LOCUS KP173685 3907 bp RNA linear VRL 30-MAR-2015 DEFINITION Avian orthoreovirus strain Reo/PA/Turkey/22342/13 segment L3, complete sequence. ACCESSION KP173685 VERSION KP173685.1 KEYWORDS . SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3907) AUTHORS Tang,Y., Lu,H., Sebastian,A., Yeh,Y.T., Praul,C.A., Albert,I.U. and Zheng,S.Y. TITLE Genomic characterization of a turkey reovirus field strain by Next-Generation Sequencing JOURNAL Infect. Genet. Evol. 32, 313-321 (2015) PUBMED 25841748 REFERENCE 2 (bases 1 to 3907) AUTHORS Lu,H. and Tang,Y. TITLE Direct Submission JOURNAL Submitted (19-NOV-2014) Veterinary and Biomedical Sciences, The Pennsylvania State University, 101 Wiley Lab / Avian Virology, University Park, PA 16802, USA COMMENT GenBank Accession Numbers KP173683-KP173692 represent sequences from the 10 segments of Avian orthoreovirus strain Reo/PA/Turkey/22342/13. ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 7.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3907 /mol_type="genomic RNA" /country="USA" /segment="L3" /collection_date="01-Oct-2013" /host="turkey" /db_xref="taxon:38170" /strain="Reo/PA/Turkey/22342/13" /organism="Avian orthoreovirus" CDS 13..3870 /codon_start=1 /protein_id="AJW82013.1" /translation="MAQIRGLRLSTTLSAPPSRKALTLHTYDELVSALKLTAKPWRPL KSKGQDSVTAVQLSFPLNGYTEPMFILEKDMSYEDFESWLSPLLSALADQLLRRYPIA SHHGRLVNPLLSNAIVAAFLSNAPYLHALDHLFIIRGAIEDIMDIGLSIQNHLWYDRG ALVTPAGQKFIQLSGYQFSSQDPCLFSKQLRCYGLVYYFLNMSDCVSYCQRHLSNSTP LIHFDRPSNGVHCLVPSELTTPIAGSLSVSALSSILLESCIQQSLLNTRTPTGSPAAR QVEALLPISSPFFERQNTLEYSLFALSNALVNGYQLTDLQSSHPDCATVAATLARLID FSKDITVIRPSPAQFNIYADSPLTYSGENANFIRRVPCTSGSSIGPVVIGKTVGRAVG WMPQFDPASSYNPDLAMDSLARATTLPLRAKFSPFWSGPALFSSASCNRKNGIYDIQF MSRFPSSYFSDDDTAARARFSSYRAVKDRSLLKDTANLMYLSNLSNSHDRRLIPESKT MVYVGASGTHADNQPSVIRPLLDGSLQGVFKPLSVKQIGWEVTNGTICDVELPLATGT FFLVYSDVDQVQAGDNDLDASSRRFCSQLDMLIKLTYTGGSVIAKCNFPTSLVWRHVF MTISPYFSSIHLLKPLIANNLELYVLLAEKLPVPEAPFFPSADMVVFWRSQIQRYRTL RDSFSIVPQIGSTLSLEDPLTVSVLNFVDVTSLSSAEDQRALAAFSVITSIGSQKLSI HPYFDSYRTQLIGIITPHSRNMLDRLAYIPRVFPSTIDVQHRIMSSSEPEIFGFHSTY WTQLSFFYDTVLTQTDFTVAKHWLDLGAGPEARILTFLPSDLPVTLCDTRPFIFPPGC WATFTDFLNYNYLTTNVILSTGADIVSCILTLGAACADANMTLHEGVRQIVSQCVDAN VRTLFLQLNCPLPSAGDVPRDVLELVQANSTYIFHPLGRVEPFIPYSALFEIVEDLCP GIVVEIKTMDPSLPWLNYAIQSNAAVSSDDIALAMRLSHFCPLFVFHLNRRSADFPDD ARVGSPFTVLLSNYEDTSSYEVTLDNVTIATIAAGSLMGFSSGVQVTPNGDQLTLTID PASPGILSIIQVLPVRISLGSCVIEAPDPSLSLIFPAKLDTSLSGTDLELFLSDWYDV ALFYVDEVNSRLLPVSDTKYEIYRKDQAPNTRTINYIFDRSDIFFKIVLCDVSPSGVG RFIYHELPELSSPVWPDDVRTFLSLPFDSPMVIVSPDGPVNYDGVTVTPPTSWLTVDG