LOCUS JX855935 7628 bp DNA linear VRL 08-DEC-2012 DEFINITION Avian leukosis virus isolate CLB908M, complete genome. ACCESSION JX855935 VERSION JX855935.1 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7628) AUTHORS Shulpin,M.I., Nikonova,Z.B., Lazareva,S.P. and Mudrak,N.S. TITLE Study of distribution of neoplastic diseases of retroviral etiology of birds in commercial poultry farms of Russian Federation JOURNAL Unpublished REFERENCE 2 (bases 1 to 7628) AUTHORS Shulpin,M.I., Nikonova,Z.B., Lazareva,S.P. and Mudrak,N.S. TITLE Direct Submission JOURNAL Submitted (20-SEP-2012) Federal Service for Veterinary and Phytosanitary Surveillance, Federal Governmental Budgetary Institution, Federal Centre for Animal Health (FGBI ARRIAH), Yur'evets, Vladimir, Vladimirskaya oblast 600901, Russia FEATURES Location/Qualifiers source 1..7628 /mol_type="genomic DNA" /country="Russia: Chelyabinskaya oblast" /isolation_source="liver" /collection_date="Aug-2009" /host="Gallus gallus" /note="subgroup: J" /db_xref="taxon:11864" /isolate="CLB908M" /proviral /organism="Avian leukosis virus" gene 593..7006 /gene="env" CDS join(593..610,5291..7006) /codon_start=1 /protein_id="AFY23252.1" /gene="env" /translation="MEAVIKAFLTGHPGKVSKKDSKKKPPATSKKDPEKTPLLPSRGC FSFQMILVCVVIISAVPGVGGVHLLPQPGNVWVTWANKTGQTDFCLSLQSATSPFRTC LIGIPQYPLDTFKGYVTNVTACQNDTDLASQTACLIQALNTTLPWDPQELDILGSQMI KNGTTRTCVTFGSVCYKENNRSRVCHIFDGNFNGTGGAEAELRDFIAKWKNDDRLIRP YVNQSWTMVSPINTESFSISSRYCGFTSNETRYYGGNVSNWCGSKGGEWSAGYSNGTE CSNGTADCGGNCTAEWNYYAYGFTFGKQPEVLWNNGTAKALPPGIFLICGDRAWQGIP RNAVGGPCYLGQLTMLSPNFTTWITYGPNITGHRRSRRSVHHLSDDCSDEVQLWSATA RIFASIFAPGVAAAQALREIERLACWSVKQANLTSLVLNAMLEDMNSVRHAVLQNRAA IDFLLLAQGHGCQDVEGMCCFNLSDHSESIHKTLQAMREHVNKIGVDSDPIGSWLRGL FGGIGEWAVHLLKGLLLGLVVILLLIVCLPCLLQLVSSSIRKMINNSISYHTEYKKLQ RACGQPESRIV" /product="envelope protein" gene 593..2698 /gene="gag" CDS 593..2698 /codon_start=1 /protein_id="AFY23253.1" /gene="gag" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLTSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVRETTVQRDAKMAPEETATPRTVGTSCYRCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGDDTPRGAEQPRAEPGHAGLAPGPA LTDWARIREELAGTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGPGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRKRDSNQGQRPGRGLSSG PWPGPEPPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPADWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag protein" gene <2716..5337 /gene="pol" CDS <2716..5337 /codon_start=1 /protein_id="AFY23254.1" /gene="pol" /translation="TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQL GHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWP LMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLI VGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQ REPGVQYLGYKLGSTYVAPVGLVAEPKITTLWDVQKLVGSLQWLRPALGIPPRLMGPF YEQLRGSDPNEAREWNLDMKTAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGV LGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPAC FREDLPLPEGILLALKGFAGKIRSSDTPTIFDIARPLHVSLKVRVTDHPVLGPTVFTD ASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTAPTNVVTDSAF VAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQ ATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNP RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAVVVTQHGRVTSVAAQHHWATAIA VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIR VLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKI RIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPL FAGISDWAPWEGEQEGL" /product="polymerase protein" ORIGIN 1 tgtagtgtta tgcaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggaaag 61 aaagggtacc gtgcatgatg actggtggaa gtaaagtggt acgatcatgc cttattagga 121 aggtaacaga cgggtctaac acggattgga cgaactcctt agttccgcat tgcagagata 181 ttgtatttaa gtgcctaacc tgatacaata aacgccattt tacctcccac cacattggtg 241 tgcacctggg ttgatggccg gaccgtcgat tccctgacga ccacgagcac ctgcatgaag 301 cagaaggctt catttggtga ccccgacgtg attgttaggg aatagtggtc ggccacagac 361 ggcgtggcga tcctgtcctc atccgtctcg ctcattcggg gagcggacga tgaccctagg 421 agagggggct gcggcttagg agggcagaag ctgagtagcg tcggagggag ctctactgca 481 gggagccaac atacctcacc gagcactcag agagtcgttg gaagacggga aggaagcccg 541 acgactgagc ggtccacccc agacgcggtt ttggtcgccc ggaggatcaa gcatggaggc 601 cgtcataaag gtgatttcgt ccgcgtgtaa aacctattgc gggaaaacct ctccttctaa 661 gaaggaaata ggggccatgt tgtccctgct acaaaaggaa gggttgctta cgtctccctc 721 agacttatat tccccggggt cctgggatcc cattaccgcg gcgctctccc agcgggctat 781 ggtacttggg aaatcgggag agttaaaaac ctggggattg gttttggggg cattgaaggc 841 ggctcgagag gaacaggtta catctgagca agcaaagttt tggttgggat tagggggagg 901 gagggtctct cccccaggtc cggagtgcat cgagaaacca gcaacggagc ggcgaatcga 961 caagggggag gaagtgagag aaacaactgt gcagcgagat gcgaagatgg cgccggagga 1021 aacggccaca cctagaaccg ttggcacatc ctgctatcgt tgcggaacag ctattggctg 1081 taattgcgcc acagcctcgg cccctcctcc tccttatgtg gggagtggtt tgtatccttc 1141 cctggcgggg gtgggagagc agcagggcca gggggatgac acacctcggg gggcggaaca 1201 gccaagggcg gagccagggc acgcgggtct ggcccctggg ccggccctga ctgactgggc 1261 aaggatcagg gaggagcttg cgggtacagg tccgcccgtg gtggccatgc ctgtagtgat 1321 caagacagag ggacccgcct ggacccctct ggagccaaaa ttgatcacaa gactggctga 1381 tacggtcagg accaagggct tacgatcccc gatcactatg gcagaagtgg aagcgcttat 1441 gtcctccccg ctgctgccgc atgacgtcac gaatctaatg agagttatct taggacctgc 1501 cccatatgcc ctatggatgg acgcttgggg agtccaactc cagacggtta tagcggcggc 1561 cacccgcgac ccccgacacc cagcgaacgg tcaggggcgg ggggaacgga ctaacttgga 1621 tcgcttaaag ggcttagcgg atgggatggt gggcaacccg cagggtcagg ccgcgttgct 1681 aagaccgggg gaattggttg ctattacggc gtcggctctc caggcgttta gagaggttgc 1741 ccggctggcg gaacctgcag gtccatgggc ggacatcaca cagggaccat ctgagtcttt 1801 tgttgatttt gccaatcggc ttataaaggc ggttgaaggg tcagatctcc caccttccgc 1861 gcgggctcca gtgattattg actgctttag gcagaagtca cagccagata ttcagcagct 1921 tatacgggca gcaccctcca cgctgaccac cccaggagag ataatcaaat atgtgctaga 1981 caggcagaag actgcccctc ttacggatca aggtatagct gcagccatgt catctgctat 2041 ccaaccctta gttatggcag tagtcaatag agagagggat ggacaaactg ggccgggtgg 2101 tcgtgcccga gggctctgct acacttgtgg atccccggga cattatcagg cgcagtgccc 2161 gaaaaaacga aagtcaggaa acagccgtga gcgatgtcag ttgtgtgacg ggatgggaca 2221 caacgctaaa cagtgtagga agcgggatag caaccagggc caacgcccag gaagaggtct 2281 ctcttcgggg ccgtggcccg gccctgagcc gcctgccgtc tcgttagcga tgacgatgga 2341 