LOCUS KU605774 7482 bp DNA linear VRL 03-AUG-2016 DEFINITION Avian leukosis virus isolate GD14LZ, complete genome. ACCESSION KU605774 VERSION KU605774.1 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7482) AUTHORS Li,X., Lin,W., Chang,S., Zhao,P., Zhang,X., Liu,Y., Chen,W., Li,B., Shu,D., Zhang,H., Chen,F. and Xie,Q. TITLE Isolation, identification and evolution analysis of a novel subgroup of avian leukosis virus isolated from a local Chinese yellow broiler in South China JOURNAL Arch. Virol. (2016) In press PUBMED 27422398 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 7482) AUTHORS Li,X., Lin,W., Zhang,X., Dai,Z., Li,G., Chen,F., Bi,Y. and Xie,Q. TITLE Direct Submission JOURNAL Submitted (27-JAN-2016) College of Animal Science, South China Agricultural University, 483 Wushan Street, Tianhe Distric, Guangzhou, Guangdong 510642, Peopel's Repubic of China COMMENT ##Assembly-Data-START## Assembly Method :: DNASTAR v. 7.0 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7482 /mol_type="genomic DNA" /country="China" /isolation_source="blood plasma" /collection_date="2014" /host="Chinese local yellow broiler" /db_xref="taxon:11864" /isolate="GD14LZ" /proviral /organism="Avian leukosis virus" repeat_region <1..274 /rpt_type=long_terminal_repeat /note="5'LTR" CDS join(555..572,5253..7043) /codon_start=1 /protein_id="ANW72067.1" /translation="MEAVIKAFLTGYPGETSKKDSKEKPLATSKKDPEKTPLLPTRVN YILIIGVLVLCSSTGVRADVHLLEQPGNLWITWANRTGQTDFCLSTQSATSPFQTCLI GIPSPISEGDFRGYVSDNCTTLGTDRLVSSADITGGPDNSTTLTYRKVSCLLSKLNVP MWDEPPELQLLGSQSLPNITNIAQISGVAGGCVAFGPRSIDTLSDWSRPQLTRWLLLR RNYTEPFTVVTADRHNLFRGREYCGTYGYRFWKLYNCSQTGSRYRCGRVPVGGLPETG CTRTGGKWVNQSKEINETEPFSFTANCIASNLGNVSGCCGKTPTTLPPGAWIDSTRGG FTKPKALPPAIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPNHTDILKVLANSSRTG IRRKRSISHLDDTCSDEVQLWGPTARIFASILAPGVAAAQALREIERLACWSAKQANL TTSLLGDLLDDVTSIRHAVLQNRAAIDFLLLAHGHGCEDVAGMCCFNLSDHSESIQKK FQLMKEHVNKIGVDSDPIGSWLRGLFGGIGEWAVHLLKGLLLGLVVILLLVVCLPCLL QFVSSSIRKMINNSISYHTEYKKLQKACRQPENGAV" /product="envelope" /note="envelope protein" CDS 555..2660 /codon_start=1 /protein_id="ANW72068.1" /translation="MEAVIKVISSTCKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREERVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEGTATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGLAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAEPTDPW AEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGNQGQRPGRGLSSG PWPVSEQPAVSLAMTMEHKDRPLVRIVPTCSGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag" /note="gag protein" CDS <2678..5365 /codon_start=1 /protein_id="ANW72069.1" /translation="TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQL GHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWP LMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKIQ REPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLEWLRPALGIPSRLMSPF YEQLRGSDPNEAREWNLDMKMAWREIIQLSTTAALERWDPALPLEGAVARCEQGAIGV LGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPAY LREDLPLPEGILLALRGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTD ASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSAF VAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQ ATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNP RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIR VLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKI RIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPL FAGISDWIPWGDKQEGLQGETASNKQERPGEDTLAANES" /product="polymerase" repeat_region 7210..