LOCUS KF741696 3959 bp RNA linear VRL 30-NOV-2014 DEFINITION Avian orthoreovirus strain 526 segment L1, complete sequence. ACCESSION KF741696 VERSION KF741696.1 KEYWORDS . SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3959) AUTHORS Teng,L., Xie,Z., Xie,L., Liu,J., Pang,Y., Deng,X., Xie,Z., Fan,Q. and Luo,S. TITLE Direct Submission JOURNAL Submitted (17-OCT-2013) Department of Biotechnology, Guangxi Veterinary Research Institute, 51 You Ai Road, Nanning, Guangxi 530001, China FEATURES Location/Qualifiers source 1..3959 /mol_type="genomic RNA" /db_xref="taxon:38170" /strain="526" /segment="L1" /organism="Avian orthoreovirus" CDS 22..3903 /codon_start=1 /protein_id="AIS22904.1" /translation="MSSRKVARRRHKDAIESKDIKSTNKSKPSSTDVKESVDSATDKK VTVPTPANPAASTPSSTDGASQTSVAKQTNDNDTSVKESSPKPTVSSDGKDGMHGAVK SQDAKATIAVDNNKDRDVVFGGAGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKA MMEQKQLVAGLPKQPKSANHLCTVCMAQFASADALTIHQTTHSIGSNAALTSFSISTA VEEFIQSWAAATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIVPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETADALTLSVREMWMSRISQMNITPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFVRLDRDAIVTHVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNWLRQINLAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVVFNRGDADVFEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTID LYCSLRRYYLETPPITATVTTYGDGLPALNH" /product="lambda-A protein" misc_feature 352..3864 /db_xref="CDD:212564" /note="inner capsid protein lambda-1 or VP3; Region: lambda-1; cd11674" misc_feature order(565..567,574..576,613..615,625..627) /db_xref="CDD:212564" /note="Zn binding site [ion binding]; other site" misc_feature order(538..549,562..564,577..579,694..699,1504..1509, 1513..1515,1519..1521,1702..1704,1714..1716,1723..1728, 2287..2298,2305..2310,2356..2358,2368..2376,2383..2385, 2401..2403,2407..2415,2419..2421,2431..2433,2440..2445, 2449..2451,2455..2457,2722..2727,2731..2733,2740..2742) /db_xref="CDD:212564" /note="homooligomer interface [polypeptide binding]; other site" misc_feature order(1345..1362,1378..1380,1384..1386,1426..1428, 1435..1440,1447..1452,1456..1458,1462..1464,1468..1473, 1477..1482,1519..1542,1561..1563,2209..2211,3100..3102, 3106..3108,3115..3117,3775..3783,3823..3825,3829..3831) /db_xref="CDD:212564" /note="VP6 interface [polypeptide binding]; other site" ORIGIN 1 gctttttctc cgaacgccga aatgagttcg cgcaaagtgg ctagacgtcg tcataaggat 61 gctattgaat ctaaggacat taagagcact aataagtcta agccatcttc caccgacgtt 121 aaagaatctg tggatagtgc cactgataag aaggtaaccg ttccaacgcc agctaatcca 181 gccgcctcta ccccctcttc cactgacgga gcttcacaga catccgtcgc taagcagacg 241 aatgataatg atacttcagt taaggagtca tcccctaagc ctactgtatc tagcgatggg 301 aaggatggaa tgcatggcgc tgtgaagtct caagacgcta aggctaccat agctgtagat 361 aataacaagg atagagatgt agtatttggt ggtgcgggtt ctggtgataa gaatgctatc 421 acaaagactg gttccgttga caatgatggg ggtgttaagg tcgttccagc caaggacgct 481 acgatatctt cggccaaagc tatgatggag caaaaacagt tagtcgccgg tctaccgaaa 541 caaccaaagt ctgctaatca tttgtgtacc gtttgtatgg cccagtttgc atcggctgac 601 gcccttacta tccaccaaac cacgcattcc attggttcca atgctgctct gacgagcttc 661 tcgatttcta ctgccgttga agaattcatt caatcgtggg ctgctgctac gtccacggcc 721 aacactaaaa cggccttgac tgtgtctgac gtcgactcac tgatgatgac tgagggaata 781 cgcctcataa cttgggattc tgggttatgc acgtcctttg aactcgtccc tattgtccat 841 tcaaacactg ttcaagatgt catttcgtat tcatggttca catcaagcta caacatcacg 901 actccctttc cacaagcgac tgttgtgcga attgtcttgc gtactaactg ggccgccaaa 961 ttggattccc cttcatcgtc gcgcgaatgt gatcttcgtc