LOCUS       KT954551                1192 bp    RNA     linear   VRL 11-APR-2017
DEFINITION  Avian orthoreovirus strain Reo/PA/Pheasant/13649/14 polyG pol
            gene, complete cds.
ACCESSION   KT954551
VERSION     KT954551.1
KEYWORDS    .
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; dsRNA viruses; Reoviridae; Spinareovirinae;
            Orthoreovirus.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Tang,Y. and Lu,H.
  TITLE     Isolation and genetic characterization of a novel pheasant
            orthoreovirus with divergent M1, M3 and S2 segments using
            next-generation sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Lu,H. and Tang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2015) Veterinary and Biomedical Sciences, The
            Pennsylvania State University, 101 Wiley Lab / Avian Virology,
            University Park, PA 16802, USA
COMMENT     ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench
            v. V7.5.2 Coverage :: 1678 Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /mol_type="genomic RNA"
                     /country="USA"
                     /segment="S4"
                     /collection_date="07-Jun-2014"
                     /host="pheasant"
                     /db_xref="taxon:38170"
                     /strain="Reo/PA/Pheasant/13649/14"
                     /organism="Avian orthoreovirus"
     CDS             24..1127
                     /codon_start=1
                     /protein_id="AMW77373.1"
                     /translation="MDNTVRVGVSRNTSGAAGQTVFRNYYLLRCNISADGRNATKAVQ
                     SHFPFLSRAVRCLSPLAAHCADRTLRRDNVKQILTRELPFPSDLINYAHHVNSSSLTT
                     SQGVEAARLVAQVYGEQLSFDHIYPTGSATYCPGAIANAISRIMAGFVPHEGDNFTPD
                     GAIDYLAADLVAYKFVLPYMLDIVDGRPQIVLPSHTVEEMLSNTSLLNSIDASFGIES
                     KSDQRMTRDAAELSSRSLNELEDHEQRGRMPWKIMTAMFAAQLKVELDALADERVESQ
                     ANAHVTSFGSRLFNQMSAFVPIDRELMELALLIKEQGFAMNPGQIASKWSLIRRSGPT
                     RPLSGARLEIRNGNWTIREGDQTLLSVSPARMA"
                     /product="polyG pol"
                     /note="sigma-NS"
ORIGIN      
        1 gctttttgag tccttgtgca gccatggaca acaccgtgcg tgttggagtt tcccgcaaca
       61 catccggcgc agctggtcag actgttttca gaaactatta cttactgcga tgcaatatct
      121 cagctgacgg tcgcaatgca acaaaagctg tgcaatccca ctttccattc ctttctcgtg
      181 ctgtccggtg cttatctcct ctagctgctc actgtgctga taggactctc cgtcgtgaca
      241 acgtgaagca gattctgact cgtgagctgc catttccatc tgatttgatt aattacgctc
      301 accacgtgaa ctcatcttct cttactactt ctcaaggcgt cgaggcagcg cgtctagtag
      361 cccaagttta tggggagcaa ctgtcgtttg accacatcta tcccaccggt tccgcaacat
      421 actgccctgg agcgatcgcg aatgcgattt cccgtattat ggctggtttc gtgcctcatg
      481 aaggcgataa ctttactccg gatggtgcta ttgactatct tgctgcagac ctggtcgcgt
      541 ataagttcgt gcttccctac atgctagaca ttgtggacgg acgtccacag attgttcttc
      601 catcgcacac tgttgaagaa atgctgtcta acacgagctt gcttaattct attgatgctt
      661 cgtttggtat tgagtctaag agtgaccaac gcatgacccg tgatgcggca gagctgagct
      721 ctcgttcact caatgagctt gaagatcacg agcagagggg tcgaatgcct tggaaaatca
      781 tgacggcgat gttcgcggcg caactaaagg tggagctgga tgccctagct gatgaacgtg
      841 ttgagtctca ggctaatgct catgtgacat cttttgggtc ccgcctgttc aaccagatgt
      901 ctgctttcgt cccaattgat cgtgagttga tggaactggc tctactcatt aaagaacaag
      961 gttttgcgat gaatccaggg caaatcgcgt ctaaatggtc gctgatacga cgatccggtc
     1021 ccactcgccc actgtcaggt gcacgccttg agattaggaa tggcaactgg acgattcgtg
     1081 aaggtgacca gacgcttctg tctgtctctc cagctaggat ggcgtaaacg ggacccatgg
     1141 tgcgggtgag gggccgccac accctctgcc gcgacctgga ctcttattca tc
//