LOCUS JN624878 7670 bp DNA linear VRL 25-JUL-2016 DEFINITION Avian leukosis virus isolate JL093-1, complete genome. ACCESSION JN624878 VERSION JN624878.1 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7670) AUTHORS Pan,W., Gao,Y., Sun,F., Qin,L., Liu,Z., Yun,B., Wang,Y., Qi,X., Gao,H. and Wang,X. TITLE Novel sequences of subgroup J avian leukosis viruses associated with hemangioma in Chinese layer hens JOURNAL Virol. J. 8 (1), 552 (2011) PUBMED 22185463 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7670) AUTHORS Pan,W., Gao,Y., Sun,F., Yun,B., Liu,Z., Wang,Y., Qi,X., Gao,H. and Wang,X. TITLE Direct Submission JOURNAL Submitted (29-AUG-2011) Avian Infectious Diseases, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, 427 Maduan Street, Harbin, Heilongjiang 150001, China FEATURES Location/Qualifiers source 1..7670 /mol_type="genomic DNA" /country="China" /isolation_source="liver; spleen" /collection_date="2009" /host="layer chicken" /note="subgroup: J" /db_xref="taxon:11864" /isolate="JL093-1" /proviral /organism="Avian leukosis virus" repeat_region 1..344 /rpt_type=long_terminal_repeat CDS join(642..659,5340..7028) /codon_start=1 /protein_id="AEX00175.1" /translation="MEAVIKAFLTGHPGKASRKDSKKKPPATSKKDPEKTPLLPSRGY FFFQMILVCVVIISVVPGVGGVHLLQQPGNVWVTWANKTGQTDFCLSLQSATSPFRTC LIGIPQYPLSAFKGYVTNVTACQNDTDLASQTACLIQTLNTTLPWDPQELDILGSQMI KNGTNRTCVTFGSVCYKNNGSRVCHIFDGNFNGTGGAEAELRDFITKWKGDDHLIRPY VNQSWTMVSPINTESFSISSRYCGFTSNETRYYKGNLSDWCNSKGGEWSAGYSNGTQC SSNTTDCAGNCTAEWNYYAYGFTFGKQPEVLWNNGTAKALPPGIFLICGDRAWQGIPS NALGGPCYLGRLTMLSPNFTTWMTYGPNITGHHRSRRSVSHLSSDCSDEVQLWSATAR IFASFFAPGVAAAQALREIERLACWSVKQANLTSLVLNAMLEDMNSIRHAVLQNRAAI DFLLLAQGHGCQDVEGMCCFNLSDHSESIHKALQAMKEHTEKIRVEDDPIGDWFTRTF GSFGGWLAKGVKTLLFALLVIVCLLAIIPCIIKCFQDCLSRTMYQFMDERIRYHRIRE QL" /product="env protein" /note="env" CDS 642..2747 /codon_start=1 /protein_id="AEX00173.1" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLTSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPESIEKPATERRIDKGEEEGETTVQRDAKMAPEETATPKTVGTFCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEQEHAGQAPGPA LTDWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITGLADTVRTKGLRSPLTM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKIAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRKRDGNQGQRPGRGLSSG PWPGPDQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag protein" /note="gag" CDS <2765..5386 /codon_start=1 /protein_id="AEX00174.1" /translation="TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQL GHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWP LMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGKEVISTLERAGFTISPDKIQ REPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPF YEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGV LGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPAC FREDLPLPEGILLALRGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTD ASSSTHKGVVVWREGPRWKIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSAF VARMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQ ATFQAYPLREAKDLHTTLHIGPRALSKACNITMQQAREVVQTCPHCNSAPALEAGVNP RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIR VLAEGDGFMKRIPASKQGELLAKAMYALNHFERGENTKTPVQKHWRPTVLTEGPPVKI RIETGEWEKGWNVLVWGRGYAAVKNRDTDKIIWVPSRKVKPDITQKDEVTKKDEASPL FAGISDWAPWKGEQEGL" /product="pol protein" /note="pol" repeat_region 7348..7670 /rpt_type=long_terminal_repeat ORIGIN 1 tgtagtgtta tgcaatactc ttgtagtctt gcaacatgct tatgtaacga tgagttagca 61 acatgcctta taaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 tgagcgtggt atgatcgtgc cttattagga aggcaacaga cgggtctaac acggattgga 181 cgaaccactg aattccgcat tgcagagata ttgtatttaa gtgcctagct cgatacagta 241 aacgccattt gaccattcac cacattggtg tgcacctggg ttgatggccg gaccgttgat 301 tccctgacga ctacgagcac atgcatgaag cagaaggctt catttggtga ccccgacgtg 361 atcgttaggg aatagtggtc ggccacaggc ggcgtggcga tcctgtcctc atccgtctcg 421 cttattcggg gagcggacga tgaccctagt agagggggct gcggcttagg agggcagaag 481 ctgagtggcg tcggagggag ctctactgca gggagccaac ataccctacc gagaactcag 541 agagtcgctg gaagacggga aggaagcccg acgactgagc ggtccacccc aggcgtgatt 601 ccggttgctc tgcgtgattc cggtcgcccg gtggatcaag catggaagcc gtcataaagg 661 tgatttcgtc cgcgtgtaag acctattgcg ggaaaacctc tccttctaag aaggaaatag 721 gggctatgtt gtccctgtta caaaaggaag ggttgcttac gtctccctca gacttatatt 781 ccccggggtc ctgggatccc attaccgcgg cgctctccca gcgggctatg gtacttggaa 841 aatcgggaga gttaaaaacc tggggattgg ttttgggggc attgaaggcg gctcgagagg 901 aacaggttac atctgagcaa gcaaagtttt ggttgggatt agggggaggg agggtctctc 961 ccccaggtcc ggagagcatc gagaaaccag caacggagcg gcgaatcgac aagggggagg 1021 aagagggaga aacaactgtg cagcgagatg cgaagatggc gccggaggaa acggccacac 1081 ctaaaaccgt tggcacattc tgctatcatt gcggaacagc tattggctgt aattgcgcca 1141 cagcctcggc tcctcctcct ccttatgtgg ggagtggttt gtatccttcc ctggcggggg 1201 tgggagagca gcagggccag gggggtgaca cacctcgggg ggcggaacag ccaagggcgg 1261 agcaagagca cgcgggtcag gctcctgggc cagccctgac tgactgggca agggtcaggg 1321 aggagcttgc gagtacaggt ccgcccgtgg tggccatgcc tgtagtgatt aagacagagg 1381 gacccgcctg gacccctctg gagccaaaat tgatcacagg actggctgat acggtcagga 1441 ccaagggctt acgatccccg ctcactatgg cagaagtgga agcgcttatg tcctccccgc 1501 tgctgccgca tgacgttacg aatctaatga gagttatttt aggacctgcc ccatatgcct 1561 tgtggatgga cgcttggggt gtccaactac agacggttat agcggcagcc actcgcgacc 1621 cccgacaccc agcgaatggt caagggcggg gggaacggac taacttggat cgcttaaagg 1681 gtttagctga tgggatggtg ggcaacccac agggtcaggc tgcattatta agaccagggg 1741 aattggttgc tattacggcg tcggctctcc aggcgtttag agaagttgcc cggctggcgg 1801 aacctgcagg tccatgggcg gatattacac agggaccatc tgagtccttt gttgattttg 1861 ccaatcggct tataaaggcg gtcgaggggt cggatctccc gccttccgca cgggctccgg 1921 tgatcattga ctgctttagg cagaagtcac agccagatat tcagcagctt atacgggcag 1981 caccctccac gctgaccacc ccaggagaga taatcaaata tgtgctagac aggcagaaga 2041 ttgcccctct cacggatcag ggcatagctg cggccatgtc gtctgctatt cagcccttag 2101 ttatggcagt agtcaataga gagagggacg gacaaactgg gtcgggtggt cgtgcccgag 2161 ggctctgcta cacttgcgga tccccgggac attatcaggc gcagtgcccg aaaaaacgaa 2221 agtcaggaaa cagccgtgag cgatgtcagt tgtgtgacgg gatgggacac aacgctaaac 2281 agtgtaggaa gcgggatggc aaccagggcc aacgcccagg aagaggtctc tcttcgggac 2341 cgtggcccgg ccctgaccag cctgccgtct cgttagcgat gacaatggaa cataaagatc 2401 gccccttggt tagggtcatt