acataaagat cgccccttgg ttagggtcat tctgactaac actgggagcc atccggtcaa 2401 acaacgttcg gtgtatatca ccgcgctgtt ggactccgga gcggacatca ctattatttc 2461 ggaggaggat tggcctgctg attggccggt ggtggacacc gcgaacccac agatccatgg 2521 cataggaggg ggaattccca tgcgaaaatc tcgtgacatg atagagttgg gggttattaa 2581 ccgagacggg tccttggagc gacccctgct cctcttcccc gcagtagcta tggttagagg 2641 gagtatcctg ggaagagact gtctgcaggg cctagggctc cgcttgacaa atttataggg 2701 agggccactg ttcttactgt tgcgctacat ctggctatcc cgctcaaatg gaagccggac 2761 cacacgcctg tgtggatcga ccagtggccc cttcctgagg gtaaacttgt agcgctaacg 2821 caattagtgg aaaaggaatt acagttagga catatagaac cttcgcttag ttgttggaac 2881 actcctgtct ttgtgatccg gaaggcttcc gggtcttatc gcttattgca tgacttgcgc 2941 gctgttaacg ccaagcttgt tccttttggg gccgtccaac agggggcgcc agttctctct 3001 gcgctcccgc gtggctggcc cctgatggtc ctagacctta aggattgctt cttctctatc 3061 cctcttgcgg aacaagatcg cgaagctttt gcatttacgc tcccctctgt gaataaccag 3121 gcccccgctc gaaggttcca atggaaggtc ttgcctcaag ggatgacctg ttctcccact 3181 atctgtcagt tgatagtggg tcaggtactc gagcccttgc gactcaagca cccatccctg 3241 cgcatgctgc attatatgga tgatcttttg ctagccgcct caagtcatga tgggttggaa 3301 gcggcagggg aggaggttat cagtacattg gaaagagccg ggttcaccat ttcgcctgat 3361 aaggtccaga gggagcccgg agtacaatat cttgggtaca agttaggtag tacgtatgta 3421 gcacccgtgg gcctggtagc agaacccaag ataaccacct tgtgggatgt tcaaaagctg 3481 gtggggtcac ttcagtggct tcgccctgcg ctaggaatcc cgccacgact gatgggcccc 3541 ttttatgagc agttacgagg ctcagatcct aacgaggcga gggaatggaa tctagacatg 3601 aaaacggcct ggagagagat tgtacagctt agcaccactg ctgccttgga acgatgggac 3661 cctgccctgc ctctggaagg agcggtcgct agatgtgaac agggggcaat aggggtccta 3721 ggacagggac tgtccacaca tccaaggcca tgcttgtggt tattctccac ccaacccacc 3781 aaggcgttta ctgcttggtt agaagtgctc acccttttga tcactaagct acgtgcttcg 3841 gcagtgcgaa cctttggcaa ggaggttgat atcctcctgt tgcctgcatg ctttcgggag 3901 gaccttccgc tcccggaggg gatcctgtta gcccttaagg ggtttgcagg aaaaatcagg 3961 agtagtgaca cgccaactat ttttgacatt gcgcgtccac tgcatgtttc tctgaaagtg 4021 agggttaccg accaccctgt actgggaccc actgtcttta ctgacgcctc ctcaagcacc 4081 cataaagggg tggtagtctg gagggagggc ccaaggtggg agataaaaga aatagctgat 4141 ttgggggcaa gtgtacaaca actggaagca cgcgctgtgg ccatggcact tctgctgtgg 4201 ccgacagcgc ccactaatgt agtgactgac tccgcgtttg ttgcgaaaat gttactcaag 4261 atgggacagg agggagtccc gtctacagcg gcggctttta ttttagagga tgcgttaagc 4321 caaaggtcag ccatggccgc cgttcttcac gtgcggagtc attctgaagt gccagggttt 4381 ttcacagaag ggaatgacgt ggcagacagc caagccactt tccaagcgta tcccttgaga 4441 gaggctaaag atcttcatac tgctctccat attgggcccc gcgcgctatc caaagcgtgt 4501 aatatatcta tgcagcaggc tagggaggtt gttcagacct gcccgcattg caattcagcc 4561 cctgcattgg aggccggggt aaaccctagg ggtttgggac ccctacagat atggcagaca 4621 gactttacgc ttgagcctag aatggctccc cgttcctggc tcgctgttac tgtggatacc 4681 gcctcatcgg cggtagtcgt aactcagcat ggccgtgtca catcggttgc tgcacaacat 4741 cattgggcca cggctatcgc cgttttggga agaccaaagg ccataaaaac agataatggg 4801 tcctgcttca cgtctaaatc cacgcgagag tggctcgcga gatgggggat agcacacacc 4861 actgggattc cgggtaattc ccagggtcaa gctatggtag agcgggccaa ccggctcctg 4921 aaggataaga tccgtgtact tgcggagggg gacggcttta tgaaaagaat ccccaccagc 4981 