg cgaaaatctc gtgacatgat agagttgggg gttattaacc gagacgggtc 2401 tttggagcga cccctgctcc tcttccccgc agtggctatg gttagaggga gtattctggg 2461 gagagattgt ctgcagggcc tagggctccg cttgacaaat ttatagggag ggccactgtt 2521 tttactgttg cgctacatct ggctatcccg ctcaaatgga agccagacca cacgcctgtg 2581 tggattgacc agtggcccct ccctgaaggt aaacttgtag cgctaacgca attagtggaa 2641 aaggaattgc agttaggaca tatagaacct tcacttagtt gctggaacac acctgtcttt 2701 gtgatccgga aggcttccgg gtcttatcgc ttattgcatg acttgcgtgc tgttaacgcc 2761 aagcttgttc cttttggggc cgtccaacag ggggcgccag ttctctccgc gctcccgcgt 2821 ggctggcccc tgatggtcct cgacctcaag gattgcttct tttccattcc tctcgcggaa 2881 caagatcgcg aagcttttgc atttacgctc ccctctgtga ataaccaggc tcccgctcga 2941 agattccaat ggaaggtctt gccccagggg atgacctgtt ctcccactat ctgtcagttg 3001 gtagtgggtc aggtgcttga gcccttgcga ctcaagcacc catctctgtg catgctgcat 3061 tatatggatg atcttttgct agccgcctca agtcatgatg ggctggaaga ggcaggggag 3121 gaggttatca atacattgga aagagccggg ttcaccgttt cgcctgataa gatccagagg 3181 gagcccggag tacaatacct tgggtacaag ttaggcagta cgtatgcagc gcccgtaggc 3241 ttggtagcag aacccaggat agccaccttg tgggatgttc aaaagctggt ggggtcactt 3301 cagtggcttc gcccagcgtt aggaatcccg ccgcgactga tgggcccctt ttatgagcag 3361 ttacgagggt cagatcccaa cgaggcgagg gaatggaacc tagacatgaa aatggcttgg 3421 agagagatcg tacagcttag caccactgct gccttggaac gatgggaccc tgccctgcct 3481 ctggaaggag cggtcgctag atgtgaacag ggggcaatag gggtcctggg acagggactg 3541 tccacacacc caaggccatg cttgtggtta ttttccaccc aacccaccaa ggcgtttact 3601 gcttggttag aagtgctcac ccttttgatt actaagctac gtgcttcggc agtgcgaacc 3661 tttggcaagg aggttgatat cctcctgtta cctgcatgct ttcgggagga ccttccgctc 3721 ccggagggga tcctgttagc ccttaggggg tttgcaggaa aaatcaggag tagtgacacg 3781 ccatctattt ttgacattgc gcgtccactg catgtttctc tgaaagtgag ggttactgac 3841 caccctgtac cgggacccac tgtctttact gacgcctcct cgagcaccca taagggggtg 3901 gtagtttgga gggagggccc aaggtgggag ataaaagaaa tagctgattt gggggcaagt 3961 gtacaacaac tggaagcacg cgctgtggcc atggcacttc tgctgtggcc gacaacgccc 4021 actaatgtgg tgactgactc tgcgtttgtt gcgaaaatgt tactcaagat gggacaggag 4081 ggagtcccgt ctacagcggc ggcttttatt ttagaggatg cgttaagcca aaggtcagcc 4141 atggccgccg ttctccacgt gcggagtcat tctgaagtgc cagggttctt cacagaagga 4201 aatgacgtgg cagatagcca agccaccttt caagcgtatc ccttgagaga ggctaaagat 4261 cttcatactg ctctccatat tggaccccgc gcgctatcca aagcgtgtaa tatatctatg 4321 cagcaggcta gggaggttgt tcagacctgc ccgcattgta attcagcccc tgcgttggag 4381 gccggggtaa accctagggg tttgggaccc ctacagatat ggcagacaga ctttacgctt 4441 gaacctagaa tggcccctcg ttcctggctc gccgttactg tggataccgc ctcatcggcg 4501 atagtcgtaa ctcagcatgg ccgtgtcaca tcggttgctg cacaacatca ttgggccacg 4561 gctatcgccg ttttgggaag accaaaggcc ataaaaacag ataatgggtc ctgcttcacg 4621 tctaaatcca cgcgggagtg gctcgcgaga tgggggatag cacacaccac cgggattccg 4681 ggtaattccc agggtcaagc tatggtagag cgggccaacc ggctcctgaa agataagatc 4741 cgtgtgcttg cggaggggga cggctttatg aaaagaatcc ccaccagcaa acagggggaa 4801 ctactagcca aggcaatgta tgccctcaat cactttgagc gtggtgaaaa cacaaaaaca 4861 ccgatacaaa aacactggag acctaccgtt cttacagaag ggcccccggt taaaatacga 4921 