>7482 /rpt_type=long_terminal_repeat /note="3'LTR" ORIGIN 1 tgtagtcaaa tagagccaga ggcaacttga atagtctaaa gaccaaataa ggaaaaagca 61 agacattcca tatgctcatt ggtggcaact agataaggaa ggaatgacgc aaggacagat 121 gggcgtagac gaagctatgt acgattatat aagctgttgc caccatcaaa taaacgccat 181 tttaccattc accacattgg tgtgcacctg ggtagatgga cagaccgttg agtccctaac 241 gattgcgaac acctgaatga agcagaaggc ttcatttggt gaccccgacg tgatcgttag 301 ggaatagtgg tcggccacag acggcgtggc gatcctgccc tcatccgtct tgcttaatcg 361 gggagcagac gatgacccta gtagaggggg ctgcggctta ggagggcgga agctgagtgg 421 cgtcggaggg agctctactg cagggagcca gaacatccta ccgagaactc agagagtcgt 481 tggaagacgg gaaggaagcc cgacgactga gcagtccacc ccaggcgcga ttctggtcgc 541 tctgtggatc aagcatggaa gccgtcataa aggtgatttc gtccacgtgt aaaacctatt 601 gcgggaaaac ctctccttct aagaaggaaa taggggccat gctgtccctg ttacaaaagg 661 aagggttgct tatgtctccc tcagacttat attccccggg gtcctgggat cccattaccg 721 cggcgctctc ccagcgggca atggtacttg ggaaatcggg agagttaaaa acctggggat 781 tggttttggg ggcattgaag gcggctcgag aggaacgggt tacatctgag caagcaaagt 841 tttggttggg attaggggga gggagggtct ctcccccagg tccggagtgc atcgagaaac 901 cagcaacgga gcggcgaatc gacaaggggg aggaagtggg agaaacaact gtgcagcgag 961 atgcgaagat ggcgccggag ggaacggcca cacctaaaac cgttggcaca tcctgctatc 1021 attgcggaac agctattggc tgtaattgcg ccacagcttc ggcccctcct cctccttatg 1081 tggggagtgg tttgtatcct tccctggcgg gggtgggaga gcagcagggc caagggggtg 1141 acacacctcg gggggcggaa cagccaaggg cggagccagg gcacgcgggt ctggcccctg 1201 ggccggccct gactgactgg gcaaggatca gggaggagct tgcgagtaca ggtccgcccg 1261 tggtggccat gcctgtagtg attaagacag agggacccgc ctggacccct ctggagccaa 1321 aattgatcac aagactggct gatacggtca ggaccaaggg cttacgatcc ccgatcacta 1381 tggcagaagt ggaagcgctt atgtcctccc cgctgctgcc gcatgacgtc acgaatctaa 1441 tgagagttat tctaggacct gccccatatg ccttatggat ggacgcttgg ggagtccaac 1501 tacagacggt tatagcggca gccactcgcg acccccgaca cccagcgaac ggtcaagggc 1561 ggggggaacg gactaacttg gatcgtttaa agggtttggc ggatggaatg gccggcaatc 1621 cagagggtca ggctgcatta ttaagaccgg gggaactggt tgctattacg gcgtcggctc 1681 tccaggcgtt tagagaggtc gctcggttgg cggaacccac agacccgtgg gcggaaatta 1741 cgcagggacc atctgagtcc tttgtggatt ttgccaatcg tcttataaag gcggttgaag 1801 ggtcagatct cccaccttcc gcgcgggctc cggtgatcat tgactgcttt aggcagaagt 1861 cacagccaga tattcagcag cttatacggg cagcaccctc tacgctgacc accccaggag 1921 agataatcaa atatgtgcta gacaggcaga agactgcccc tcttacggat caaggcatag 1981 ccgcggccat gtcgtctgct attcagccct tagttatggc agtagtcaat agagagaggg 2041 atggacaaac tgggtcgggt ggtcgtgccc gagggctctg ttacacttgt ggatccccgg 2101 gacattatca ggcgcagtgc ccgaaaaaac gaaagtcagg aaacagccgt gagcgatgtc 2161 agctgtgtga cgggatggga cacaacgcca aacagtgcag aaggcgggat ggcaaccagg 2221 gccaacgccc aggaagaggc ctctcttcgg