LOCUS KU375453 7746 bp DNA linear VRL 14-MAR-2016 DEFINITION Avian leukosis virus isolate SDAU14A1, complete genome. ACCESSION KU375453 VERSION KU375453.1 KEYWORDS Avian leukosis virus; Subgroup A; Chinese local breeds. SOURCE Avian leukosis virus (ALV-A) ORGANISM Avian leukosis virus Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7746) AUTHORS Wang,Y., Xu,S., Luan,B., Li,Y., Zhao,P., Chang,S. and Cui,Z. TITLE Identification, sequence analysis and pathogenicity research of Avian leukosis virus subgroup A isolated from Chinese local breed chickens JOURNAL Unpublished REFERENCE 2 (bases 1 to 7746) AUTHORS Wang,Y., Xu,S., Luan,B., Li,Y., Zhao,P., Chang,S. and Cui,Z. TITLE Direct Submission JOURNAL Submitted (03-JAN-2016) College of Animal Science and Veterinary Medicine, Shandong Agricultural University, Daizong Street 61, Tai'an City, Shandong Province 271018, China FEATURES Location/Qualifiers source 1..7746 /mol_type="genomic DNA" /country="China" /collection_date="01-Aug-2014" /host="Gallus gallus (chicken)" /note="subgroup: A; acronym: ALV-A" /db_xref="taxon:11864" /isolate="SDAU14A1" /proviral /organism="Avian leukosis virus" repeat_region 1..330 /rpt_type=long_terminal_repeat /note="5' LTR" gene 607..7122 /gene="env" CDS join(607..624,5281..7122) /codon_start=1 /protein_id="AMP18913.1" /gene="env" /translation="MEAVIKMKRALFLQAFLTGHPGKVSKKDSKKKPPATSKKDPEKT PLLPTRVNYILIIGVLVLCEVTGVRADVHLLEQPGNLWITWANRTGQTDFCLSTQSAT SPFQTCLIGIPSPISEGDFKGYVSDTNCTTLGTDRLVSSASITGGPDNSTALTYRKVS CLLSKLNVSMWDEPPELQLLGSQSLPNITNITQISGVTGGCVGFRPGGIPWYIGWTRQ EATRFLLKQSSFSNSTKPFTVVTADRHNLFTGSEYCGAYGYRFWEVYNCSQEQGQDQQ QYRCGKARSPRPGSPETQCIRRGGKWVNQSREINETEPFSFTVNCTASNLRNASGCCG KTGTILPGVWIDSTKGNFTKPKALPPAIFLICGDRAWQGVPSRPVGGPCYLGKLTMLA PNHTDILKILANSSQTGMRRKRSVSHLDDTCSDEVQLWGPTARIFASILAPGVAAAQA LREIERLACWSVKQANLTTSLLGDLLDDVTSIRHAVLQNRAAIDFLLLAHGHGCEDVA GMCCFNLSDHSESIQKKFQLMKEHVNKIGVDNDPIGSWLRGIFGGIREWAVHLLKGLL LGLVVILLLVVCLPCLLQFVPSSIRKMINNSISYHTEYKKLQKACRQPENGAV" /product="env protein" gene 607..2712 /gene="gag" CDS 607..2712 /codon_start=1 /protein_id="AMP18915.1" /gene="gag" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLTSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGKEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQKQGDDAPRGAEQPRAEPGHAGQAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIVAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRKRDGNQGQRPGRGLSSG PWSGPDQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" /product="gag protein" gene <2727..5417 /gene="pol" CDS <2727..5417 /codon_start=1 /protein_id="AMP18914.1" /gene="pol" /translation="LTVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQ LGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGW PLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRSQWKVLPQGMTCSPTICQL VVGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKI QREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGP FYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIG VLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPA CFREDLPLPEGILLALRGFAGKIRSSDTPSIFDIARPLHVFLKVRVTDHPVPGPTVFT DASSSTHKGVVVWGEGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSA FVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADS QATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVN PRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAI AVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI RVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVK IRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKAEVTKKDEASP LFAGISDWAPWEGEQEGLQEEAASNKQERSGEDTLAANES" /product="pol protein" repeat_region 7420..