LOCUS KX398272 3958 bp RNA linear VRL 23-NOV-2016 DEFINITION Avian orthoreovirus strain 3211-V-02 core shell gene, complete cds. ACCESSION KX398272 VERSION KX398272.1 KEYWORDS . SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3958) AUTHORS Farkas,S.L., Marton,S., Dandar,E., Kugler,R., Gal,B., Jakab,F., Balint,A., Kecskemeti,S. and Banyai,K. TITLE Lineage diversification, homo- and heterologous reassortment and recombination shape the evolution of chicken orthoreoviruses JOURNAL Sci Rep 6, 36960 (2016) PUBMED 27830770 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3958) AUTHORS Farkas,S.L., Marton,S., Dandar,E., Gal,B., Balint,A., Kecskemeti,S. and Banyai,K. TITLE Direct Submission JOURNAL Submitted (16-JUN-2016) Pathogen discovery, Institute for Veterinary Medical Research, Centre of Agricultural Research, Hungarian Academy of Sciences, Hungaria krt. 21., Budapest, Pest 1143, Hungary COMMENT ##Assembly-Data-START## Assembly Method :: CLC Bio software v. v. 7.0.4. Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3958 /mol_type="genomic RNA" /country="Hungary" /collection_date="2002" /host="Gallus gallus" /db_xref="taxon:38170" /strain="3211-V-02" /organism="Avian orthoreovirus" CDS 21..3902 /codon_start=1 /protein_id="APD15423.1" /translation="MSSRKVARRRHKDATESQDTKNTDKSKPSSTDVPDSAKTATDKK VTAPKSDTPAASTLSSTDGASQVSVAKQTNDNDASVKESSPKPTVSSDGKDGMHGAVK AQDTKATAAVDNNKDKDVVFGGAGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKA MMEQKQLVAGLPKQPKPSNHLCTVCMAQFASADALTIHQTTHSIGSNAALTSFSISTA VEEFIQSWAAATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIVPDDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETADALTLSVREMWMSRISQMNIAPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPSARLDRDAIVTHVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNWLRQINLAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSTI AEAVLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDTEVYEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFSLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTID LYCSLRRYYLETPPITATVTTYGDGLPALNR" /product="core shell" ORIGIN 1 gcttttctcc gaacgccgaa atgagttcgc gcaaagtggc tagacgtcgt cataaggatg 61 ctactgaatc tcaggatacc aagaatacag ataagtctaa gccatcttct actgacgtac 121 ctgattctgc taagactgcc acagataaga aagttactgc cccaaagtca gacaccccag 181 ccgcttcaac tctctcatcc actgatgggg cctcacaggt atctgtcgcc aaacagacga 241 atgataacga cgcctcagtt aaagagtcat ctcccaaacc tactgtatct agtgatggga 301 aggatggaat gcatggtgct gtgaaggcac aagacactaa ggctactgcc gctgtggata 361 ataataagga taaagatgta gtgttcggcg gtgcagggtc tggtgacaaa aacgctatca 421 cgaagactgg ttctgttgac aatgatgggg gagttaaagt tgttccagcc aaagatgcta 481 ccatatcctc agctaaagcc atgatggaac agaagcaact ggtcgctggt cttccaaagc 541 aaccgaagcc atctaaccat ctgtgcaccg tttgcatggc tcaatttgct tcagctgacg 601 ctctcaccat tcaccagact acacattcca ttggctccaa cgctgcgctg accagcttct 661 cgatctcaac cgctgtagaa gagttcatcc aatcttgggc tgcagctacg tccactgcta 721 acactaagac tgctttgact gtgtcagacg ttgattcgtt aatgatgact gaaggtatac 781 gtttgataac ctgggactct ggtttatgta cttcatttga gctcgtcccg atcgttcatt 841 caaacactgt tcaggacgtt atctcatact cctggtttac ttcaagctac aatattacga 901 ctccatttcc gcaagcaaca gttgtgcgaa ttgtcttgcg cacaaattgg gccgctaaat 961 tagattctcc ttcttcgtct cgtgagtgtg atcttcgtct tgctccacct actgaaagta 1021 atgcgcggtc attttcaatg ttgcttaaca cgggtgcgac gccggaaggt actttcaatc 1081 ccaacacgct tcgtatgaat