LOCUS KP173683 3959 bp RNA linear VRL 30-MAR-2015 DEFINITION Avian orthoreovirus strain Reo/PA/Turkey/22342/13 segment L1, complete sequence. ACCESSION KP173683 VERSION KP173683.1 KEYWORDS . SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3959) AUTHORS Tang,Y., Lu,H., Sebastian,A., Yeh,Y.T., Praul,C.A., Albert,I.U. and Zheng,S.Y. TITLE Genomic characterization of a turkey reovirus field strain by Next-Generation Sequencing JOURNAL Infect. Genet. Evol. 32, 313-321 (2015) PUBMED 25841748 REFERENCE 2 (bases 1 to 3959) AUTHORS Lu,H. and Tang,Y. TITLE Direct Submission JOURNAL Submitted (19-NOV-2014) Veterinary and Biomedical Sciences, The Pennsylvania State University, 101 Wiley Lab / Avian Virology, University Park, PA 16802, USA COMMENT GenBank Accession Numbers KP173683-KP173692 represent sequences from the 10 segments of Avian orthoreovirus strain Reo/PA/Turkey/22342/13. ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3959 /mol_type="genomic RNA" /country="USA" /segment="L1" /collection_date="01-Oct-2013" /host="turkey" /db_xref="taxon:38170" /strain="Reo/PA/Turkey/22342/13" /organism="Avian orthoreovirus" CDS 22..3903 /codon_start=1 /protein_id="AJW82011.1" /translation="MSSRKVARRRHKDAAESKNAKTTDKLKSSSSDVEKSAKDATDKK VAAPKSDSPAASTPSSTDGASQTSVAKQTNDNDASVKESSPKPAVSSDGKDGMHGAVN SQDAKATVAVDNNKDRDVVFGGTGSGDKNAITKTGSVDNDGGVKTVPAKDATISSAKA MMEQKQLVAGLPKQPKSNSHLCTVCMAQFVSADALTIHQTTHSIGSNAALTSFSISTA VEEFIQSWAAATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIIPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETADALTLSVREMWMSRISQMNISPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVS RQAPNNLVQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPIDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNWLRQINLAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPAAFNPLSPPPSVIFNRGDAEVYEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFSLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFSTNTDLPVTVFGPDRSIPIERYRALVDPGALPATNQLPHTID LYCSLRRYYLETPPITATVTTYGDGLPALNH" /product="lambda-A" /note="contains zinc binding site" misc_feature 349..3864 /db_xref="CDD:212564" /note="inner capsid protein lambda-1 or VP3; Region: lambda-1; cd11674" misc_feature 31..>321 /db_xref="CDD:284736" /note="Histone H1-like nucleoprotein HC2; Region: HC2; pfam07382" misc_feature order(565..567,574..576,613..615,625..627) /db_xref="CDD:212564" /note="Zn binding site [ion binding]; other site" misc_feature order(538..549,562..564,577..579,694..699,1504..1509, 1513..1515,1519..1521,1702..1704,1714..1716,1723..1728, 2287..2298,2305..2310,2356..2358,2368..2376,2383..2385, 2401..2403,2407..2415,2419..2421,2431..2433,2440..2445, 2449..2451,2455..2457,2722..2727,2731..2733,2740..2742) /db_xref="CDD:212564" /note="homooligomer interface [polypeptide binding]; other site" misc_feature order(1345..1362,1378..1380,1384..1386,1426..1428, 1435..1440,1447..1452,1456..1458,1462..1464,1468..1473, 1477..1482,1519..1542,1561..1563,2209..2211,3100..3102, 3106..3108,3115..3117,3775..3783,3823..3825,3829..3831) /db_xref="CDD:212564" /note="VP6 interface [polypeptide binding]; other site" ORIGIN 1 gctttttctc cgaacgccga aatgagttcg cgcaaagtgg ctagacgtcg tcataaggat 61 gctgctgaat ctaagaatgc caagactact gataaactca agtcatcctc tagtgacgtc 121 gaaaagtccg cgaaagacgc cacggacaag aaggtcgccg ctccaaaatc agacagtcca 181 gctgcgtcca ctccatcctc aactgacggc gcttcacaga cgtccgtcgc caaacagacg 241 aatgataatg atgcttctgt caaggaatca tctcccaaac ccgctgtatc tagtgatggg 301 aaggacggaa tgcatggcgc cgtaaactca caagacgcta aggctactgt tgctgttgat 361 aataataagg atagagatgt agtgtttggt ggtacgggtt ctggtgacaa gaacgccatt 421 acgaagactg gatcagttga caatgatggg ggcgtcaaga ctgtaccagc taaggatgct 481 accatatctt cggctaaagc tatgatggag cagaagcagc tagtcgctgg tcttccaaaa 541 caaccaaagt cgaacagcca tctatgcacc gtttgtatgg ctcagtttgt ttccgctgac 601 gctcttacta ttcaccaaac cacgcattct attggttcca acgccgcttt aacgagcttt 661 