LOCUS KR997899 3958 bp RNA linear VRL 24-NOV-2015 DEFINITION Avian orthoreovirus strain 19831M09 segment L1 lambda A gene, complete cds. ACCESSION KR997899 VERSION KR997899.1 KEYWORDS . SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3958) AUTHORS Dandar,E., Feher,E., Balint,A., Kisfali,P., Melegh,B., Mato,T., Kecskemeti,S., Palya,V., Banyai,K. and Farkas,S.L. TITLE Genome Sequences of Three Turkey Orthoreovirus Strains Isolated in Hungary JOURNAL Genome Announc 3 (6), e01333-15 (2015) PUBMED 26586882 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3958) AUTHORS Feher,E., Dandar,E. and Banyai,K. TITLE Direct Submission JOURNAL Submitted (29-MAY-2015) Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungaria krt 21., Budapest, Pest H-1143, Hungary COMMENT GenBank Accession Numbers KR997899-KR997908 represent sequences from the 10 segments of Avian orthoreovirus 19831M09. ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 7,0 Sequencing Technology :: IonTorrent; Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3958 /mol_type="genomic RNA" /country="Hungary" /isolation_source="feces" /segment="L1" /collection_date="2009" /host="turkey" /db_xref="taxon:38170" /strain="19831M09" /organism="Avian orthoreovirus" CDS 21..3902 /codon_start=1 /protein_id="ALG03386.1" /translation="MSSRKVARRRHKDAAESKNTKTTDKLKSSSSDVEKSAKDVTDKK VTAPKSDNPAASTPSSTDGASQTSVAKQTNDNDASVKESSPKPTVSSDGKDGMHGAVR SQDAKATVAVDNNEDKDVVFGGTGSGDKNAITKTGSVDNDGGVKTVPAKDATISSAKA MMEQKQLVAGLPKQPKLNSHLCTVCMAQFASADALTIHQTTHSIGSNAALTSFSISTA VEEFIQSWAAATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIIPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETADALTLSVREMWMSRISQMNISPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPVDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNWLRQINLAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPAAFNPLSPPPSVVFNRGDAEVHEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFSLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRSIPIERYRALVDPGALPATNQLPHTVD LYCSLRRYYLETPPITATVTTYGDGLPALNH" /product="lambda A" /note="core shell" misc_feature 348..3863 /db_xref="CDD:212564" /note="inner capsid protein lambda-1 or VP3; Region: lambda-1; cd11674" misc_feature order(564..566,573..575,612..614,624..626) /db_xref="CDD:212564" /note="Zn binding site [ion binding]; other site" misc_feature order(537..548,561..563,576..578,693..698,1503..1508, 1512..1514,1518..1520,1701..1703,1713..1715,1722..1727, 2286..2297,2304..2309,2355..2357,2367..2375,2382..2384, 2400..2402,2406..2414,2418..2420,2430..2432,2439..2444, 2448..2450,2454..2456,2721..2726,2730..2732,2739..2741) /db_xref="CDD:212564" /note="homooligomer interface [polypeptide binding]; other site" misc_feature order(1344..1361,1377..1379,1383..1385,1425..1427, 1434..1439,1446..1451,1455..1457,1461..1463,1467..1472, 1476..1481,1518..1541,1560..1562,2208..2210,3099..3101, 3105..3107,3114..3116,3774..3782,3822..3824,3828..3830) /db_xref="CDD:212564" /note="VP6 interface [polypeptide binding]; other site" ORIGIN 1 gcttttctcc gaacgccgaa atgagttcgc gcaaagtggc tagacgtcgt cataaggatg 61 ctgctgaatc caagaacaca aagactactg ataaactcaa gtcatcctct agtgacgttg 121 aaaagtccgc aaaagatgtc acggacaaga aggtcactgc tccaaaatct gacaatccag 181 ctgcgtctac cccatcctca actgatggcg cttcgcagac gtccgtcgcc aaacagacga 241 atgataatga tgcttcagtc aaagaatcat ctcccaaacc tactgtgtcc agtgatggga 301 aggacggaat gcacggcgct gtacgctcac aagatgctaa ggctaccgtt gcggttgata 361 ataatgagga taaagacgta gtgtttggtg gtacgggttc cggtgacaag aacgccatta 421 cgaagactgg gtcagttgac aatgatgggg gcgttaaaac tgtgccagct aaggacgcta 481 ccatatcttc ggccaaagct atgatggagc agaagcagct agtcgctggt cttccaaagc 541 aaccaaagtt gaatagccat ctgtgcactg tttgtatggc tcagtttgct tccgctgatg 601 ctcttactat tcaccaaact acgcattcta ttggttccaa cgccgcttta acgagctttt 661 cgatttctac tgccgtcgag gaattcattc aatcctgggc tgctgctacg