>7746 /rpt_type=long_terminal_repeat /note="3' LTR" ORIGIN 1 aatgtagtct tacacaatag ccttacgcaa tagtgttatg taacgatgaa gtagctatat 61 accatataag gagaagaaag gcaccacaca tgtcgattgg tggacgtaag atggtatgat 121 cgtgccttat taggaatata acagacgggt ctcaccggga ttggatagac cacttagttc 181 cgcatagtag agatattgta tttaagtgcc tggctagata caataaacgc cattttacca 241 ctcaccacat tggtgtgcac ctgggtagat ggacagaccg ttgagtccct aacgattgcg 301 aacacctgaa tgaagcagaa ggcttcattt ggtgaccccg acgtgatcgt tagggaatag 361 tggtcggcca caggcggcgt ggcgatcctg ccctcatccg tctcgcttaa cggagcgagg 421 acgatgaccc tagtagaggg ggctgcggct taggagggca gaagctgagt gacgtcggag 481 ggagctccac ggccgggggc caagataacc taccgagaac tcagagagtc gttggaagac 541 gggaaggaag cccgacgact gagcagtcca ccccaggcgt gattccggtc gcccggtgga 601 tcaagcatgg aagccgtcat aaaggtgatt tcgtccgcgt gtaaaactta ttgcgggaaa 661 acctctcctt ctaagaagga gataggggcc atgttgtccc tgttacagaa ggaagggctg 721 cttacgtccc cctctgactt gtactccccg gggtcctggg atcccatcac tgcggcgctc 781 tcccagcggg caatggtact tggaaaatcg ggagagttaa aaacctgggg attggttttg 841 ggggcattga aggcggctcg ggaggaacag gttacatctg agcaggcaaa gttttggttg 901 ggactagggg gagggagggt ctctcccccg ggtccggagt gcatcgagaa accagcaacg 961 gagcggcgaa tcgacaaagg gaaggaagtg ggagaaacaa ctgtgcagcg agatgcgaag 1021 atggcgccag aggaaacggc cacacctaaa accgttggca catcctgcta tcattgcgga 1081 acagctattg gctgtaattg cgccacagcc tcggcccctc ctcctcctta tgtggggagt 1141 ggtttgtatc cttccctggc gggggtgggg gagcagcaga aacaggggga tgacgcacct 1201 cggggggcgg aacagccaag ggcggagcca ggacacgcgg gtcaggcccc tgggccggcc 1261 ctgactgact gggcaaggat cagggaggag cttgcgagta caggtccgcc cgtggtggcc 1321 atgcctgtag tgattaagac agagggaccc gcctggaccc ctctggagcc aaaattgatc 1381 acaagactgg ctgatacggt caggaccaag ggcttacgat ccccgattac tatggcagaa 1441 gtggaagcgc ttatgtcctc cccgctgctg ccgcatgacg tcacgaattt aatgagagtt 1501 attttaggac ctgccccata tgccttatgg atggacgctt ggggagtcca actccagacg 1561 gttatagtgg cagccactcg cgacccccga cacccagcga acggtcaggg gcggggggaa 1621 cggactaatt tggatcgctt aaagggctta gctgatggga tggtgggtaa cccacagggt 1681 caggccgcat tattgagacc gggggaattg gttgctatta cggcgtcggc tctccaggcg 1741 tttagagagg ttgcccggct ggcggaacct gcaggtccat gggcggacat cacacaggga 1801 ccatctgagt cctttgttga ttttgccaat cgtcttataa aggcggttga agggtcagat 1861 ctcccacctt ccgcgcgggc tccggtgatc attgactgct ttaggcagaa gtcacagcct 1921 gatattcagc agcttatacg ggcagcaccc tccacactga ccacccccgg agaaataatc 1981 aaatatgtgc tagacaggca gaagactgcc cctcttacgg atcaaggcat agccgcggcc 2041 atgtcgtctg ctatccagcc cttagttatg gcagtagtca atagagagag ggatggtcaa 2101 actgggtcgg gtggtcgtgc ccgagggctc tgctacactt gcggatcccc gggacattat 2161 caggcgcagt gcccgaaaaa acgaaaatca ggaaacagcc gtgagcgatg tcagttgtgt 2221 gacgggatgg gacacaacgc taaacagtgt aggaagcggg atggcaacca gggccaacgc 2281 ccaggaagag gtctctcctc ggggccgtgg tccggccctg accagcctgc cgtctcgtta 