tcgatttcta ccgctgtcga agaattcatt caatcctggg ctgctgctac gtccaccgct 721 aacaccaaga cggctctaac tgtgtctgat gttgactcat taatgatgac cgaaggcata 781 cgtctgataa cttgggattc agggttatgc acttcttttg agctagtccc aatcgtccac 841 tcaaacaccg tccaagatgt tatctcttac tcatggttca cgtcaagcta taacatcaca 901 actcctttcc cacaggcgac tgttgtacgc attgtcctgc gtaccaattg ggctgccaaa 961 ttagactccc cttcctcatc ccgtgagtgt gatcttcgcc tcgccccacc tacggagagc 1021 aatgctcggt ctttctcaat gctgcttaat acgggtgcga ccccagaagg tactttcaat 1081 cccaacaccc ttcgtatgaa tgtgctacag atgtgtctcc agtatgtcct agccaatctg 1141 catttgaatc gtagtactca atttaccatg gatctgaccg cggcggctcc caatctttct 1201 gcttcccaac tccgtatcat tcctgaggat aaagagggta aatggtttcc tgtcatgtat 1261 ccctctaggg tgaacatccc gctatttaat aagacggctg attttgtcaa ccagtgcatt 1321 cgcgatagaa ttggccggta cgaccgtgct cagacttttg ccggtgcgcc ctccgaatgg 1381 gctgacatgt gggaaacagc agatgctttg actctctctg ttcgtgagat gtggatgtca 1441 cgtatttctc aaatgaacat ttctcctgct gacattgccg atgctatctc cagatgctct 1501 caatctttgc tgaccgttgc tgctcctacg gctccctctg tagctcgctt attaccatgg 1561 cgtgtcagtt ctgacgagag gcagctcctt cagctgttga tgtacttgaa cgttggtacc 1621 agtgctgact acgtccaacc catcttgtcc gcgttcgctc ggaccttgtc tcgtgtgtct 1681 ccgctacgca ttaatcctac cttgattgct aatgctatgt cgacgattgt agagagcacc 1741 accaacactc agagtcctgc agccgctatc ttgtcgaaac tcaaacctgt tgcctctgac 1801 ttctccgact ttcggctggc gtgcgctgct tggctatata atggttgtgt ccaaacatat 1861 ctctctgaag attcatatcc gagcagtggt ggttccgtca ccagcatcga tacattagtt 1921 gatatgttcg tgtgcttgct ggccttacct ctagttactg atcctaacgc gccatgtcaa 1981 gccttcatgg tcgtcgccaa cgccatggtc ggttatgaga atctgcctat ggacgatcct 2041 aatttcactc agcagagatt ggctgcagcg ttcaacaatc ccaccacctg gcctcagtgt 2101 ttcctccatc ctcaaaacat cgaccgacgc cagtgtccga ttctctcatg gtgggctcag 2161 cagatacacc gtaattggcc tacgccgtcc caaatcacgt acggtgcgcc tgacattatt 2221 ggatcagcta atttattcac tcctcctgac gtgttgctgc tccctctaca gcataggccc 2281 atacgtatca ccaatcccac cctgaacttc gataatgagt tgacgacttg gcgtaatact 2341 gtggttgacc tggttctacg cattatcgac agtggtcggt atcagcctaa ttggaatcag 2401 tcgattcgtg cgtccatgcg taacgctatg acgaatttta ggatcatcaa gtcctacact 2461 cctgcttaca tagcagagct gctgcctgtg gaattagcgg ccattgcccc aactctacct 2521 tttcaacctt tccaagtgcc gtttgcccgc ttggaccgcg acgctattgt cactcacgtc 2581 aacgtgtcta gacaagctcc caacaatctt gttcaaccag cactgaacat gtctatgacg 2641 tatcagcgta caggcgtccc gatctcgctc agtgctcgtc ccttggctgt cgctctcttg 2701 tcaggtcagt accccattga tcctcccctt cagaccaacg tttggtacgt caatactctt 2761 acacctctgt attctaatga tggtcttttc aataacgtgc agcatgctat ggttgcctct 2821 gaagcctatg ctaccctgat cacgatgtta gcacaatgca ctgacatgca gtaccctgtg 2881 gatcgtccat tgaattggct tcgtcagatt aacctggctg ccaatgaggc gacgatattt 2941 ggacgctcta ttaattcact tttccagact gctttcgacc tctcgccctc cactgtgcta 3001 cttcagccct tcctggaatc cgacccgcgc gcgacgcaac ttgccatctc ctacgtccgt 3061 tataatggtg acagcgaaac atttgtgcca acagtgcgtc cgtcaatgat ttcggaggcg 3121 acgttgcttg ttgagcgtac tctctcacat gaatacaatc ttttcggttt gtgccgtggc 3181 gacatcattc tggggcagca tatgacccct gctgcgttca atccgttatc tccacctcct 3241 tccgttattt tcaacagggg cgacgctgag gtttacgagt ttggttctcg tagtttcgct 3301 aatttcggca tgaatgggga ggaaatcttg gttatggacg cgaatggcgt gcgccgtcct 3361 ttacttggcc gttgggttat gccgctgcaa cttctgatgg tgaatattgg cgtctttccc 3421 aagttactgt tggatcgtat tctgaaaggg cgtctgtaca tccggctcga ggttggagct 3481 tatccctata ctgtccagta ctaccaggga cgcgagttca cggatggctt ttcactactt 3541 gagcagtgga tgtctaaagt gtcgcctatg ggcatccccc ctgttccttt cctcatgccc 3601 caatccgaag gacataacat aacttctggc atggtcactc actacatctg gtccactgaa 3661 tacaatgatg ggtcactttt ctctactaac actgatctgc cggtcactgt attcggtccc 3721 gatcgctcca tcccgattga gcgttaccgt gcacttgtcg acccaggcgc tcttcctgct 3781 actaaccagc tcccgcacac catcgacctt tactgttcac tgagacgtta ctacttagag 3841 acccctccta tcacggctac tgtcaccact tatggcgatg gactccccgc gctgaaccat 3901 tagagcggcg aggctagacg cgagctgatc gcgtcgactc tcgttggaga ttattcatc //