aaacaggggg aactactagc taaggcaatg tatgccctta atcactttga gcgtggtgaa 5041 aacacaaaaa caccgataca aaaacactgg agacctactg ttcttacaga aggacccccg 5101 gttaaaatac gaatagagac gggggagtgg gagaaaggat ggaacgtgct ggtctgggga 5161 cgaggttatg ccgctgtgaa aaacagggac actgataagg ttatttgggt accctctcga 5221 aaagttaaac cggacatcac ccaaaaggat gaggtgacta agaaagatga ggcgagccct 5281 ctttttgcag gcatttctga ctgggcaccc tgggaaggtg agcaagaagg actctaagaa 5341 gaagccgcca gcaacaagca agaaagaccc ggagaagaca cccttgctgc catcgagagg 5401 ttgcttctcc tttcaaatga tacttgtgtg cgtggttatt atttccgctg tcccaggggt 5461 ggggggagtt catctgttgc cacaaccagg aaacgtgtgg gtcacctggg caaataagac 5521 gggccaaaca gatttttgcc ttagtctaca gtcagcaacc tcaccattcc gtacctgctt 5581 aataggcatt ccacagtatc ctctggacac ctttaaggga tacgtcacta atgtcactgc 5641 ttgccaaaac gataccgact tagccagtca aacagcatgc ttgatacagg ctctaaatac 5701 aaccctccct tgggaccccc aagaattgga tattttaggg tcccagatga tcaagaacgg 5761 aacaacacgt acgtgtgtta cctttggttc ggtgtgctat aaagagaaca atcgcagtag 5821 agtctgtcac atttttgatg ggaattttaa tgggactggt ggggcggaag cagaattgcg 5881 tgacttcata gcaaaatgga aaaatgatga ccgtcttata aggccctatg tcaaccaatc 5941 gtggacgatg gtaagtccaa taaacacaga gagtttttca ataagtagta gatattgtgg 6001 attcaccagc aatgagaccc gttattatgg agggaacgtt tctaattggt gtggttcaaa 6061 agggggagaa tggtcagcgg gatacagtaa tgggacagaa tgttccaatg gcacggcgga 6121 ttgtggtggt aattgcacag cggaatggaa ttattatgca tatgggttta ccttcgggaa 6181 acagccagag gtgttgtgga acaatgggac tgctaaggca ctcccaccag gtattttctt 6241 gatttgtggg gacagggctt ggcaaggcat cccgcgtaat gccgtgggag ggccctgtta 6301 tctaggacaa ttgaccatgc tctctcctaa ctttaccacc tggataacat atggaccgaa 6361 cattacgggt caccgccgta gcaggcgctc agtgcatcat ctctcggatg actgcagtga 6421 cgaggtacag ctatggagtg cgacagcccg gatattcgct tctatctttg ctcctggtgt 6481 agcagcagca caggccttaa gggagatcga acgcttggca tgttggtcgg ttaagcaagc 6541 gaatttaaca tcattagtat tgaatgcgat gctggaggac atgaacagtg tccgacacgc 6601 ggtgttgcag aatcgagcag ccatcgattt cttactcctg gcgcagggac acgggtgtca 6661 agacgtggaa gggatgtgtt gcttcaatct cagcgatcat agtgagtcca ttcacaagac 6721 gctccaagcc atgagggaac atgtcaataa gatcggcgtg gacagcgacc caatcggaag 6781 ttggctacga gggctattcg gaggaatagg agaatgggcc gttcatttac tgaaaggact 6841 gcttttgggg cttgtagtta ttttgttgtt aatagtgtgc ctgccttgcc ttttacagct 6901 tgtatctagt agcatccgaa agatgataaa taattccatc agctaccaca cggaatataa 6961 gaagctgcaa agggcgtgtg ggcagcctga aagcagaata gtataaggca gtatatgggt 7021 ggaggtatag cgcttgcgag tcgggctgta acggggcatg gcttaactaa ggggactatg 7081 gcatgtatag gcgtaaagcg gggcttcggt tgtacgcggt taggagtccc cttaggatat 7141 agtagacacg cttttgcata accttcttag actattcaag ttgcctctat ggattagggc 7201 tggaggcagc tcggatggtc tgatggccag ataaggcggg caagaaagct atgaaatacg 7261 cttttgcata gggaggggga aatgtagtct tacacagtaa tgttatgtaa cgatgaaaca 7321 gcaaaacgcc ttataaggaa agaaagggta ccgtgcatga tgactggtgg aagtaaagtg 7381 gtacgatcat gccttattag gaaggtaaca gacgggtcta acacggattg gacgaactcc 7441 ttagttccgc attgcagaga tattgtattt aagtgcctaa cctgatacaa taaacgccat 7501 tttacctccc accacattgg tgtgcacctg ggttgatggc cggaccgtcg attccctgac 7561 aactacgagc acctgcatga agcggatggc ttcaaactac gagcacctgc atgaagcgga 7621 tggcttca //