ggccgtggcc cgtctctgag cagcctgccg 2281 tctcgttagc gatgacaatg gaacataaag atcgcccctt ggtaagaatc gttccgacct 2341 gcagtgggag tcacccggtc aaacagcgtt cggtgtatat caccgcgctg ttggactctg 2401 gagcggacat cactattatt tcagaggagg actggcccac cgattggcca gtgatggagg 2461 ccgcgaaccc gcagatccat gggataggag ggggaattcc catgcgaaaa tcccgggata 2521 tgatagaggt gggggttatt aaccgagacg ggtctttgga gcgacccctg ctcctcttcc 2581 ccgcagtagc tatggttaga gggagtatcc taggaagaga ttgtctgcag ggcctagggc 2641 tccgcttgac aaatttatag ggagggccac tgttcttact gttgcgctac atctggctat 2701 tccgctcaaa tggaagccag accacacgcc tgtgtggatt gaccagtggc cccttcctga 2761 aggtaaactt gtagcgctaa cgcaattagt ggaaaaagaa ttacagttag gacatataga 2821 accttcactt agttgttgga acacacctgt ctttgtgatc cggaaggctt ccgggtctta 2881 tcgcttattg catgacttgc gcgctgttaa cgccaagctt gttccttttg gggccgtcca 2941 acagggggcg ccagttctct ccgcgctccc gcgtggctgg cccctgatgg tcctagacct 3001 caaggattgc tttttttcta ttcctcttgc ggaacaagat cgcgaagctt ttgcatttac 3061 gctcccctct gtgaataacc aggcccccgc tcgaagattc caatggaagg tcttgcccca 3121 agggatgacc tgttctccca ctatctgtca gttggtagtg ggtcaggtac ttgagccctt 3181 gcgactcaag cacccatctc tgcgcatgtt gcattatatg gatgatcttt tgctagccgc 3241 ctcaagtcat gatgggttgg aagcggcagg ggaggaggtt atcagtacat tggaaagagc 3301 cgggttcacc atttcgcctg ataagatcca gagggagccc ggagtacaat atcttgggta 3361 caagttaggc agtacgtatg tagcacccgt aggcctggta gcagaaccca ggatagccac 3421 cttgtgggat gttcaaaagc tggtaggatc tctagagtgg cttcgcccag cgttaggaat 3481 cccgtcacga ctgatgagcc ccttttatga gcagttacga gggtcagatc ctaacgaggc 3541 gagggaatgg aatctagaca tgaaaatggc ctggagagag atcatacagc ttagcaccac 3601 tgctgccctg gaacgatggg accctgccct gcctctggaa ggagcggtcg ctagatgtga 3661 acagggggca ataggggtcc tgggacaggg actgtccaca cacccaaggc catgtttgtg 3721 gttattctcc actcaaccca ccaaggcgtt tactgcttgg ttagaagtgc tcaccctttt 3781 gattactaaa ctacgcgctt cggcagtgcg aacctttggc aaggaggttg atatcctcct 3841 gttgcctgca taccttcggg aggaccttcc gctcccggag gggatcctgt tagcccttag 3901 ggggtttgca ggaaaaatca ggagtagtga cacgccatct atttttgaca ttgcgcgtcc 3961 actgcatgtt tctctgaaag tgagggttac cgaccaccct gtaccgggac ccactgtctt 4021 taccgacgcc tcctcaagca cccataaggg ggtggtagtc tggagggagg gcccaaggtg 4081 ggagataaaa gaaatagctg atttgggggc aagtgtacaa caactggaag cacgcgctgt 4141 ggccatggca cttctgctgt ggccgacaac gcccactaat gtagtgactg actccgcgtt 4201 tgttgcgaaa atgctactca agatgggaca ggagggagtc ccgtctacag cggcggcttt 4261 tatcttagag gatgcgttaa gccaaaggtc agccatggcc gccgttctcc acgtgcggag 4321 tcattctgaa gtgccagggt ttttcacaga aggaaatgac gtggcagata gccaagccac 4381 ctttcaagcg tatcccttga gagaggctaa agatcttcat actgctctcc atattggacc 4441 ccgcgcgcta tccaaagcgt gtaatatatc tatgcagcag gctagggagg ttgttcagac 4501 ctgcccgcat tgtaattcag cccctgcgtt ggaggccggg gtaaacccta ggggtttggg 4561 acccctacag atatggcaga cagactttac gcttgagcct agaatggccc cccgttcctg 4621 gctcgctgtt actgtggata ccgcctcatc ggcgatagtc gtaactcagc atggccgtgt 4681 cacatcggtt gccgcacaac atcattgggc cacggctatc gccgttttgg gaagaccaaa 4741 ggccataaaa acagataacg ggtcctgctt cacgtctaaa tccacgcgag agtggcttgc 4801 gagatggggg atagcacaca ccaccgggat tccgggtaat tcccagggtc aagctatggt 4861 