LOCUS NC_015128 3907 bp RNA linear VRL 14-FEB-2011 DEFINITION Avian orthoreovirus segment L3, complete genome. ACCESSION NC_015128 VERSION NC_015128.1 DBSOURCE BioProject accession PRJNA62875 KEYWORDS RefSeq. SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 AUTHORS Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V. TITLE The genomic constellation of a novel avian orthoreovirus strain associated with runting-stunting syndrome in broilers JOURNAL Virus Genes 42 (1), 82-89 (2011) PUBMED 21116842 REFERENCE 2 (bases 1 to 3907) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-FEB-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3907) AUTHORS Banyai,K. TITLE Direct Submission JOURNAL Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences, Veterinary Medical Research Institute, Hungaria krt. 21., Budapest, H-1143, HUNGARY COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to FR694193. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3907 /mol_type="genomic RNA" /db_xref="taxon:38170" /country="USA" /strain="AVS-B" /segment="L3" /organism="Avian orthoreovirus" gene 13..3870 /locus_tag="AOrVsL3_gpp1" /db_xref="GeneID:10220421" /gene="lambda-C" CDS 13..3870 /locus_tag="AOrVsL3_gpp1" /protein_id="YP_004226523.1" /gene="lambda-C" /db_xref="GeneID:10220421" /codon_start=1 /product="lambda-C protein" /translation="MAQIRGLRLSTTLSAPPSRKTLTSHTYDELISALKLTTKPWRPL KSRDRNSITAVQLLFPLNGYIEPMFILEKDMSYEDFESWLSPLLSALADQLLRRYPIA SHHGRLVNPLLSNAIVAAFLSNVPYLHALDHLFIIRGVVEDILDVGLSIQNHLWYDRS ALVTPAGQKFIQLSGYHFSSQDPCLFSKQLRCYGLVYYFLDMSDCISYCQRHLSNSTP LIHFDRPSNGVHCLVPSESTTPIAGSLPVSALSSILLESCIQQSLLNTRTPTGSPVVR QVEVLLPISSPFFERQNTLEYSLFALSNALVNGYQLIDLQPNHPDCATVAAILARLID FSKDITTIRPSPAQFNIYADSPLTYSGENANFIRRLPCSSGNPIGPVVVGKTVDRAIG WMPQFDPASSYNPDLAMDSLSKATTLPLRAKFSPFWSGPALFSFASCDRKNGIYDVSF MSQFPSLYFSDDDTASRSRFSSYRAVKDRSLLKDTANLLYISNLASSHDHRLIPDSKT MVYVGASGTHADNQPSVIKPLLNGSLPGVFKPLSVKQIGWEVTNGTICDIELPLATGT FFFVYSDVDQVQAGDSDLDASSRRFCSQLDMLVKLTYTGGSVVAKCNFPTNLVWRHLF TTVSPYFSSIHLLKPLIANNLELYVLLAEKLPVPEASFLPSADMVVFWRSQIQRYRTL RDSFAVVPSIDSTLSLEDDLTVSVLNFVDVTSLSSVEDQHALAAFSVITSLGSQKLSI HPYFDSYRTQLIGIITPHSRNVLDRLAYIPRVFPSTIDVQHRIMSSSDPEIFGFRSTY WTQLSFFYDNALMQMDFTEAKHWLDLGTGPEARPLSFLPSDLPVTLCDTRPFIFPSGC WATFTDFLSYDYLTTNVILSTGADVVSCVLTLGAACADANITLHEGVRQIVSQCVDAN VKTLFLQLNCPLPSAGDVPRDVLELVQTNSTYIFHSLGRIEPFIPYSALLEIVEDLCP GIVVEIKTMDPSLSWLNYAVHFNASVSSDDIVLAMRLSHFCPLFVFHLNRHSADFPDD