LOCUS KX398282 3958 bp RNA linear VRL 23-NOV-2016 DEFINITION Avian orthoreovirus strain 3457-M-11 core shell gene, complete cds. ACCESSION KX398282 VERSION KX398282.1 KEYWORDS . SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3958) AUTHORS Farkas,S.L., Marton,S., Dandar,E., Kugler,R., Gal,B., Jakab,F., Balint,A., Kecskemeti,S. and Banyai,K. TITLE Lineage diversification, homo- and heterologous reassortment and recombination shape the evolution of chicken orthoreoviruses JOURNAL Sci Rep 6, 36960 (2016) PUBMED 27830770 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3958) AUTHORS Farkas,S.L., Marton,S., Dandar,E., Gal,B., Balint,A., Kecskemeti,S. and Banyai,K. TITLE Direct Submission JOURNAL Submitted (16-JUN-2016) Pathogen discovery, Institute for Veterinary Medical Research, Centre of Agricultural Research, Hungarian Academy of Sciences, Hungaria krt. 21., Budapest, Pest 1143, Hungary COMMENT ##Assembly-Data-START## Assembly Method :: CLC Bio software v. v. 7.0.4 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3958 /mol_type="genomic RNA" /country="Hungary" /collection_date="2011" /host="Gallus gallus" /db_xref="taxon:38170" /strain="3457-M-11" /organism="Avian orthoreovirus" CDS 21..3902 /codon_start=1 /protein_id="APD15435.1" /translation="MSSRKVARRRHKDATESKDTKNTDKSKPSSTDVPDSAKTATDKK VTAPKSDTPAASTPSSTDGASQLSVAKQTNDNDASVKESSPKPTVSSDGKDGMHGAVK TQDVKATAAVDNNKDKDVVFGGAGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKA MMEQKQLVAGLPKQPKPSNHLCTVCMAQFASADALTIHQTTHSIGSNAALTSFSISTA VEEFIQSWAAATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIVPDDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETADALTLSVREMWMSRISQMNIAPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLIAMLAQCTDMQYPVDRPLNWLRQINLAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI AEAVLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDTEVYEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTID LYCSLRRYYLETPPITATVTTYGDGLPALNR" /product="core shell" ORIGIN 1 gcttttctca gaccgcccaa atgagttcgc gcaaagtggc tagacgtcgt cataaggatg 61 ctactgaatc taaagatacc aaaaacacag ataagtctaa gccatcttcc actgacgtac 121 ctgattctgc taagactgcc acagataaga aagttactgc tccaaaatcg gatactccag 181 ctgcttctac tccctcctct actgacggag cctcacagtt gtctgtcgct aaacagacaa 241 atgataatga cgcctcagtt aaggagtcat ctcccaaacc tactgtgtct agtgatggaa 301 aagatggaat gcatggtgct gtaaaaacac aggacgttaa ggctactgcc gccgtggata 361 ataataagga taaagacgta gtgttcggtg gtgctgggtc tggtgacaaa aacgctatca 421 cgaagaccgg ttctgttgac aacgatgggg gcgtcaaagt cgttccagcc aaagatgcta 481 ccatatcctc agctaaagct atgatggaac agaaacaact ggttgctggg cttccaaagc 541 aaccgaagcc gtccaaccat ctgtgcaccg tttgcatggc tcaatttgcg tcagctgacg 601 ctctcaccat tcatcagact acacattcca tcggctctaa cgctgcttta acaagcttct 661 cgatctcaac cgctgtagaa gaatttatcc aatcttgggc cgcggccacg tccactgcta 721 atactaagac tgctctgact gtttcagacg ttgattcgtt aatgatgact gaaggtatac 781 gtctgataac ttgggactcc ggtttatgta cttcatttga gctcgtcccg attgtccatt 841 caaacactgt tcaagacgtc atttcatact cctggtttac ttcgagttac aatatcacga 901 ctccgtttcc gcaagcaaca gttgtgcgga ttgtcttacg cacaaattgg gccgctaaat 961 tagattctcc ttcttcatca cgtgagtgtg atcttcgtct cgctccacct actgagagta 1021 atgcgcggtc attctcaatg ctgcttaaca cgggtgcgac accggaaggt actttcaatc 1081 ccaacacgct tcgtatgaat gtattgcaga tgtgtcttca gtacgttcta gccaatttgc 1141 