atagagacag gggagtggga aaaaggatgg aacgtgctgg tctggggacg aggttatgcc 4981 gctgtgaaaa acagggacac tgataaggtt atttgggtac cctctcgaaa agttaaaccg 5041 gacatcaccc aaaaggctga ggtgactaag aaagatgagg cgagccctct ttttgcaggc 5101 atttctgact ggacgccctg gaaaggtgag caagaaggac tccaagaaga agtcgccagc 5161 aataagcaag aaagacccgg agaagacacc cttgctgcca acgagagtta attacattct 5221 cattattggt gtcctggtct tgtgtgaggt tacgggggta agagctgatg tccacttact 5281 cgagcagcca gggaaccttt ggattacatg ggccaaccgt acaggccaaa cggatttctg 5341 cctctctaca cagtcagcca cctccccttt tcaaacatgt ttgataggta tcccgtcccc 5401 tatttccgaa ggtgatttta aggggtatgt ctctgataca aattgcacca tcttgggaac 5461 tgaccgatta gtctcgtcaa ccagcattac tggcggccct gacaacagca ccaccctcac 5521 ttatcgaaag gtttcatgct tgctgtcaaa gctgaatgtc tctatgtggg atgagccacc 5581 ggaactacag ctgctaggtt cccagtctct ccctaacatt actaatatta ctcagatctc 5641 tggtgtaacc ggaggatgcg taggctttag accaggaggg gtcccctggt atctaggatg 5701 gactagacag gaagccacac ggttcctcct tagacaatcc tccttttcta attccacgga 5761 accatttacg gtggtgacag cggatagaca caatctgttt atggggagtg agtactgtgg 5821 tgcatatgac tacagatttt gggaagtata taactgctca caagaacagg gtcagggcca 5881 acagcaatac cgctgtggca aggcacgcag cccccgctcg ggttctcctg aaacccagtg 5941 cataaggaga ggaggtaaat gggttaatca atcacgggag attaatgaaa cggagccgtt 6001 cagctttacg gtgaactgta cagctagcaa tttgcgtaat gccagtgggt gctgcggaaa 6061 aacaggtatg atcctcccag gggcatggat cgacagcaca aaaggtaatt tcaccaaacc 6121 aaaagcgcta ccacccggaa ttttcctcat ttgtggggat cgcgcgtggc aaggaattcc 6181 cagtcgtccg gtagggggcc cctgctattt aggcaagctt accatgttag cacccaacca 6241 cacagatatt ctcaaaattc ttgctaattc atcgcgaaca ggtatgagac gtaaacgaag 6301 cgtctcacac ctggatgata catgctcaga tgaagtgcag ctttggggtc ctacagcaag 6361 aatctttgca tctatcttag ccccgggggt agcagctgcg caagccttaa gagaaatcga 6421 gagactagcc tgttggtccg ttaaacaggc taatttgaca acatcactcc tcggggactt 6481 attggatgat gttacgagta ttcgacacgc ggtcctacag aaccgagcgg ctattgactt 6541 cttgctccta gctcacggcc atggctgtga ggacgttgct ggaatgtgtt gtttcaatct 6601 gagtgatcac agtgagtcta tacagaagaa attccagcta ataaaggaac atgtcaataa 6661 gatcggcgtg gacaacgacc caatcggaag ttggctgcga ggattattcg ggggaatagg 6721 ggaatgggcc gttcatttgc tgaaaggact gcttttgggg cttgtagtta tcttgttgct 6781 agtagtgtgc ctgccttgcc tcttgcagtt tgtatctagt agtattcgga agatgattga 6841 taatttactc ggctatcgcg aggaatgcag gaaattccaa gaggccaata ggcagcccga 6901 aagagcagta taggcggatt cttgtattcc gtgtgatagc tggttggatc gttaatcgat 6961 cagctggcgc gcggagtgca ggaagtcgct aaaggctgca gaatatctcc tgtcgctttg 7021 acaatcgctt aaaatgatac cgcaaatagt gtgcttaggg ttaggacatg catagaacgt 7081 agcagtataa agtagtacat aggtacatgg gtggtggcgt gaaagttgtg aatcgggctg 7141 taacggggca aggcttgact gaggggacaa tagcatgtat aggcggaaag cggggcttcg 7201 gttgtacgcg gttaggagtc ccctcaggat atagtggtta cacctttgca tagggagggg 7261 gaaatgtagt cttacgcaat aacattatgt aacgatgaaa cagcaacatg ccttataagg 7321 agagaaaagg cactgtacat gacgattggt ggaagtgagg tggtatgatc atgccttatt 7381 aggaaggtat cagacgggtc taacagggat tggacgaact ccttatttcc acattgcgga 7441 gatattgtat ttaagtgcct agcttgatac aataaacgcc attttaccat ccaccaca //