ARVGSPFTVLLSNYEDTSSYEVTLDNVTIATITAGSLVGFSSGVQVASKDDQLTLTIN SASPGILSIIQVLPVRVSLGSCVIEAPDPSLSLIFPAKLDTSLSGTDLELFLSDWYDV ALFYIDEANSRLLPVSDTKYEIYRKDQTPGTRTINYIFDRSDVFFKIVLCDVSPSGVG RFIYRELPELSSPVWPEDVRTFLSLPFDSPMVIISPDGPVNYDGATVTPPTSWLTVDG STCVVDGRPSFFVPPGRYGLVRV" ORIGIN 1 gcttttccac ccatggctca gattagaggc cttcggttgt caacgacgct ctcagctcct 61 ccttcacgaa agactttgac ttcacataca tacgatgagc taatatctgc gttgaagcta 121 actaccaaac catggcgacc acttaagtct agggatcgga attccatcac cgcggtgcaa 181 ctattattcc ccctcaatgg atatatcgaa ccaatgttca tactggagaa agacatgagc 241 tatgaggatt ttgagtcttg gttatcacct ctactttcag ctttggcgga tcaattgtta 301 cggcgttacc ccattgcgtc tcaccatggg cgactggtta atccattgct ttccaatgcc 361 atcgtcgcgg cctttctatc aaatgttcct tacttgcatg cgctggatca tctttttata 421 atccgcggcg ttgttgaaga cattctggat gtcggacttt ccattcagaa tcatctgtgg 481 tatgatcgta gtgcccttgt gacgccagct ggtcagaagt tcatccaact atctggttat 541 catttctcct ctcaagatcc ttgtttgttt tcaaagcaac tgcgttgcta tgggctcgtc 601 tattattttc tagacatgtc ggactgcatt tcatattgtc agcgacatct ctccaattct 661 actcctctta ttcatttcga tcgcccatct aatggagtac attgcttggt cccttccgaa 721 tcaacaactc caattgctgg ctccctacct gtgtcagcac tcagttctat cttgcttgag 781 tcttgtattc aacaatctct tctgaatact cgaactccta ccgggagtcc ggttgtgagg 841 caagttgagg tgttactacc tatttcgtcc cctttcttcg agcgtcaaaa tactttggaa 901 tactccttat ttgcgctctc taacgcgctg gttaatggct accagctaat agacttacaa 961 ccgaatcacc cggattgcgc gactgtagcc gctattttag ccaggctgat tgatttttcg 1021 aaggacatta ctaccattcg cccatctccc gcgcaattta atatttatgc tgacagtcca 1081 ctgacttata gtggtgagaa cgctaacttt atccggcgct taccctgctc ttctgggaac 1141 cctattggtc cagtcgtcgt cggcaaaact gttgaccgcg ctatcggttg gatgcctcaa 1201 tttgatcccg cctcttctta caatcctgat ttggctatgg actccttatc taaagccacg 1261 acgctaccgc ttcgcgcaaa attttcgccc ttctggtctg gtccagcttt attctctttc 1321 gcttcttgcg atcggaagaa tggaatttac gatgtctctt tcatgtccca atttccatct 1381 ttgtatttca gtgatgatga cacagcctct agatcccggt tctcttccta tcgcgccgtc 1441 aaagacagat ctttgctgaa ggacacagct aacttactgt atatctcgaa cttggccagt 1501 tcgcacgatc accgccttat tccagactcg aagaccatgg tgtacgttgg ggcttcaggt 1561 acgcacgcgg ataatcagcc atctgtcatc aagcctttac taaatgggtc acttccgggc 1621 gtctttaaac ctctctctgt gaagcagatt ggatgggagg tgactaatgg tactatttgc 1681 gacattgagt taccactcgc gacaggcaca tttttcttcg tctacagcga tgtcgatcaa 1741 gttcaggctg gtgactccga tcttgatgcc tcttcccgcc gcttctgctc ccaattggac 1801 atgcttgtca aattgacata cacaggtgga tccgtcgttg ctaaatgtaa cttcccaact 1861 