2341 gcgatgacaa tggaacataa agatcgcccc ttggttaggg tcattctgac taatactggg 2401 agtcatccag tcaaacaacg ttcggtgtat atcaccgcgc tgttggactc cggagcggac 2461 atcactatca tttcggagga ggattggcct actgattggc cggtggtgga caccgcgaac 2521 ccacagatcc atggcatagg agggggaatc cccatgcgaa aatctcgtga catgatagag 2581 ttgggggtta ttaaccgaga cggatctttg gagcgacccc tgctcctctt ccccgcagta 2641 gctatggtta gagggagtat cctaggaaga gattgtctgc agggcctagg gctccgcttg 2701 acaaatttat agggagggcc actgttctta ctgttgcgct acatctggct attccgctca 2761 aatggaagcc agaccacacg cctgtgtgga tcgaccagtg gccccttcct gagggtaaac 2821 ttgtagcgct aacgcaatta gtggaaaaag aattacagtt aggacatata gaaccttcac 2881 ttagttgttg gaacacacct gtctttgtga tccggaaggc ttccgggtct tatcgcttat 2941 tgcatgactt gcgcgctgtt aacgccaagc ttgttccttt tggggccgtc caacaggggg 3001 cgccagttct ctccgcgctc ccgcgtggct ggcccctgat ggtcctagac ctcaaggatt 3061 gcttcttttc tattcctctt gcggaacaag atcgcgaagc ttttgcattt acgctcccct 3121 ctgtgaataa ccaggccccc gctcgaagat cccaatggaa ggtcttgccc caagggatga 3181 cctgttctcc cactatctgt cagttggtag tgggtcaggt acttgagccc ttgcgactca 3241 agcacccatc tctgtgcatg ttgcattata tggatgatct tttgctagcc gcctcaagtc 3301 atgatgggtt ggaagcggca ggggaggagg ttatcagtac attggaaaga gccgggttca 3361 ccatttcgcc tgataagatc cagagggagc ccggagtaca atatcttggg tacaagttag 3421 gcagtacgta tgtagcaccc gtaggcctgg tagcagaacc caggatagcc accttgtggg 3481 atgttcaaaa gctggtgggg tcacttcagt ggcttcgccc agcgttagga atcccaccac 3541 gactgatggg ccccttttat gagcagttac gagggtcaga tcctaacgag gcgagggaat 3601 ggaatctaga catgaaaatg gcctggagag agatcgtaca gcttagcacc actgctgcct 3661 tggaacgatg ggaccctgcc ctgcctctgg aaggagcggt cgctagatgt gaacaggggg 3721 caataggggt cctgggacag ggactgtcca cacacccaag gccatgcttg tggttattct 3781 ccacccaacc caccaaggcg tttactgctt ggttagaagt gctcaccctt ttgattacta 3841 agctacgcgc ttcggcagtg cgaacctttg gcaaggaggt tgatatcctc ctgttgcctg 3901 catgctttcg ggaggacctt ccgctcccgg aggggatcct gttagccctt agggggtttg 3961 caggaaaaat caggagtagt gacacgccat ctatttttga cattgcgcgt ccactgcatg 4021 tttttctgaa agtgagggtt accgaccacc ctgtaccggg acccactgtc tttaccgacg 4081 cctcctcaag cacccataag ggggtggtag tctgggggga gggcccaagg tgggagataa 4141 aagaaatagc tgatttgggg gcaagtgtac aacaactgga agcacgcgct gtggccatgg 4201 cacttctgct gtggccgaca acgcccacta atgtagtgac tgactccgcg tttgtcgcga 4261 aaatgttact caagatggga caggagggag tcccgtctac agcggcggct tttattttag 4321 aggatgcgtt aagccaaagg tcagccatgg ccgccgttct ccacgtgcgg agtcattctg 4381 aagtgccagg gtttttcaca gaaggaaatg acgtggcaga tagccaagcc acctttcaag 4441 cgtatccctt gagagaggct aaagatctcc atactgctct ccatattgga ccccgcgcgc 4501 tatccaaagc gtgtaatata tctatgcagc aggctaggga ggttgttcag acctgcccgc 4561 attgtaattc agcccctgcg ttggaggccg gggtaaaccc taggggtttg ggacccctac 4621 agatatggca gacagacttt acgcttgagc ctagaatggc cccccgttcc tggctcgctg 4681 ttactgtgga taccgcctca tcggcgatag tcgtaactca gcatggccgt gtcacatcgg 4741 ttgctgcaca acatcattgg gccacggcta tcgccgtttt gggaagacca aaggccataa 4801 aaacagataa cgggtcctgc ttcacgtcta aatccacgcg agagtggctc gcgagatggg 4861 ggatagcaca caccaccggg attccgggta attcccaggg tcaagctatg gtagagcgag 4921 ccaaccggct cctgaaagat aagatccgtg tgcttgcgga gggggacggc tttatgaaaa 4981 gaatccccac cagcaaacag ggggaactac tagccaaagc aatgtatgcc ctcaatcact 5041 