ctgactaaca ctgggagtca tccggtcaaa cagcgttcgg 2461 tgtatattac cgcgctgttg gactctggag cggacatcac tattatttca gaggaggact 2521 ggcccaccga ttggccagtg atggaggccg cgaacccgca gatccatggg ataggagggg 2581 gaattcccat gcgaaaatcc cgggatatga tagaggtggg ggttattaac cgagacgggt 2641 ctttggagcg acccctgctc ctcttccccg cagtcgctat ggttagaggg agtatcctag 2701 gaagagattg tctgcagggc ctagggctcc gcttgacaaa tttataggga gggccactgt 2761 tcttactgtt gcgctacatc tggctattcc gctcaaatgg aagccagacc acacgcctgt 2821 gtggattgac cagtggcccc ttcctgaggg taaacttgta gcgctaacgc aattagtgga 2881 aaaagaatta cagttaggac atatagaacc ttcacttagt tgttggaaca cacctgtctt 2941 tgtgatccgg aaggcttctg ggtcttatcg tttattgcat gacttgcgcg ctgttaacgc 3001 caagcttgtt ccttttgggg ccgtccaaca gggggcgcca gttctctccg cgctcccgcg 3061 tggctggccc ctgatggtcc tagacctcaa ggattgcttc ttttctatcc ctcttgcgga 3121 acaagatcgc gaagcttttg catttacgct cccctctgtg aataaccagg cccccgctcg 3181 aagattccaa tggaaggtct tgccccaagg gatgacctgt tctcccacta tctgtcagtt 3241 ggtagtgggt caggtgctcg agcccttgcg actcaagcac ccatctctgc gcatgttgca 3301 ttatatggac gatcttttgc tagccgcctc aagtcatgat gggttggaag cggcagggaa 3361 ggaggttatc agtacattgg aaagagccgg gttcactatt tcgccggata agatccagag 3421 ggagcccgga gtacaatatc ttgggtacaa gttaggcagt acgtatgtag cacccgtggg 3481 cttggtagca gaacccagga tagccacctt gtgggatgtt caaaagctgg tggggtcact 3541 tcagtggctt cgcccagcgt taggaatccc gccacgactg atgggtccct tttatgagca 3601 gttacgaggg tcagatccta acgaggcgag ggaatggaat ctagacatga aaatggcctg 3661 gagagagatc gtacagctta gcactactgc tgccttggaa cgatgggacc ctgccctgcc 3721 tctggaagga gcggtcgcta gatgtgaaca gggggcaata ggggtcctgg gacagggact 3781 gtccacacac ccaaggccat gtttgtggtt attctccacc caacccacca aggcgtttac 3841 tgcttggtta gaagtgctca cccttttgat tactaagcta cgcgcttcgg cagtgcgaac 3901 ctttggcaag gaggttgata tcctcctgtt gcctgcatgc ttccgggagg accttccgct 3961 cccggagggg atcctgttag cccttagggg gtttgcagga aaaatcagga gtagtgacac 4021 gccatctatt tttgacattg cgcgtccact gcatgtttct ctgaaagtga gggttaccga 4081 ccaccctgta ccgggaccca ctgtctttac cgacgcctcc tcaagcaccc ataagggggt 4141 ggtagtctgg agggagggcc caaggtggaa gataaaagaa atagctgatt tgggggcaag 4201 tgtacaacag ctggaagcac gcgctgtggc catggcactt ctgctgtggc cgacaacgcc 4261 cactaatgta gtgactgact ctgcgtttgt tgcgagaatg ttactcaaga tgggacagga 4321 gggagtcccg tctacagcgg cagcttttat tttagaggat gcgttaagcc aaaggtcagc 4381 tatggccgcc gttctccacg tgcggagtca ttctgaagtg ccagggtttt tcacagaagg 4441 aaatgacgtg gcagatagcc aagccacctt tcaagcgtat cccttgagag aggctaaaga 4501 tcttcatact actctccata ttgggccccg cgcgctatcc aaagcatgta atataactat 4561 gcagcaggct agggaggttg ttcagacctg cccgcattgt aattcagccc ctgcgttgga 4621 ggccggggta aaccctaggg gtttgggacc cctacagata tggcagacag actttacgct 4681 tgagcctaga atggctcccc gttcctggct cgctgttact gtggacaccg cctcatcagc 4741 gatagtcgta actcagcatg gccgtgtcac atcggttgct gcacaacatc attgggccac 4801 ggctatcgcc gttttgggaa gaccaaaggc cataaaaaca gataacgggt cctgcttcac 4861 gtctaaatcc acgcgggagt ggctcgcgag atgggggata gcacacacca ccgggattcc 4921 gggaaattcc cagggtcaag ctatggtaga gcgggccaac cggctcctga aagataagat 4981 ccgtgtgctt gcggaagggg acggctttat gaaaagaatc cccgccagca aacaggggga 5041 