LOCUS       KU169292                2158 bp    RNA     linear   VRL 02-MAY-2016
DEFINITION  Avian orthoreovirus strain Reo/PA/Layer/27614/13 segment M2 Mu-B
            gene, complete cds.
ACCESSION   KU169292
VERSION     KU169292.1
KEYWORDS    .
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; dsRNA viruses; Reoviridae; Spinareovirinae;
            Orthoreovirus.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Tang,Y. and Lu,H.
  TITLE     RNA deep-sequencing analyses for the detection of natural
            co-infections of avian orthoreovirus and fowl adenovirus in layer
            chickens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Lu,H. and Tang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2015) Veterinary and Biomedical Sciences, The
            Pennsylvania State University, 101 Wiley Lab / Avian Virology,
            University Park, PA 16802, USA
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench
            v. V7.5.2 Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /mol_type="genomic RNA"
                     /country="USA"
                     /segment="M2"
                     /collection_date="09-Jan-2014"
                     /host="layer chicken"
                     /db_xref="taxon:38170"
                     /strain="Reo/PA/Layer/27614/13"
                     /organism="Avian orthoreovirus"
     CDS             30..2060
                     /codon_start=1
                     /protein_id="ANB27694.1"
                     /translation="MGNATSVVQNFNIQGDGNHFAPSAETTSSAVPSLSLNPGLLNPG
                     GKAWVLIDPSLNASDPSSLRLMTLADLLTLPPSATSNSTGFLPTSGMYAIATKETLSV
                     VTEHAISQFDKLQMACELDRDYLDARGVSPESVNIHSYIAYVDCFVGVSARQAASNFK
                     QHVPVITKSRMTQFMTSAQNMLQVLGPWERDVRELLTILPTSTTAGKITCDMKSVVAF
                     IDDQLSDTSLCRLYPDCAAASVARRNGGIRWKTPDTDEAPSLATNDVAASTMGTLANT
                     TPLAEKSNSGEESMRLVSDVGVDIVCSRSPISSSVWSRTVEPKSYNIRTLRVEEALWL
                     RECQATTGFDVQYTLPDQTTHKHFWLQKGSVVINLEQTGSMMFDVNIAGKDYKKGTFN
                     PDNRKLVLLVMQSKIPFESWTVASQITGIAQVAEVTVHAADSSTPNQKIIGETSLSYL
                     FERETVTTSNTEINTYLLCTWQLDDEQSNDANAWPDAWDGITTLTPLTSGTVTIKGTS
                     VDSVIPSDLVGAYTPEALAAALPNDAGLILANKATKLADAIKKEDDSVIDESSPFSTP
                     IQGVLAVQQLDTVGTRGTRAFQPPSILKRIASRALHMFLGDPKSILKQATPVLRDPDV
                     WTGFVQGVRDGIRTKSLSAGIRSVYNNVTATQSVQTWKQGFLTKIQTLFKPS"
                     /product="Mu-B"
                     /note="major virion structural protein"
ORIGIN      
        1 gctttttcag tgccagtctt tctcacaaga tgggtaacgc gacgtctgtt gtgcagaact
       61 tcaatatcca gggtgatggc aatcattttg ctccatctgc tgagactact tcatccgccg
      121 taccgtcatt atctctgaac cccggactgt taaatccagg tggtaaggcg tgggtcttga
      181 ttgacccctc tctgaatgct tccgatcctt catcactacg tctgatgacc ttggctgatc
      241 tattaacact tcctccatcc gctactagta attctaccgg gttcctccca acttctggta
      301 tgtatgccat tgctactaaa gagacgttga gtgtagttac tgagcacgca atctcccagt
      361 ttgataagtt gcagatggct tgtgagttgg accgcgacta tctggatgcc cgaggtgttt
      421 ctcctgagtc tgtgaacatt catagttata tagcttatgt tgactgcttc gtgggtgtat
      481 ccgcaaggca agctgcgtca aactttaagc agcacgtgcc agttataacc aaatcccgta
      541 tgacacaatt catgacctcc gcgcagaata tgttgcaggt gctcggacct tgggaacgcg
      601 atgttcgtga gttgctcact attcttccca cttctaccac cgctggtaaa atcacatgcg
      661 acatgaagtc tgtcgtcgct tttattgatg atcagctttc tgataccagt ttgtgccgtc
      721 tgtaccctga ctgcgctgct gcgtcggtgg ctaggcgtaa tggtggcatt cgatggaaga
      781 cacctgatac tgacgaggct ccttcgcttg caactaacga tgtggctgcc tcaactatgg
      841 gcacgcttgc caatactaca ccactggctg agaagtcgaa ctcgggcgag gagtcaatgc
      901 gcttagtgag tgacgttggt gtggacatcg tttgttctcg tagccctatc agttcttcag
      961 tttggtcacg cacggttgaa cccaaatcgt acaatattag aacccttcgt gtagaagagg
     1021 cgctttggtt acgtgagtgc caggcgacta ctggatttga tgtacagtat acactgcccg
     1081 accagactac acataagcat ttctggcttc agaaggggtc agttgtcata aatctcgagc
     1141 aaacgggtag tatgatgttt gacgtgaaca tagcgggtaa agattataag aagggcacct
     1201 tcaatcctga taatcgtaag ttggtccttt tggttatgca gtcaaagatc cctttcgagt
     1261 cttggactgt cgcttctcaa attactggta tcgctcaagt ggctgaggtc actgtgcacg
     1321 ctgctgacag ttcgactcct aaccaaaaga tcatcggtga gacttctctg tcttatttgt
     1381 ttgagagaga gacagtgacc acgtcaaaca ctgaaatcaa tacatatctg ttgtgcactt
     1441 ggcaacttga cgatgaacag agcaatgatg caaacgcctg gccagacgca tgggatggga
     1501 tcacaacatt gaccccgctt acttctggta ctgtgaccat caaggggact tcggtggatt
     1561 cagtcatacc gtctgatttg gttggcgcct acacacctga ggctttggct gctgcgctcc
     1621 ctaacgacgc tgggttaatt ttggctaata aggccactaa attggctgac gctatcaaga
     1681 aagaggatga ttctgtgatt gatgagtctt ctccattcag tactcccatt caaggggttc
     1741 tggccgttca acaacttgac accgtgggga cgcgcggtac gcgtgcattc cagcctccgt
     1801 ctattctgaa acgcatcgcc tcacgagctc ttcacatgtt tcttggtgat ccaaagtcca
     1861 ttctgaagca agcaacgcct gtattgaggg atcctgacgt ttggaccggt ttcgttcagg
     1921 gcgttagaga cggcatccgg actaagtcac tatccgctgg aatacgttct gtgtataaca
     1981 atgtcaccgc cacgcaatct gtgcaaacgt ggaagcaggg gtttctgacg aaaatacaga
     2041 cgttgttcaa gccatcgtga ggtgctaagg cctctctctg cggcgggtcg gtgggcacgt
     2101 cgtagtgacg ctgaatgcac ggggaggtga cgctccctgg attggcacgt tattcatc
//