gtattgcaga tgtgtcttca gtacgttctg gccaacttac 1141 atttaaatcg tagcactcag ttcactatgg atttaaccgc tgcagctcct aatctgtctg 1201 cgtctcagct tcgcattgtt ccagatgaca aggagggtaa atggtttcca gtcatgtatc 1261 cttctcgagt caacatccca ctattcaaca agacagctga tttcgtcaat cagtgtattc 1321 gtgataggat cggtcgctac gatcgtgctc aaacttttgc tggtgcacct tctgaatggg 1381 ctgacatgtg ggaaaccgcg gacgctttaa ctctctctgt ccgtgagatg tggatgtcgc 1441 gcatttcaca gatgaacatt gctcctgccg atatcgctga cgccatttcc agatgttctc 1501 agtctttgct gactgttgct gctcccacgg ctccttctgt ggctcgtttg ctaccctggc 1561 gggtcagttc tgatgagagg cagcttcttc aattgttaat gtacttaaat gttggcacta 1621 gcgctgatta cgtccagcct attctgtccg cgtttgcacg taccctatct cgtgtgtccc 1681 cactacgcat taatcctact ttaatcgcta acgccatgtc aacgattgtt gaaagtacta 1741 cgaatactca aagtcctgca gctgctatcc tttctaagct taaacctgtt gcatctgatt 1801 tctcagactt tcggttagcg tgcgctgctt ggctgtataa tggttgcgtt cagacttacc 1861 tatctgaaga ttcgtatcct agtagtggtg gatccgtcac tagtatcgac accttggttg 1921 acatgttcgt gtgtttgctg gctctgcctt tagtcactga tcctaatgcc ccatgccagg 1981 ccttcatggt tgttgccaat gccatggttg gttacgaaaa tctgccgatg gatgacccaa 2041 actttaccca gcagaggtta gctgcagcgt tcaacaatcc gactacctgg ccgcagtgct 2101 tccttcaccc ccagaacatc gatcgtcgtc agtgtccaat cctgtcgtgg tgggctcagc 2161 agattcaccg aaattggcct acaccatctc agattacgta tggcgcgcca gatatcattg 2221 ggtccgctaa tctattcact cctcctgacg tattgctact accactgcaa catcgtccca 2281 tccgtatcac caatcccact ctgaattttg ataatgagtt gacaacttgg cgtaatactg 2341 tggtcgattt agtcctacgc atcattgaca gtggtcggta tcaaccgaat tggaatcagt 2401 caatccgtgc gtctatgcgc aacgctatga ccaacttcag gattatcaag tcctacaccc 2461 ctgcttacat cgctgagttg ctaccagtgg aattagcggc tatcgctccg actttgccct 2521 ttcaaccttt ccaggtacct tccgctcgct tggatagaga cgccatcgtc actcatgtca 2581 atgtgtccag acaggctccc aacaatcttg ctcagccggc attgaacatg tcgatgacgt 2641 atcaacgtac gggggttccg atctcactta gcgctcgtcc cttagccgtc gcccttctgt 2701 caggccagta tcccactgat cctcccctcc agaccaatgt ttggtatgtg aacactctca 2761 cgcctctcta ttctaatgat ggtctattca acaatgtgca acatgctatg gtcgcttctg 2821 aggcctatgc taccttaatt actatgctgg cgcagtgcac tgatatgcag tatcctgtgg 2881 atcggccgct gaactggctt cgtcagatca acctagctgc caatgaagct acgatttttg 2941 gtcgttcaat caattcactc ttccagaccg ctttcgatct ctcaccctct accgtgctgc 3001 tgcagccttt cctggaatca gatccacgcg caacacaact cgctatttcc tacgtgcgct 3061 ataatggtga cagcgagact ttcgtgccga cagtgcggcc atcgacgatc gcagaggcgg 3121 tgttgcttgt tgagcgtact ctctcgcatg aatacaatct ctttggcctg tgccgtggcg 3181 acatcattct gggacaacac atgactccta ctgcatttaa tccgttagct ccacctccct 3241 ctgtcatttt taacaggggt gacactgagg tctatgagtt cggttcccgc agtttcgcca 3301 attttggcat gaatggggag gagattttgg ttatggatgc gaatggcgtg cgccgtccat 3361 tactcggtcg ttgggtaatg ccattacaac tcttgatggt gaacattggt gttttcccta 3421 agctgctgtt agaccgtatt ctaaaggggc gtctgtatat acgactagaa gttggcgcgt 3481 acccttacac cgtgcagtac tatcaaggac gtgagttcac ggatggtttc tcgctgcttg 3541 agcaatggat gtctaaagta tcacccatgg gcatcccccc tgtcccattt cttatgccgc 3601 aatccgaggg tcacaacatt acttcgggca tggtcaccca ctatatctgg tccactgaat 3661 ataacgatgg gtcgcttttc gccactaaca cggacctgcc agtcactgtg ttcggtcctg 3721 atcgaaccat cccaatcgag cgttatcgtg cgcttgttga cccaggtgct ctccccgcta 3781 ctaatcagtt accacacacc attgatctct actgttcact gagacgctac tatctggaga 3841 cacctcccat cactgctact gttactactt atggcgacgg actccccgcg ctgaaccgtt 3901 agagcggcga ggctagacgc gagctgatcg cgtcgactct cgttggagat tattcatc //