LOCUS       NC_015131               1996 bp    RNA     linear   VRL 22-FEB-2011
DEFINITION  Avian orthoreovirus segment M3, complete genome.
ACCESSION   NC_015131
VERSION     NC_015131.1
DBSOURCE    BioProject accession PRJNA62875
KEYWORDS    RefSeq.
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; dsRNA viruses; Reoviridae; Spinareovirinae;
            Orthoreovirus.
REFERENCE   1
  AUTHORS   Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V.
  TITLE     The genomic constellation of a novel avian orthoreovirus strain
            associated with runting-stunting syndrome in broilers
  JOURNAL   Virus Genes 42 (1), 82-89 (2011)
   PUBMED   21116842
REFERENCE   2  (bases 1 to 1996)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2011) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1996)
  AUTHORS   Banyai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences,
            Veterinary Medical Research Institute, Hungaria krt. 21.,
            Budapest, H-1143, HUNGARY
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to FR694196.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1996
                     /mol_type="genomic RNA"
                     /db_xref="taxon:38170"
                     /country="USA"
                     /strain="AVS-B"
                     /segment="M3"
                     /organism="Avian orthoreovirus"
     gene            25..1932
                     /locus_tag="AOrVsM3_gpp1"
                     /db_xref="GeneID:10220427"
                     /gene="mu-NS"
     CDS             25..1932
                     /locus_tag="AOrVsM3_gpp1"
                     /protein_id="YP_004226526.1"
                     /gene="mu-NS"
                     /db_xref="GeneID:10220427"
                     /codon_start=1
                     /product="mu-NS protein"
                     /translation="MASTKWGDKPMSLSMSHDGSSIRSAASQFLSVPLSHSTPIPPQR
                     KTVLLKFMIGDDLVTVQGALAPFDEYWYDNQPLLAQAVEMLASEDRLRQFEHYEKFLL
                     KKGHQIAEIMNRLRLFFTDVLKVKMEAEALPALAQYLMVGTLEAVSTAHSPDACVPVT
                     SKVVTKQQTIAKSPGRLDEEEYNVIRSRFLTHEVFDLTSDLPGVQPFMDMYYATVPRA
                     DSTGWCVYRRKGLLIHSPDEQFSDLTIFSTRLTASHELQLVAGDVVVACFDLMDVSDI
                     APSHHASVQEERTLGTSKYSNITANDHPLVFFSPSALRWAIDHACTDSLVSTRNIRVC
                     VGIDPLVTRWTRDGVQEAAILMDDKLPSAGRARMALRTLLLARRSPMPSFLLGALKQS
                     GGQLLEHYRCDAANRYGSPTVPMSHPPPCSKCPELKEQITKLSSSPTPKIDSTTGPAA
                     LLSKISDLQRANRELSLKLVDMQPAREDHLLSYLNEHVCVNARDHEKGLLSRCNVSNE
                     SISSILDQRMKNRERFETRLRHEASAEWEPRVEALNQELAKARVEQQDMMTQSLQYLN
                     ERDELLHEVDELKRELTTLRAANVRLNADNHRMSRATRVGDAFVSDIEPLPSGIPGES
                     KPSMEELVDDL"
ORIGIN      
        1 gctttttgag tcctagcgtg gatcatggcg tcaaccaagt ggggagacaa gccgatgtcg
       61 ctctcaatgt ctcacgatgg atcatctatc cgcagtgctg cctcacagtt tttgtcggtc
      121 cctctgtctc actcaacgcc tatcccacct caacggaaga ccgtgctgtt gaaatttatg
      181 attggcgatg atctggttac cgttcagggt gccctcgccc cgtttgatga gtattggtac
      241 gataaccaac ctctgctagc tcaggctgtt gagatgcttg cttctgaaga tcgtttacgt
      301 caattcgagc attatgagaa atttctactc aagaaaggtc atcagatagc tgagattatg
      361 aacaggttac gcctcttttt cacagacgtt cttaaagtta agatggaagc tgaggcttta
      421 cctgctttag ctcaatatct aatggttgga accttagagg ctgtttctac tgctcattca
      481 cctgatgctt gtgttccagt tacctcaaag gtcgtgacta agcagcagac tattgctaaa
      541 tctcctggcc gtctcgatga ggaggaatac aacgttattc gatcgcgttt cctgacgcac
      601 gaggtttttg atctgacgtc cgacttaccc ggagtgcaac ctttcatgga tatgtactac
      661 gctaccgtcc ctcgcgccga ttcgacagga tggtgtgtgt accgtcgcaa gggcttactc
      721 attcactctc ctgatgagca attctcagat ctgactatct tctctacacg tcttacggct
      781 tcgcatgagt tgcagctcgt ggctggagat gtcgtcgtgg cgtgctttga tctcatggac
      841 gtttctgaca tcgcgccatc tcatcatgca tcagtgcaag aggaacgtac tctcgggacc
      901 agtaaatatt cgaatataac ggctaacgat catcctctgg tattcttctc acccagtgcg
      961 cttcgttggg cgattgacca tgcttgcacc gattccttag tttctactcg aaatatccgt
     1021 gtttgtgttg gtatcgatcc cctggtaact cgatggaccc gagacggggt acaagaggcc
     1081 gctatcctca tggatgataa actaccatca gcaggccgtg cacgtatggc tttgcggaca
     1141 ttgcttctcg ctagacgttc accaatgcca tctttcttac tgggggcctt aaagcagtcg
     1201 ggcggtcagt tactggagca ctatcgatgt gacgcggcta acagatacgg atctcctacc
     1261 gtacccatgt ctcatccacc accgtgttca aagtgtcctg aactgaaaga acaaattacc
     1321 aaactctcgt cctcgcctac acccaaaatc gactctacca ctggccccgc tgcactgttg
     1381 tcaaaaattt ctgacctcca gcgtgctaat agggaactgt cactgaaact ggtcgatatg
     1441 caacctgctc gggaggacca cctgctgtct tatctcaatg aacacgtgtg cgtaaatgct
     1501 agagatcatg agaagggtct gctctctcgc tgcaacgtat ctaatgaatc gatctcctct
     1561 atccttgacc agcgtatgaa gaatcgggaa cggtttgaga ctcggctgcg gcatgaggcc
     1621 agtgctgaat gggaacctcg tgtggaagcg ctaaaccaag agttggccaa agctcgtgtg
     1681 gaacagcagg acatgatgac tcagtctcta cagtacttaa acgagcgtga cgaattactc
     1741 cacgaagtgg acgagctcaa acgtgaactg accaccctgc gcgccgctaa tgtgcgcttg
     1801 aacgctgaca atcatcggat gagccgtgca actcgtgttg gagacgcttt cgtcagcgac
     1861 atcgagcctc tgccctctgg catacctggt gaatcgaaac catctatgga agaattggta
     1921 gatgatctgt gagctttgac ttgtgactcg acttctctct gattccatgt acccacggcg
     1981 gactcggtta ttcatc
//