atttaaatcg tagcactcag tttactatgg atttgaccgc tgcagctcct aacctgtctg 1201 cgtctcagct tcgcattgtt ccagatgaca aggaaggtaa atggtttcca gtcatgtatc 1261 cttcccgagt taacatcccg ctgttcaata agacggctga ttttgtcaat cagtgcattc 1321 gtgataggat tggtcgctac gatcgtgctc aaacttttgc tggtgcaccc tcagaatggg 1381 ccgacatgtg ggaaaccgca gatgccttga ctctttctgt ccgtgagatg tggatgtcac 1441 gcatttcaca gatgaacatc gctcctgctg atatcgctga tgccatttct agatgttctc 1501 agtcgttact gactgtcgct gcacccacgg ctccttctgt ggctcgtttg ctaccctggc 1561 gggtcagttc tgatgaaaga cagctcctcc agttgctaat gtacttgaat gttggcacta 1621 gcgctgacta cgtccagccg attctgtctg cgtttgctcg taccctgtcg cgtgtatccc 1681 cactccgcat caatcccact ctaatcgcta atgctatgtc aacgatcgtt gaaagcacca 1741 cgaatactca aagtcctgca gctgctatcc tctctaagct taaacctgtt gcctctgact 1801 tctcggattt tcggttggcg tgcgccgctt ggctgtataa tggttgcgtt cagacttacc 1861 tgtctgaaga ctcgtatcct agtagtggtg ggtctgtcac cagtatcgac accctagttg 1921 acatgttcgt gtgtttgttg gctctgcctt tagtcactga tcctaatgcc ccatgccagg 1981 cctttatggt tgtcgccaat gctatggttg gttacgaaaa ccttccgatg gatgatccga 2041 acttcactca gcagagatta gctgcagcgt tcaacaatcc gactacctgg ccgcagtgct 2101 ttcttcaccc ccagaacatt gatcgtcgtc agtgcccaat cctgtcatgg tgggctcagc 2161 aaattcaccg aaattggcct acaccgtctc agatcacgta tggcgcgcca gacatcattg 2221 ggtctgccaa tctattcact cctcctgacg tgctgctact cccattgcaa catcgtccca 2281 ttcgtatcac taaccccact cttaattttg ataatgaatt gacaacttgg cgtaacactg 2341 tggtcgattt agtcctgcgt attattgata gtggtcggta tcaaccgaat tggaatcagt 2401 caattcgtgc gtctatgcgt aacgctatga ctaacttcag gatcatcaag tcctacactc 2461 ctgcttacat cgctgagttg ctgccggtag aattagcggc tatcgctccg actttgccct 2521 ttcagccttt tcaggtgcct tttgctcgtt tggatcgaga tgctatcgtc acccatgtca 2581 acgtgtctag acaggcgcct aacaatcttg ctcagccggc attgaacatg tctatgacat 2641 atcaacgtac gggggtccct atctcgctta gcgcccgtcc cttagccgtc gcacttctgt 2701 caggccagta tcccactgat cctcccctcc agaccaacgt ttggtatgtg aatactctca 2761 cgcctctcta ttctaatgat ggtctattca acaatgtgca acatgctatg gtcgcttctg 2821 aagcttatgc taccttaatt gctatgctgg cacagtgcac tgatatgcag tatcctgtgg 2881 atcgtccact gaactggctt cgtcagatca acctagccgc taatgaagct acgattttcg 2941 gtcgctcaat caattcactt ttccagaccg ctttcgacct ctcaccctct actgtgttac 3001 tgcaaccttt cttggagtca gatccacgcg cgacacaact tgctatttcc tacgtgcgtt 3061 ataatggtga cagcgagact ttcgtgccga cggtgcggcc atcaatgatc gcagaagcgg 3121 tattgcttgt tgagcgtact ctctcgcatg agtacaatct tttcggcctg tgtcgtggcg 3181 acattattct aggacagcac atgactccta ctgcgtttaa tccgttagct ccacctcctt 3241 ctgtcatttt caacaggggt gacactgaag tctatgagtt cggttcccgc agtttcgcta 3301 attttggcat gaatggagag gagatcctgg ttatggatgc gaatggcgtg cgccgtccat 3361 tactcggtcg ttgggtgatg ccattacaac tcttgatggt gaacattggt gtttttccca 3421 agctattgct agatcgtatt ctaaaagggc gtctgtacat acgattggag gttggcgcgt 3481 acccttacac tgtgcagtat taccaaggac gtgagttcac ggatggtttc acactgcttg 3541 agcaatggat gtctaaagta tcaccgatgg gtatccctcc cgtcccattt ctgatgccgc 3601 aatctgaggg acataacatc acttcgggca tggttaccca ctacatttgg tccactgagt 3661 ataacgatgg atcactcttc gccactaaca cggacctgcc agtcactgtg ttcggtcctg 3721 atcgaactat cccaatcgag cgttatcgtg cgcttgttga cccaggtgct ctccccgcta 3781 ctaaccaatt gccgcacacc attgatcttt actgctcgct gagacgctac tatttggaga 3841 cgcctcccat caccgctact gttactactt atggcgacgg actccccgcg ctgaaccgtt 3901 agagcggcga ggctagacgc gagctgatcg cgtcgactct cgttggagat tattcatc //