ttgagcgtgg tgaaaacaca aaaacaccga tacaaaaaca ctggagacct accgttctta 5101 cagaaggacc cccggttaaa atacgaatag agacagggga gtgggaaaaa ggatggaacg 5161 tgctggtctg gggacgaggt tatgccgctg tgaaaaacag ggacactgat aaggttattt 5221 gggtaccctc tcgaaaagtt aaaccggaca tcacccaaaa ggctgaggtg actaagaaag 5281 atgaagcgag ccctcttttt gcaggcattt ctgactgggc accctgggaa ggtgagcaag 5341 aaggactcca agaagaagcc gccagcaaca agcaagaaag atccggagaa gacacccttg 5401 ctgccaacga gagttaatta tattctcatt attggtgtcc tggtcttgtg tgaggttacg 5461 ggggtaagag ctgatgtcca cttactcgag cagccaggga acctttggat tacatgggcc 5521 aaccgtacag gccaaacgga tttctgcctc tctacacagt cagccacctc cccttttcaa 5581 acatgtttga taggtatccc gtcccctatt tccgaaggtg attttaaggg atatgtctct 5641 gatacaaatt gcaccacctt gggaactgac cggttagtct cgtcagccag cattactggc 5701 ggccctgaca acagcaccgc cctcacttac cgaaaggttt catgcttgct gtcaaagctg 5761 aatgtctcta tgtgggatga gccaccggaa ctacagctgc taggttccca gtctctccct 5821 aacattacta atattactca aatttctggt gtaaccggag gatgcgtagg ctttagacca 5881 ggagggatcc cctggtatat aggatggact agacaggaag ccacacggtt cctccttaaa 5941 caatcctcct tttctaattc cacgaaacca tttacggtgg tgacagcgga tagacacaat 6001 ttgtttacgg ggagtgagta ctgtggtgca tatggctaca gattttggga agtgtataac 6061 tgctcacaag aacagggtca ggaccaacag caataccgct gtggcaaggc acgcagcccc 6121 cgcccgggtt ctcctgaaac ccagtgcata aggagaggag gtaaatgggt taaccaatca 6181 cgggagatta atgaaacgga gccgttcagc tttacggtga actgtacagc tagtaatttg 6241 cgtaatgcca gtgggtgctg cggaaaaaca ggtacgatcc ttccaggggt atggatcgat 6301 agcacaaaag gtaatttcac caaaccaaaa gcgctaccac ccgcaatttt cctcatttgt 6361 ggggatcgcg catggcaagg agttcccagt cgtccggtag ggggcccctg ctatttaggc 6421 aagcttacca tgttagcgcc caaccataca gatattctca aaattcttgc taattcatcg 6481 cagacaggta tgagacgtaa acgaagcgtc tcacacctgg atgatacgtg ctcagatgaa 6541 gtacaacttt ggggtcctac agcaagaatc tttgcatcta tcttagcccc gggggtagca 6601 gctgcacaag ccttaagaga aatcgaaaga ctagcctgtt ggtccgttaa acaggctaac 6661 ttgacaacat cactcctcgg ggacttattg gatgatgtca cgagtattcg acacgcggtc 6721 ctacagaacc gagcggctat tgacttcttg cttctggctc acggccatgg ctgtgaggac 6781 gttgccggaa tgtgttgttt caatctgagt gatcacagtg aatctataca gaagaagttc 6841 cagctaatga aggagcatgt caataagatc ggcgtggaca acgacccaat cggaagttgg 6901 ctgcgaggga tattcggagg aataagagaa tgggccgttc atttgctgaa aggactgctt 6961 ttggggcttg tagttatctt gttgctagta gtatgcctgc cttgcctttt gcaatttgtg 7021 cccagtagca tccgaaagat gattaataat tcaatcagct atcacacgga atacaagaag 7081 ttacaaaagg cttgcaggca gcccgagaat ggggcagtgt aaaatagtac atgggaaagg 7141 gtatgaaact tgcgaatcgg gctgtaacgg ggcaaggctt gactgagggg attgcagcat 7201 gtataggcgc tgggcggggc ttcggttgta cgcggatagg aatcccctca ggacaattct 7261 gcttggaata tgatggcacc ttccctgttt tgcccttaga ctattcaagt tgcctctgtg 7321 gattagggct ggaggcagct cggatggtct gatggccaaa tagagcaagc tagacaggta 7381 cttgtaactg cgaaatacgc ttttgcatag ggagggggaa atgtagtctt acacaatagc 7441 cttacgcaat agtgttatgt aacgatgaag tagctatata ccatataagg agaagaaagg 7501 caccacacat gtcgattggt ggacgtaaga tggtatgatc gtgccttatt aggaatataa 7561 cagacgggtc tcaccgggat tggatagacc acttagttcc gcatagtaga gatattgtat 7621 ttaagtgcct ggctagatac aataaacgcc attttaccac tcaccacatt ggtgtgcacc 7681 tgggtagatg gacagaccgt tgagtcccta acgattgcga acacctgaat gaagcagaag 7741 gcttca //