tcgctccacc gacagagagc 1021 aatgctcggt cattttctat gctgctcaat acgggtgcga ctccagaagg cactttcaac 1081 cccaacaccc ttcgtatgaa tgtgctgcag atgtgtcttc agtatgttct agccaactta 1141 cacttgaacc gtagtactca gtttaccatg gatttgaccg ccgcggctcc caacctttct 1201 gcatctcaac tacgcatcgt tccagaggac aaggagggta aatggttccc agtcatgtat 1261 ccatctcgag tgaacatccc actgttcaat aagacggctg attttgttaa ccagtgcatt 1321 cgtgatagaa ttggtcgata cgatcgcgcc cagactttcg ctggtgcgcc ctctgagtgg 1381 gctgacatgt gggaaacagc agacgcgtta actctttccg tccgtgaaat gtggatgtca 1441 cgtatttctc agatgaatat cactcccgct gatatcgctg acgctatctc cagatgctct 1501 cagtccctgc tcactgttgc tgcacctaca gctccttccg tagctcgttt attaccttgg 1561 cgagtcagtt ctgatgagag gcagctcctc caactgttga tgtatttaaa tgttggtact 1621 agtgccgact acgttcaacc gattttgtcc gcgttcgctc ggactctatc tcgtgtgtca 1681 ccactacgta ttaatcctac tctaatcgct aatgccatgt cgacaattgt cgagagcacc 1741 actaacaccc agagccccgc tgcggctatc ttgtcaaagc tcaaacctgt cgcttccgat 1801 ttctccgact tcagattggc gtgtgctgct tggttatata atggttgcgt ccaaacatac 1861 ttgtctgagg attcataccc aagtagcggt gggtccgtca ctagcatcga tacgttagtt 1921 gatatgtttg tgtgcttact ggcgttgcct ctggttactg accctaatgc tccgtgtcaa 1981 gctttcatgg ttgttgctaa cgccatggtt ggttacgaga atctgcctat ggatgatccc 2041 aatttcactc agcaaagatt ggctgcagct ttcaataatc ctactacctg gcctcagtgc 2101 ttcctccacc ctcaaaatat tgaccggcgc cagtgtccaa ttctctcgtg gtgggctcag 2161 cagattcatc gtaattggcc tacgccgtct cagattactt acggcgcacc tgatatcatc 2221 ggatctgcta acttgttcac tcctcctgat gtgttgctgc ttccactaca acataggccc 2281 atacgtatca ccaatcccac cctgaacttc gataatgagt tgacgacttg gcgtaacaca 2341 gtggttgatc tagtcctgcg catcatcgat agtggtcgat accaacctaa ttggaatcaa 2401 tccattcgtg cgtctatgcg gaatgcgatg acgaatttcc ggattatcaa gtcatacact 2461 cctgcttaca tagcagaact gctacctgtg gaattggcag ccatcgctcc aactctaccc 2521 ttccagcctt tccaggtgcc attcgttcgt ttagaccgtg acgctatcgt cacccatgtc 2581 aatgtgtcca ggcaagctcc caataatctc gctcaacctg cattgaacat gtccatgacg 2641 tatcagcgca caggagttcc aatctctctt agcgcccgtc ccttggcagt cgctcttttg 2701 tcaggtcagt accctactga tcctcctctt cagactaatg tttggtacgt gaacactctc 2761 acacctctct attccaatga tggtctcttc aacaacgtgc agcacgctat ggttgcttct 2821 gaagcttacg ctaccctgat cactatgctg gctcagtgta ctgatatgca gtatcctgtg 2881 gatcggccat tgaactggct tcgtcagatt aatttggctg ctaatgaggc gacgattttt 2941 ggtcgctcaa ttaactcact tttccaaact gctttcgacc tctcaccctc cactgtgttg 3001 cttcagcctt tcttggagtc tgatccacgt gcaacgcaac tcgccatttc ttacgttcgc 3061 tataatggtg acagtgagac tttcgtgcca acagtacgtc cgtccatgat ctcagaggcg 3121 acattgctcg ttgagcgcac tctctcacat gaatacaacc tttttggttt gtgtcgtggt 3181 gacatcattc tgggacagca catgactccc actgcattca atcctctggc tccgcctcct 3241 tctgtcgttt ttaacagggg tgacgctgat gtttttgagt ttggctctcg tagtttcgcc 3301 aacttcggta tgaatgggga ggagatcttg gttatggatg caaacggtgt gcgtcgtcca 3361 ttacttggcc ggtgggttat gccgctgcag cttctgatgg tgaatattgg cgtatttccc 3421 aagctgctgt tggatcgtat tttaaaagga cgcttataca tcagacttga ggttggcgcg 3481 tatccctaca ctgtgcaata ttaccaggga cgcgaattca cggatggctt tacactgctt 3541 gagcaatgga tgtctaaggt gtcacccatg ggtatccctc ctgtcccttt cctcatgcca 3601 cagtccgagg gacacaacat tacttcaggt atggtcactc attacatctg gtccactgag 3661 tataatgacg ggtcactctt cgctacgaac actgatctac ccgttactgt gtttggtcct 3721 gaccgtacca tcccaatcga gcgctaccgt gcactcgttg atccaggcgc tcttcctgcc 3781 actaaccagc taccgcacac catcgatctc tactgttcac tgagacgtta ctatctggag 3841 acacccccta tcactgctac tgtcaccact tatggcgatg gactccccgc gctgaaccat 3901 tagagcggcg aggctagacg cgagttgatc gcgtcgactc tcgttggaga ttattcatc //