LOCUS       KU169297                1192 bp    RNA     linear   VRL 02-MAY-2016
DEFINITION  Avian orthoreovirus strain Reo/PA/Layer/27614/13 segment S4
            sigma-NS gene, complete cds.
ACCESSION   KU169297
VERSION     KU169297.1
KEYWORDS    .
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; dsRNA viruses; Reoviridae; Spinareovirinae;
            Orthoreovirus.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Tang,Y. and Lu,H.
  TITLE     RNA deep-sequencing analyses for the detection of natural
            co-infections of avian orthoreovirus and fowl adenovirus in layer
            chickens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Lu,H. and Tang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2015) Veterinary and Biomedical Sciences, The
            Pennsylvania State University, 101 Wiley Lab / Avian Virology,
            University Park, PA 16802, USA
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench
            v. V7.5.2 Sequencing Technology :: Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /mol_type="genomic RNA"
                     /country="USA"
                     /segment="S4"
                     /collection_date="09-Jan-2014"
                     /host="layer chicken"
                     /db_xref="taxon:38170"
                     /strain="Reo/PA/Layer/27614/13"
                     /organism="Avian orthoreovirus"
     CDS             24..1127
                     /codon_start=1
                     /protein_id="ANB27699.1"
                     /translation="MDNTVRVGVSRNTSGAAGQTVFRNYYLLRCNISADGRNATKAVQ
                     SHFPFLSRAVRCLSPLAAHCADRTLRRDNVKQILTRELPFPSDLINYAHHVNSSSLTT
                     SQGVEAARLVAQVYGEQLSFDHIYPTGSATYCPGAIANAISRIMAGFVPHEGDNFTPD
                     GTIDYLAADLVAYKFVLPYMLDIVDGRPQIVLPSHTVEEMLSNTSLLNSIDASFGIES
                     KSDQRMTRDAAEMSSRSLNELEDHEQRGRMPWKIMAAMFAAQLKIELDALADERVESQ
                     ANAHVTSFGSRLFNQMSAFVPIDRELMELALLIKEQGFAMNPGQVASKWSLIRRSSPT
                     RPLSGARLEIRNGNWTIREGDQTLLSVSPARMA"
                     /product="sigma-NS"
                     /note="polyG polymerase"
ORIGIN      
        1 gctttttgag tcctcgtgca gccatggaca acaccgtgcg tgttggagtt tcccgcaaca
       61 catccggcgc agctggtcag actgtcttta gaaactacta cctactacga tgcaatatct
      121 cggctgacgg tcgtaacgca acaaaagctg tgcaatctca ctttccattc ctctctcgtg
      181 ctgtccgatg cttatctcct ctagctgctc attgtgctga taggaccctc cgtcgtgata
      241 acgtgaagca gattcttact cgtgagctac catttccatc ggatttgatc aattacgcgc
      301 accatgtgaa ttcatcctct ctcactactt ctcagggtgt cgaggcagcg cgtctggtgg
      361 cccaagttta tggggaacaa ctgtcattcg atcacatcta tcccactggt tccgcaacct
      421 actgccctgg cgcgattgcg aatgcgattt ctcgtatcat ggctggcttc gtaccccatg
      481 aaggtgataa ctttacccca gacggcacta ttgactatct cgctgcagac ctggtcgcgt
      541 acaaattcgt gcttccttac atgctagaca tcgtggacgg acgtccgcag attgttcttc
      601 catcgcacac tgttgaggag atgctgtcca acacgagctt gcttaattca atcgacgctt
      661 catttggtat cgaatctaag agcgatcagc gcatgactcg tgatgcggct gaaatgagtt
      721 ctcgttcact taatgagctt gaggatcacg agcagagggg tcgaatgccg tggaagatca
      781 tggcggcgat gtttgcggcg caattgaaga tagagttgga tgccctagct gatgagcgtg
      841 ttgagtctca agctaacgct cacgtgacgt cttttgggtc ccgtctgttt aatcagatgt
      901 ctgcttttgt ccctattgat cgtgagttaa tggagctggc tctactcatt aaggaacaag
      961 gttttgcaat gaatccaggg caagtcgcat ctaaatggtc gctgatacga cgatctagtc
     1021 caactcgccc actgtcaggc gcacgccttg agatcagaaa tggcaactgg acgatccgtg
     1081 aaggtgatca gacacttctg tctgtctctc cagctaggat ggcgtagacg ggacccatgg
     1141 tgcgggtgag gggccgccac accctctgcc gcgacttgga ctcttgttca tc
//