aatctcgttt ggcggcacct ctttacgacc gtttctccat acttttcttc tattcatctg 1921 ctgaaaccac taatcgctaa taatttggag ttgtatgttc tattggctga gaagttgcca 1981 gttcctgaag cgtccttcct cccttctgca gatatggtcg tcttctggag atcacagatt 2041 caacgttatc gaactttacg tgattctttt gctgtagttc cctcgattga ctctactctt 2101 agcttggaag atgatttaac tgtttctgtt ctgaattttg ttgatgtgac ttctctctca 2161 tctgtggaag atcaacatgc cctggctgcc ttttcagtaa ttacttcatt agggtctcag 2221 aaactgtcga ttcaccccta ttttgatagt taccgtactc agctgatcgg gataatcact 2281 ccccactctc gtaacgtatt ggataggctg gcgtacatac cgcgtgtgtt tccctctacc 2341 attgatgttc agcatcgcat catgtcgtca tctgaccctg agatcttcgg tttccgctct 2401 acctattgga ctcagctctc attcttttat gacaatgcat tgatgcagat ggatttcact 2461 gaagcgaaac attggcttga cttagggaca ggacctgaag ctaggccttt atctttcttg 2521 ccctccgatc ttcccgtcac cctgtgtgat actcgacctt tcatatttcc ttctggttgc 2581 tgggccacgt tcacagattt tcttagttac gattacctaa ccacaaatgt tattctctcg 2641 accggagctg atgttgtatc ttgcgttctc actttaggtg ctgcttgtgc cgacgcgaac 2701 ataacgcttc atgagggagt tcgccagata gtttcacaat gtgtggatgc caatgttaag 2761 acgctcttct tacagctcaa ttgtcctttg ccttctgccg gtgatgtgcc ccgtgacgtt 2821 ttggaactgg tgcagactaa ctcgacttac attttccatt cgttgggccg cattgaacct 2881 tttattcctt actctgctct tcttgagatc gtggaggact tatgcccggg tatcgttgtg 2941 gagattaaga cgatggatcc atctctttcg tggctcaatt acgctgtaca ttttaatgca 3001 tctgtttctt ccgatgatat agtgttggct atgcggttgt ctcacttctg tcccctattc 3061 gtgtttcact tgaaccgtca ttcagctgat tttccagacg atgcgcgcgt aggctctcct 3121 tttacggttt tactgtccaa ttatgaggac acgagctctt atgaggttac tttagataac 3181 gtcacgattg ctacaatcac tgctggatct cttgtgggct tttcatcggg tgtccaggtc 3241 gcttcaaaag atgatcaact cactttaacc ataaactctg ccagtcctgg aattttgtct 3301 attattcagg tgctcccggt gcgtgtctct cttggcagct gtgtgataga ggccccagac 3361 ccttcactgt ccttgatttt cccggccaaa ctggacacat ctctatcggg cacagatctg 3421 gaattgttct tatctgattg gtatgatgtc gctttattct atattgatga agccaactct 3481 cgtttgttgc cggtgtcgga taccaagtac gaaatttaca gaaaagatca aactccaggt 3541 actaggacga ttaattatat cttcgatcgc tcagatgtct tcttcaaaat agtgttgtgt 3601 gacgtttctc catcaggagt tggccgattc atttatcgcg agctacccga gttaagttca 3661 cccgtgtggc ctgaagacgt tcgcaccttt ctatcgctac ctttcgactc tccaatggtc 3721 attatctctc ctgatggtcc tgtgaactac gatggtgcga ctgtgacgcc ccccacgtct 3781 tggttgacag ttgacggtag tacatgcgtt gtcgatggtc ggccttcatt ctttgtgcct 3841 cccggtagat atggcctggt gagagtctag acgaccgcgg gcctccagta gaagggtgtt 3901 actcatc //