LOCUS       KR997916                1325 bp    RNA     linear   VRL 24-NOV-2015
DEFINITION  Avian orthoreovirus strain D1246 segment S2 sigma A gene, complete
            cds.
ACCESSION   KR997916
VERSION     KR997916.1
KEYWORDS    .
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; dsRNA viruses; Reoviridae; Spinareovirinae;
            Orthoreovirus.
REFERENCE   1  (bases 1 to 1325)
  AUTHORS   Dandar,E., Feher,E., Balint,A., Kisfali,P., Melegh,B., Mato,T.,
            Kecskemeti,S., Palya,V., Banyai,K. and Farkas,S.L.
  TITLE     Genome Sequences of Three Turkey Orthoreovirus Strains Isolated in
            Hungary
  JOURNAL   Genome Announc 3 (6), e01333-15 (2015)
   PUBMED   26586882
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1325)
  AUTHORS   Feher,E., Dandar,E. and Banyai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2015) Institute for Veterinary Medical Research,
            Centre for Agricultural Research, Hungarian Academy of Sciences,
            Hungaria krt 21., Budapest, Pest H-1143, Hungary
COMMENT     GenBank Accession Numbers KR997909-KR997918 represent sequences
            from the 10 segments of Avian orthoreovirus D1246.
            ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench
            v. 7,0 Sequencing Technology :: IonTorrent; Sanger dideoxy
            sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1325
                     /mol_type="genomic RNA"
                     /country="Hungary"
                     /isolation_source="feces"
                     /segment="S2"
                     /collection_date="2009"
                     /host="turkey"
                     /db_xref="taxon:38170"
                     /strain="D1246"
                     /organism="Avian orthoreovirus"
     CDS             17..1267
                     /codon_start=1
                     /protein_id="ALG03383.1"
                     /translation="MARAVYDFFSTPFGNRGLATNRTQLSSLLSSSNSPWQRFLSSIT
                     PLTAPGIVSTPEAPYPGSLLYQESMLHSATVPGVLGNRDAWRTLNVFGLSWTDEGLSG
                     LVAAQDPPPAAPYQPASAQWSDLLNYPRWANRRRELQAKYPLLLRSTLLSAMRAGPVL
                     YVETWPNMISGRLADWFMSQYGNNFVDMCARLTQSCSNMPVEPDGNYDQQMRALISLW
                     LLSYIGIVNQTNTISGFYFSSKTRGQALDSWTLFYTTNTNRAQITQRHFAYVCARSPD
                     WNVDKSWIAAANLTAIVMACRQPPMFANQGVINQAQNRPGFSMNGGTPVHELNLLTTA
                     QECIRQWVVAGLVSAAKGQALTQEANDFSNLIQADLGQIKAQDDALYNQQPGYARRIK
                     PFVNGDWTPGMTAQALNLLATFTV"
                     /product="sigma A"
                     /note="core clamp"
     misc_feature    119..1234
                     /db_xref="CDD:281127"
                     /note="Reoviral Sigma1/Sigma2 family; Region: Sigma_1_2;
                     pfam03084"
ORIGIN      
        1 gcttttttct cccacgatgg cgcgtgccgt atacgacttc ttttctacgc ctttcgggaa
       61 tcgtggtcta gcgacgaacc gtactcaact atcatcacta ctatcaagct cgaattcccc
      121 atggcaacga tttctgtcat caataactcc actgacggcg ccaggtatcg tttcaacacc
      181 tgaggcaccc tatccaggct cgttgctgta ccaagaatct atgctccaca gtgccactgt
      241 ccctggggta ctcggtaatc gtgatgcttg gcgtacactt aacgtcttcg gactttcatg
      301 gaccgatgaa ggactgtcag gcttggtagc tgcccaagat cctcctcctg ctgctccgta
      361 tcagccagct tccgctcagt ggtcggatct cctcaactac cctaggtggg cgaacagacg
      421 tcgtgagcta caagctaaat acccgcttct gcttcgatcc acgctgcttt ccgccatgcg
      481 agctggtcct gttctctatg ttgagacgtg gccaaatatg atttcaggac gactagctga
      541 ctggttcatg tcccaatatg gcaacaattt tgttgacatg tgtgccaggt tgacgcagtc
      601 ttgttcgaac atgcctgttg agcccgatgg aaattatgat cagcagatgc gtgctttgat
      661 cagtttgtgg cttctgtcct atattgggat agtcaaccag accaacacca tcagcggttt
      721 ctacttctcg tcgaagactc gtggtcaagc gttggacagt tggaccctgt tctataccac
      781 aaacactaac cgtgcccaaa ttacccagag gcacttcgct tacgtatgtg cacgatctcc
      841 tgactggaac gtggataagt cgtggatcgc tgcggcgaac ttaaccgcta tcgtcatggc
      901 ttgccgccag ccgccgatgt tcgccaatca aggcgttatc aatcaagcgc agaaccgacc
      961 tggcttttcc atgaatgggg ggacgcccgt ccatgagctc aacttactga ctactgcgca
     1021 ggaatgcatc cggcagtggg tggtagccgg tttggtgtca gcggcgaagg ggcaagcact
     1081 gacgcaggag gccaacgact tttcaaacct catccaggcg gatttgggtc agatcaaagc
     1141 gcaggatgac gctctgtaca atcagcagcc aggatacgcg agaagaataa aacccttcgt
     1201 taatggtgac tggacaccag gtatgaccgc gcaagccttg aacctcctag ccacttttac
     1261 cgtctaggcg tagggtcgta cgctgcccga gtccagccct ccgncagcac gtgnntgtat
     1321 tcatc
//