agagcgggcc aaccggctcc tgaaagataa gatccgtgtg cttgcggagg gggacggctt 4921 tatgaaaaga atccccacca gcaaacaggg ggaactacta gccaaggcaa tgtatgccct 4981 caatcacttt gagcgtggtg aaaacacaaa aacaccgata caaaaacact ggagacctac 5041 tgttcttaca gaaggacccc cggttaaaat acgaatagag acaggggagt gggaaaaagg 5101 atggaacgtg ttggtctggg gacgaggtta tgccgctgtg aaaaacaggg acactgataa 5161 ggttatttgg gtaccctctc gaaaggttaa accggacatc acccaaaagg atgaggtgac 5221 taagaaagat gaggcgagcc ctctttttgc aggcatttct gactggatac cctggggaga 5281 caagcaagaa ggactccaag gagaaaccgc tagcaacaag caagaaagac ccggagaaga 5341 cacccttgct gccaacgaga gttaattata ttctcattat tggtgtcctg gtcttgtgtt 5401 cgtcgacggg ggtaagagct gatgtccact tactcgagca gccagggaac ctttggatta 5461 catgggccaa ccgtacaggc caaacggatt tctgcctctc tacacagtca gccacctccc 5521 cttttcaaac atgtttgata ggtatcccgt cccctatttc cgaaggtgat tttaggggat 5581 acgtctctga taattgcacc accttgggaa ctgaccggtt agtctcgtca gccgacatta 5641 ccggcggccc tgacaacagc accaccctca cttatcgaaa ggtttcatgc ttgctgtcaa 5701 agctgaatgt ccctatgtgg gatgagccac cggaactaca gctgctcggt tcccagtctc 5761 tccctaacat tactaatatt gctcagatct ctggcgtagc cgggggatgc gtagctttcg 5821 gcccccggag cattgacacg ctttcagatt ggtccaggcc gcaactcacg aggtggctcc 5881 tcctccgccg caactacaca gaaccgttta cggtggtgac agcggataga cacaatcttt 5941 ttagggggag ggagtactgc ggtacatatg gttacagatt ctggaaactg tataattgct 6001 cacagacagg ttctaggtac cgctgtggac gcgtgcctgt cgggggcctc cctgagaccg 6061 ggtgcacacg cacaggaggt aaatgggtta atcagtcaaa ggaaattaat gagacagagc 6121 cgttcagttt tactgcgaac tgtatagcta gtaatttggg taatgtcagc ggatgttgtg 6181 ggaaaacgcc cacgactctc ccaccagggg cgtggattga cagcacacgg ggcggtttca 6241 ctaaaccaaa agcactacca cccgcaattt tcctcatttg tggggatcgc gcatggcaag 6301 gaattcccag tcgtccggta gggggcccct gctatttagg caagcttacc atgttagcac 6361 ccaaccatac agatattctc aaggtgcttg ctaattcatc gcggacaggt ataagacgta 6421 aacgaagcat ctcacacctg gatgatacat gctcagatga agtgcagctt tggggtccta 6481 cagcaagaat ctttgcatct atcttagccc cgggggtagc agctgcgcaa gccttaagag 6541 aaatcgagag actagcctgt tggtctgcta aacaggctaa tttgacaaca tcactcctcg 6601 gggacttatt ggatgatgtc acgagtattc gacacgcggt cctgcagaac cgagcggcta 6661 ttgacttctt gcttctagct cacggccatg gctgtgagga cgttgccgga atgtgttgtt 6721 tcaatctgag tgatcacagt gagtctatac agaagaagtt ccagctaatg aaggaacatg 6781 tcaataagat cggcgtggac agcgacccaa tcggaagttg gctgcgagga ttattcgggg 6841 gaatagggga atgggccgtt catttgctga aaggactgct tttggggctt gtagttattt 6901 tgttgctagt agtgtgcctg ccttgccttt tgcaatttgt gtccagtagc atccgaaaga 6961 tgattaataa ttcaatcagc tatcacacgg aatataagaa gttgcaaaag gcttgtaggc 7021 agcccgaaaa tggagcagtg taaagcagta cgtgggtggt ggtatgaaac ttgcgaatcg 7081 ggctgtaacg gggcaaggct tgactggggg gaccatagtt tgtataggcg aaaggcgggg 7141 cttcggttgt acgcggttag gagtcccctc aggatatagt agttgcgctt ttgcataggg 7201 agggggaaat gtagtctaat cgtcgaaagg caacttgaat agtctaaaga ccaaataagg 7261 aaaaagcaag acattccata tgctcattgg tggcaactag ataaggaagg aatgacgcaa 7321 ggacagatgg gcgtagacga agctatgtac gattatataa gctgttgcca ccatcaaata 7381 aacgccattt gaccattcac cacattggtg tgcacctggg tagatggaca gaccgttgag 7441 tccctaacga ttgcgaacac ctgaatgaag cagaaggctt ca //