tctaccgcta 721 acactaagac ggccctaact gtgtctgacg ttgattcgtt gatgatgacc gagggcatac 781 gtttgataac ttgggattca gggttatgca cctcttttga gctagtccca attgttcact 841 caaacactgt ccaagatgtc atctcgtact catggttcac gtcgagttac aacatcacaa 901 ctcctttccc acaggcgact gttgtacgaa tcgtcttacg cactaactgg gctgctaagt 961 tagactcccc ttcctcgtca cgtgaatgtg atcttcgtct cgccccgcct acggagagca 1021 atgctcggtc gttctcaatg ctacttaata cgggcgcgac cccagaaggt actttcaatc 1081 ctaacaccct tcgtatgaat gtgctacaga tgtgtcttca gtatgtccta gccaatctgc 1141 atttgaatcg tagtactcaa tttaccatgg acctgaccgc ggcggctccc aacctttctg 1201 cttcccaact tcgcatcatt cctgaggata aggagggtaa atggtttcct gtcatgtatc 1261 cctctagagt gaacatccct ctattcaata agacggctga ttttgtcaac cagtgcattc 1321 gtgataggat tggtcggtac gaccgcgctc agacttttgc cggtgcgccc tctgaatggg 1381 ctgacatgtg ggaaacagca gatgctctga ctctctccgt tcgtgagatg tggatgtcac 1441 gtatttctca gatgaatatt tctcctgctg atattgctga cgctatctcc agatgttctc 1501 aatctttgct gaccgtcgct gctcctacag ctccctctgt agctcgcttg ttaccatggc 1561 gcgttagttc cgacgagaga cagctccttc agctgttgat gtacttgaac gttggtacta 1621 gtgctgacta cgtccaaccc attttgtccg cgttcgctcg gaccttatct cgtgtgtctc 1681 cgctacgcat taatcccacc ctgattgcta atgctatgtc aacgattgtg gagagcacca 1741 ccaatactca gagccctgcg gccgctattt tgtcgaaact caaacctgtt gcctctgact 1801 tctctgactt ccggctggcg tgtgctgctt ggctatataa tggttgtgtc caaacatatc 1861 tctctgaaga ttcgtatccg agcagtggtg gttccgtcac cagcatcgat acattagttg 1921 atatgtttgt gtgcttgctg gccttgcctc tagttactga tcctaatgcg ccatgtcaag 1981 cttttatggt cgtcgccaac gctatggtcg gctatgagaa tctacctatg gacgatccta 2041 actttactca gcagagactg gccgcagcgt ttaacaatcc caccacctgg cctcagtgtt 2101 tccttcaccc ccaaaacatc gaccgacgcc agtgtccgat tctctcatgg tgggctcagc 2161 agatacaccg taattggcct acaccgtctc aaattacgta cggtgcacct gacattattg 2221 gatcagctaa tctgttcact ccccctgacg tattgctgct tcctctccag cataggccca 2281 tacgtatcac caatccaacc ctgaacttcg ataatgaatt gacgacttgg cgtaatactg 2341 tggttgatct ggtcctacgc attatcgata gtggtcggta ccagcctaat tggaatcagt 2401 cgattcgtgc gtccatgcgt aacgctatga cgaattttag gatcatcaag tcctacactc 2461 ccgcttacat agcagaactg ctgcctgtgg aattagcggc tattgctcca actttacctt 2521 tccaaccttt ccaggtgccg ttcgctcgct tggaccgcga cgctattgtc actcacgtca 2581 acgtgtcaag acaagctccc aacaatcttg ctcaaccagc actgaacatg tctatgacgt 2641 atcagcgcac gggcgtcccg atctcgctta gcgctcgtcc cttggctgtc gctcttttgt 2701 caggtcagta ccccgttgat cctccccttc agaccaacgt ttggtacgtg aatactctta 2761 cacctctgta ttctaatgat ggtcttttca acaacgtgca gcatgctatg gttgcctctg 2821 aagcctatgc tactttgatc actatgttgg cacagtgcac tgacatgcaa taccctgtgg 2881 atcgtccatt gaactggctt cgccaaatta acctggctgc caatgaagcg acaatattcg 2941 gacgttctat taactcactt ttccagactg ctttcgacct ctcgccctcc accgtgctac 3001 tccagccctt cttggagtcc gatccgcgcg caacgcaact tgccatctcc tatgtccgtt 3061 ataatggtga cagcgaaaca ttcgtgccaa cagtgcgtcc atcaatgatt tcggaggcga 3121 cgttgcttgt tgagcgtact ctctcacacg aatacaatct tttcggttta tgccgtggtg 3181 acattattct ggggcagcat atgactcctg ctgcgttcaa tccgctatct ccacctcctt 3241 ccgtcgtttt caacaggggc gacgctgagg ttcacgagtt cggttcccgc agtttcgcca 3301 acttcggcat gaatggagag gaaatcctgg ttatggacgc gaatggcgta cgtcgtcctt 3361 tacttggccg ttgggttatg ccgttgcaac ttctgatggt gaatattggc gtctttccca 3421 aattactgtt ggatcgtatt ctaaaagggc gtttgtacat ccgtctcgaa gtcggcgctt 3481 atccctatac tgtgcagtac taccagggac gtgagttcac ggatggtttc tcactgcttg 3541 agcagtggat gtctaaagtg tcgcctatgg gcattccccc tgttcctttc cttatgcccc 3601 aatccgaagg acataacatc acttccggta tggttactca ctacatctgg tccactgaat 3661 acaatgatgg gtcacttttc gctactaaca ctgatctacc ggtcactgtg ttcggccccg 3721 accgctccat cccgattgag cgttaccgtg cactcgtgga cccgggcgct ctccctgcta 3781 ccaaccagct cccgcacact gtcgaccttt actgctcact gaggcgttat tacttagaga 3841 cccctcctat cacagctact gttactactt atggcgacgg actccccgcg ctgaaccatt 3901 agagcggcga ggctagacgc gagccgatcg cgtcgactct cgttggaggt tattcatc //