LOCUS KX398242 3944 bp RNA linear VRL 23-NOV-2016 DEFINITION Avian orthoreovirus strain 875-Bi-05 core shell gene, complete cds. ACCESSION KX398242 VERSION KX398242.1 KEYWORDS . SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3944) AUTHORS Farkas,S.L., Marton,S., Dandar,E., Kugler,R., Gal,B., Jakab,F., Balint,A., Kecskemeti,S. and Banyai,K. TITLE Lineage diversification, homo- and heterologous reassortment and recombination shape the evolution of chicken orthoreoviruses JOURNAL Sci Rep 6, 36960 (2016) PUBMED 27830770 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3944) AUTHORS Farkas,S.L., Marton,S., Dandar,E., Gal,B., Balint,A., Kecskemeti,S. and Banyai,K. TITLE Direct Submission JOURNAL Submitted (16-JUN-2016) Pathogen discovery, Institute for Veterinary Medical Research, Centre of Agricultural Research, Hungarian Academy of Sciences, Hungaria krt. 21., Budapest, Pest 1143, Hungary COMMENT ##Assembly-Data-START## Assembly Method :: CLC Bio software v. v. 7.0.4 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3944 /mol_type="genomic RNA" /country="Hungary" /collection_date="2005" /host="Gallus gallus" /db_xref="taxon:38170" /strain="875-Bi-05" /organism="Avian orthoreovirus" CDS 7..3888 /codon_start=1 /protein_id="APD15387.1" /translation="MSSRKVARRRHKDATESKDTKSNNKSKPSPADVKESVGNATDKK VTVPTPDNPAASTPSSTDGASQTSVAKQTNDNDSSVKESAPKPTVSSDGKDGMHGAVK SQDAKATVAVDNNKDRDVVFGGAGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKA MMEQKQLVAGLPNQPKSASHLCTVCMAQFASSDALAIHQTTHSIGSNAALTSFSISTA VEEFIQSWATATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLSNLHLNRSTQFTMDLTAAAPNL SASQLRIVPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETADSLTLSVREMWMSRISQMNITPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTYVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNRLRQINLAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDTDVYEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPRTID LYCSLRRYYLETPPITATVTTYGDGLPALNH" /product="core shell" ORIGIN 1 gcggaaatga gttcgcgcaa agtggctaga cgtcgtcata aggatgctac tgaatctaag 61 gacactaaga gtaataataa gtctaagcca tctcctgctg acgttaaaga atctgtcgga 121 aacgccacag acaagaaagt taccgttcca acgccagaca atccagccgc ctctactccc 181 tcctccactg atggggcttc acaaacatct gttgctaagc agacgaatga taatgatagc 241 tcagttaagg aatcggctcc caagcctact gtgtccagtg atgggaaaga tgggatgcat 301 ggtgcggtga agtcgcaaga tgctaaagcg accgtggctg tggataacaa taaggatcga 361 gacgtagtat ttggtggtgc gggttctggt gacaagaatg ctatcacgaa gactgggtct 421 gttgataatg atgggggtgt taaggtcgtt ccagccaaag acgctacgat atcttcagcc 481 aaggctatga tggagcaaaa gcagcttgtc gctggccttc cgaaccaacc gaagtccgct 541 agtcatttgt gtactgtctg catggcccag ttcgcgtcat ctgacgctct tgctattcac 601 cagactactc attctattgg ttccaatgct gctctgacga gcttttcaat ctctactgct 661 gttgaagaat tcattcagtc atgggctact gctacgtcta cagccaacac taagacggct 721 ttgaccgtgt ctgacgttga ttcattgatg atgactgaag gaatacgcct cataacttgg 781 gattccgggc tatgcacatc ttttgaactc gttccgattg tccattcaaa tactgttcaa 841 gatgttattt cgtattcgtg gtttacgtca agctataaca tcactactcc ttttccgcag 901 gcgactgtcg tgcgaatcgt tttacgtacc aactgggctg ctaaattgga ctcaccttca 961 tcatcgcggg aatgtgatct tcgtcttgcc ccacctacag agagtaacgc taggtcattc 1021 tcgatgctgc ttaatacggg tgcgactcca gaaggtactt tcaaccccaa cacccttcgt 1081 atgaatgtgc tacagatgtg tcttcagtat gtgctatcca acttacactt aaaccgtagt 