actgctagcc aaggcaatgt atgccctcaa tcactttgag cgtggtgaaa acacgaaaac 5101 accggtacaa aaacactgga gacctaccgt tcttacagaa ggacccccgg ttaaaatacg 5161 aatagagaca ggggagtggg aaaaagggtg gaacgtgctg gtctggggac gaggttatgc 5221 cgctgtgaaa aacagggaca ctgataagat tatttgggta ccctctcgaa aagttaaacc 5281 ggacatcacc caaaaggatg aggtgactaa gaaagatgag gcgagccctc tctttgcagg 5341 catttctgac tgggcaccct ggaaaggcga gcaggaagga ctctaagaag aagccgccag 5401 caacaagcaa gaaagacccg gagaagacac ccttgctgcc gtcgagaggt tatttcttct 5461 ttcaaatgat acttgtgtgc gtggttatta tttctgttgt cccaggggtg gggggagttc 5521 atctgttgca acaaccagga aacgtgtggg tcacctgggc aaataagacg ggccaaacag 5581 atttttgcct tagtctacag tcagcgacct cgccattccg cacctgcttg ataggcattc 5641 cacagtatcc tctgagcgcc tttaagggat atgtcactaa tgttactgct tgccaaaacg 5701 ataccgattt agccagccaa acagcatgct tgatacagac tctaaatacg accctccctt 5761 gggaccccca agaattggat attttagggt cccagatgat caagaacgga acaaaccgta 5821 cgtgcgttac ctttggttcg gtgtgctata agaacaatgg cagtagagtc tgccacattt 5881 ttgatgggaa ttttaatggg actggtgggg cggaagcaga attgcgtgac ttcataacaa 5941 aatggaaagg tgatgaccat cttataaggc cctatgtcaa ccaatcatgg acgatggtaa 6001 gtccaataaa cacagagagt ttttcaataa gtagtagata ttgtggattc accagcaacg 6061 agactcgtta ttataaaggg aacctttctg attggtgtaa ttcaaaaggg ggagaatggt 6121 cagcggggta cagcaacggg acacaatgtt ccagcaacac gacggattgc gctggtaatt 6181 gcacagcgga atggaattat tatgcatatg ggtttacctt cgggaaacag ccagaggtgt 6241 tgtggaataa tgggactgct aaggcactcc ccccaggtat tttcttgatt tgtggggaca 6301 gggcttggca aggcatcccg agtaacgcct tgggagggcc ctgttatcta ggacgattga 6361 ctatgctctc tcctaacttt accacctgga tgacgtatgg gccgaacatt acgggtcacc 6421 accgtagcag gcgctcggtg agtcatctct cgtctgactg cagtgacgag gtacagctat 6481 ggagtgcgac agcccggata tttgcctctt tctttgctcc tggtgtagct gcagcacagg 6541 ccttaaggga gattgaacgc ttggcatgtt ggtcggttaa gcaagcaaat ttaacatcat 6601 tagtattgaa tgcgatgctg gaggacatga acagcatccg gcacgcggtg ttgcagaatc 6661 gagcagccat cgatttctta ctcctggcgc agggacacgg gtgtcaagac gtagaaggga 6721 tgtgttgctt caatctcagc gatcacagtg agtccattca caaggcgctc caagccatga 6781 aggaacatac agagaagata cgggtggaag acgatcccat aggggattgg tttacgcgca 6841 cgtttggtag ttttggaggg tggctcgcga aaggtgttaa gacgctactg tttgcattgc 6901 ttgtcatagt ctgtctatta gctatcattc catgtataat caagtgcttc caggattgtc 6961 tatcgagaac aatgtatcag ttcatggatg aacgcataag atatcataga attagggagc 7021 aactgtaggt tccgaacgcg atgtgacggg aggctgcgag ggatattcgg aggaatagga 7081 gaatgcgaat cgggctgtaa cggggcaagg cttgactgag gggactgtag catgtatagg 7141 cgctgagcgg ggcttcggtt gtacgcggat aggaatcccc tcaggacaat tctgcttgaa 7201 atgtgatgac accttcctgt tttgccctta gactattcaa gttgcctctg tggattagga 7261 ctggagacag ctcggatggt ctgatggcca aatagagcaa gctagatagg tagctgcgaa 7321 atacgctttt gcatagggag ggggaaatgt agtcttatgc aatactctta tgtaacgatg 7381 aaacagcaat atgccttata aggagaaaga aggcactgta cccgttgatt ggtggaagta 7441 aggtggtacg gtcatggtat gatcgtgcct tattaggaag gcaacagacg ggtcagacat 7501 ggattggacg atctccttag ttccgcgttg caaagaaatt gtatttaagt gcctagcttg 7561 atacaataaa cgccatttta ccattcacca cattggtgtg cacctgggtt gatggccgga 7621 ccgtcgattc cctgacgatt acgaacacct gcatgaagcg gatggcttca //