LOCUS       KU169291                2283 bp    RNA     linear   VRL 02-MAY-2016
DEFINITION  Avian orthoreovirus strain Reo/PA/Layer/27614/13 segment M1 Mu-A
            gene, complete cds.
ACCESSION   KU169291
VERSION     KU169291.1
KEYWORDS    .
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; dsRNA viruses; Reoviridae; Spinareovirinae;
            Orthoreovirus.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Tang,Y. and Lu,H.
  TITLE     RNA deep-sequencing analyses for the detection of natural
            co-infections of avian orthoreovirus and fowl adenovirus in layer
            chickens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Lu,H. and Tang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2015) Veterinary and Biomedical Sciences, The
            Pennsylvania State University, 101 Wiley Lab / Avian Virology,
            University Park, PA 16802, USA
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench
            v. V7.5.2 Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /mol_type="genomic RNA"
                     /country="USA"
                     /segment="M1"
                     /collection_date="09-Jan-2014"
                     /host="layer chicken"
                     /db_xref="taxon:38170"
                     /strain="Reo/PA/Layer/27614/13"
                     /organism="Avian orthoreovirus"
     CDS             13..2211
                     /codon_start=1
                     /protein_id="ANB27693.1"
                     /translation="MAYLATPVLGVGSRITALDRTIDAITLKPRIDLQDVYTIDPTLT
                     LRQIELISSGTSMDDIARGLLHRDWRRQSTIVLLPSRRSLLEYLLSNPSVCPDGLDRP
                     RLKGFQKRPNDFRVQDFFSPLITDSTSIATYSRWLNAHPIVYSTTHKVAGARVRLFGP
                     AKLYILSPDVLRELSILKSTDRILVVPTARVYVGCFPSASTSNCVLTARERWNAPDVH
                     PVVKAIQLAYDHQYRVTARYLSDPLISALLLGNRSVKTLKVQPVEARAARSVGIRVQA
                     MTPPRGINTSIIQVVDLRLQCRHSLIPTERPFPLTFIGLPSCLLQHLDLTLSDDWVPI
                     RDHTGMFEMWFMILTLTCDKILDGRGNAVFLIPSSTNALSVNYVQLTSTASPRPQSLA
                     ANASGRIDSIGLCMPKGSFKSTMIKFLTGLEICGTRVMYPDVVMDSDDVGDALDPTFE
                     TALHDALLALDPPFDVDKLASPTDLVNQEYVASHMYPTFLRLVNELLTPKASELYSER
                     SVEFRSLTYAHADSEFLNACWTARLMRCFINYHEEQNILLRPGRVGGVLFQVALSRCY
                     KMFATSTPASPLSLFLKSLFVPWIESAPLLAKLTPNESSRVLAWYIPSSYWNDNGWCT
                     CDTHRHVTFSFIRGLPADLSVLDLFDWSRFRATINVDASLVELGADIRAVKVSVHWTS
                     QKPTVDVFDNRALFTPFQHYHLSLHCNCAPGRSFFAKNMKLYLSTVGGEH"
                     /product="Mu-A"
                     /note="minor core protein"
ORIGIN      
        1 gcttttctcg acatggccta tctagccaca cctgtgctag gagtcggttc tcgcattacc
       61 gccttagatc gtactattga tgctattacg ttgaaacctc gaatcgacct ccaagatgtg
      121 tatacaattg atcccacact aactctgcgt cagatagagt taatctcttc ggggacttca
      181 atggacgaca ttgctcgtgg attgttacat cgagactggc gtcgtcaatc caccattgtc
      241 ttgctccctt ctcgtcgctc tctccttgag tacctattgt ctaatccttc tgtctgtccg
      301 gatggcttag atcgtcctcg ccttaaaggg ttccaaaaac gcccaaatga ttttcgtgtc
      361 caagacttct tctctccact gattacggac tcaacatcaa ttgctacgta ttctcggtgg
      421 cttaatgctc atcctattgt gtactctacc actcacaaag tcgctggtgc tcgggtacgt
      481 ctctttggac ctgctaagtt atacattctg tcacccgatg ttctccgtga attatccatt
      541 ttgaaatcca ctgatcgcat cttagttgta cccacggcgc gcgtgtatgt cggttgtttc
      601 cccagtgctt ctactagtaa ttgcgtactc actgcgcgtg aacgctggaa tgcccctgat
      661 gttcaccctg tcgtaaaggc aatccaatta gcttatgacc atcaatatcg tgtcactgcc
      721 cgctatctct cagaccctct tatctcggct cttcttcttg ggaaccggtc ggtgaagacg
      781 ttgaaggtac agccagtgga agctagagca gcacggtcgg ttggcattcg cgttcaagcg
      841 atgacacctc ctcgtggtat taatacctca attatccagg tcgttgatct caggttgcaa
      901 tgccggcatt cccttattcc caccgaaagg ccattcccgc taacgttcat cggcctccca
      961 tcgtgtctgc ttcaacattt ggatttaacg ttatccgatg attgggtgcc cattcgtgat
     1021 catacaggca tgtttgaaat gtggtttatg attcttacgc tcacttgtga taagatcctt
     1081 gacggacggg gaaatgccgt tttccttatt cccagctcta ctaatgcgtt gtcagttaac
     1141 tatgtacagc tcacgtcgac tgcatctcca cgtcctcaat cgttggcggc gaacgcatct
     1201 gggcggatag attccattgg gttgtgcatg cctaaaggat ctttcaagtc aactatgatt
     1261 aaatttctca ctggattaga aatctgcggc actcgagtga tgtatccaga cgtcgtgatg
     1321 gatagtgatg atgtaggcga tgctctggat cctacttttg aaaccgcgct acacgatgca
     1381 ttgctggctc ttgatccacc ttttgacgtt gacaaattag ctagccccac cgatttagtt
     1441 aaccaggaat atgtcgcgtc tcacatgtac ccaacattct tacgactcgt caatgagttg
     1501 ctaacgccta aagcttcaga attgtactca gagcgtagcg ttgagttccg atcgcttacc
     1561 tacgcgcatg ctgattctga atttcttaac gcatgttgga ccgctcgctt gatgcgatgt
     1621 tttatcaact atcatgaaga gcaaaacatc ctgcttcgtc ctggacgcgt tggcggtgtg
     1681 ttatttcaag tcgcgttgag tcgctgctat aagatgttcg ctacttccac tcctgcctcc
     1741 cctttatcac tgttcctcaa gtcgttgttc gttccttgga ttgaatctgc tccactacta
     1801 gcgaaattga ctccaaacga gtcctctcgt gtgttagcgt ggtacatacc ttcttcgtat
     1861 tggaatgaca acggttggtg cacttgtgac actcatcgtc atgttacctt ctctttcatt
     1921 cgtggtcttc cggcggacct gtcggtgtta gatctatttg attggtctcg gtttcgcgca
     1981 actataaacg tagatgcgtc cctagtagag ctaggcgctg atattcgtgc ggttaaggtg
     2041 tcagttcatt ggacatctca gaagcccact gtggacgtct ttgataatcg cgcgcttttc
     2101 actccctttc agcattacca cttaagcctt cactgtaatt gtgcgcctgg tcgctctttc
     2161 ttcgcgaaaa atatgaaact gtatctgtcg acggttggag gcgagcactg acgggccgtg
     2221 gggcggtgac acccagggag ggtatgctgg taaccctggg ttagtcgtct tgagatactc
     2281 atc
//