1141 actcaattta ccatggattt gactgccgcg gctcccaatc tttccgcgtc tcaactccgt 1201 attgttccag aggataagga gggtaaatgg tttcctgtca tgtatccatc ccgagtgaac 1261 atccccttgt tcaataagac tgctgatttc gtcaatcagt gcattcgtga taggattggc 1321 cggtatgatc gtgctcaaac tttcgctggt gcgccttctg aatgggctga catgtgggag 1381 acagcggact cgctaactct ctccgttcgt gaaatgtgga tgtcacgtat ttctcagatg 1441 aacatcactc ctgctgacat tgctgacgct atctccagat gttctcagtc cttactcact 1501 gttgctgcac ctacggctcc ctctgtggct cgtttgttac cttggcgggt tagttctgat 1561 gagaggcagc ttctccaact gttaatgtat ttaaatgttg ggaccagtgc cgactacgtt 1621 caaccgattc tttctgcgtt tgctcggact ctgtctcgtg tgtcaccact acgcattaat 1681 cccactttaa tcgctaatgc catgtcgacg attgtcgaga gcactactaa cacccagagt 1741 cccgctgcgg ctatcttatc aaagcttaaa cctgtggcct ctgatttttc cgacttcaga 1801 ttggcgtgtg ccgcttggtt atataacggt tgcgttcaga catacctgtc tgaggattca 1861 tatccaagca gtggtggatc cgttactagc atcgacacgt tggttgatat gtttgtgtgt 1921 ttgctggcgt tacctctagt tactgatcct aatgctccgt gtcaagcttt tatggttgtc 1981 gctaacgcca tggttggtta cgagaatcta cctatggatg atcccaattt tactcaacag 2041 agattggctg cagcgttcaa taatcctacc acctggcctc agtgcttcct tcaccctcaa 2101 aatattgatc gtcgccagtg ccccattctc tcttggtggg ctcagcaaat ccaccgtaat 2161 tggcctacac catctcagat tacttacggt gcgcctgata tcatcggatc cgctaacttg 2221 ttcactccac ctgacgtgtt gctgcttcca ttacaacaca ggcccatccg tattaccaat 2281 cccaccctga acttcgataa tgagttaacg acttggcgta ataccgtggt cgacttagtc 2341 ctgcgcatta tcgatagtgg tcggtaccag cctaactgga atcagtccat tcgcgcatct 2401 atgcgaaatg cgatgacgaa ttttaggatt atcaagtcgt acactcccgc ttacatagcg 2461 gaactgctac ccgtagaact ggccgctatt gctccaactt tgcccttcca gcctttccag 2521 gtaccatttg ctcgcttaga tcgtgacgct atcgtcacct atgtcaatgt gtctcggcaa 2581 gctcccaaca atcttgctca acctgcgttg aacatgtcta tgacgtacca gcgcacagga 2641 gttccaatct ctctcagtgc ccgtccctta gcggtcgctc ttttgtcagg ccagtacccc 2701 actgatcctc ctcttcagac caacgtttgg tacgtgaaca ctctcacacc tttatattcc 2761 aatgatggtc tctttaataa cgtgcaacat gcgatggtcg catctgaagc ttacgctact 2821 ttgatcacta tgctagcaca gtgcactgac atgcaatacc ccgtggatcg acctttgaac 2881 aggctgcgtc agattaattt ggctgccaat gaggcgacga tttttggtcg ttcgattaat 2941 tcactcttcc aaaccgcctt tgacctctcg ccttccactg tgttgcttca acctttcttg 3001 gagtctgatc cacgtgcaac gcaactggct atttcttacg ttcgctataa tggtgacagt 3061 gagaccttcg taccgacagt gcgtccgtct atgatctcag aggcgacatt gctcgttgag 3121 cgcactctct cgcacgagta caatctcttt ggtctatgtc gtggtgacat catcctggga 3181 caacacatga ctcctactgc gttcaacccc ttagctcctc ctccttccgt catttttaac 3241 aggggcgata ctgatgttta cgaatttgga tctcgtagct tcgctaactt cggtatgaat 3301 ggggaggaga ttttggttat ggatgcgaac ggtgtacgtc gtccattact tggccggtgg 3361 gttatgccac tgcagctctt gatggtgaat attggcgtat ttcccaagct gctgttggat 3421 cgtatcttga aggggcgtct atacatcaga cttgaggttg gcgcatatcc ctacactgtg 3481 cagtactacc agggacgtga gttcactgat ggtttcacac ttcttgagca atggatgtcc 3541 aaagtgtcgc ccatgggtat ccctcctgtt ccttttctca tgccacagtc cgaggggcac 3601 aacattactt caggcatggt cacccattac atctggtcta ctgagtacaa tgacgggtca 3661 ctttttgcca cgaacactga cctgccagtg actgtatttg gacctgaccg caccattcca 3721 attgaacgtt accgtgcact cgttgatcca ggcgctctcc ctgctactaa ccaactgccg 3781 cgcaccatcg atctttactg ttcactgaga cgttactacc tggagacacc tcccattact 3841 gctactgtca ctacttatgg cgatggactc cccgcgctga accattagag cggcgaggct 3901 agacgcgagc tgatcgcgtc gactctcgtt ggagattatt catc //