STCVIDGRPSFFVPPGRYGLVRV" /product="lambda-B" /note="core-spike protein" misc_feature 13..3861 /db_xref="CDD:283634" /note="Reovirus core-spike protein lambda-2 (L2); Region: Reovirus_L2; pfam06016" ORIGIN 1 gcttttccac ccatggctca gataagaggc cttcggttgt caacgacgct ctcagctcct 61 ccttcacgga aagctttaac tttacacaca tatgatgagc tagtatctgc gctaaagttg 121 actgcgaaac catggcgacc tctcaagtct aaaggtcagg attccgttac tgcagtgcag 181 ctatcattcc ctctcaatgg gtataccgag ccgatgttta tactggagaa agacatgagc 241 tatgaagatt ttgaatcttg gttatccccg ctgctctcag ctctggcaga tcaattgttg 301 agacgttatc ctatcgcatc tcatcatggg cgattggtca acccgctgct ttccaacgcc 361 attgttgcgg cgtttctgtc gaacgctcct tatttgcacg cgttagacca tctcttcatt 421 atccgtggcg ctattgagga cattatggac attgggctct ccattcagaa ccacttgtgg 481 tatgatcgtg gcgcccttgt gacgccggct ggtcagaagt tcattcaatt gtctggctat 541 cagttttcct ctcaagatcc ttgcctattt tccaagcagt tgcgctgcta tgggcttgtt 601 tattactttt taaacatgtc agactgcgtt tcgtactgtc agcggcatct ctccaactct 661 actccactaa ttcactttga tcgcccgtct aacggcgttc attgcctggt tccttctgag 721 ctgacaactc cgatcgctgg ttctttgtct gtgtcggcac tcagttctat cttgcttgaa 781 tcctgcatcc agcaatctct tctcaatact cggaccccta ccggtagtcc agctgcgaga 841 caagtggagg cgttgctacc catttcatcc cctttctttg aacgtcagaa cactctggag 901 tattctttgt tcgctctctc caatgcgttg gttaatggtt atcagttaac agatttgcag 961 tcgagccacc cagattgcgc cactgtagcc gctactttgg ctaggttgat tgatttctcg 1021 aaggacatta ccgttatccg accatctccc gcacaattta atatctacgc tgatagtccg 1081 ctgacttaca gcggtgagaa tgccaacttt attcgccgtg taccttgcac ttctggaagt 1141 tccattggcc cagtcgtcat cggcaagact gttgggcgtg ctgtaggttg gatgccccag 1201 tttgacccag cttcttcata taatcccgac ttagctatgg actccttagc tagggcgaca 1261 acgttgcctc tccgtgcaaa attttctccc ttctggtctg gtccagccct gttctcctct 1321 gcttcgtgca atcggaagaa tggcatttat gatatccagt tcatgtctcg gtttccatct 1381 tcatatttca gtgacgacga tacagccgcc agagcacgat tctcttctta tcgcgccgtt 1441 aaggacagat ctttattgaa ggacactgcc aacttgatgt acctgtcgaa cctgtctaat 1501 tcacatgatc gtcgcctcat cccagaatcg aaaaccatgg tgtatgttgg ggcttcaggt 1561 acgcacgcgg acaaccaacc atctgttatt agacctctct tagacgggtc acttcaaggc 1621 gtcttcaaac ccctctcagt aaagcagatt ggatgggaag taactaatgg cactatttgc 1681 gacgtcgagt tgccacttgc gacgggtacg tttttcctcg tgtacagtga cgtcgatcag 1741 gttcaggctg gtgacaacga tcttgacgcg tcttctcgcc gtttctgctc tcaattggat 1801 atgctcatta aattgacata tacaggtggg tccgtcattg ccaaatgcaa ctttccgact 1861 agtctcgtct ggcgacacgt ttttatgact atttctccat atttttcttc cattcatttg 1921 ctgaaaccgc tcattgctaa taatttggaa ttatatgtcc tcttggctga gaagctacca 1981 gttcctgaag cgcccttctt cccctctgca gatatggtcg ttttctggag atcacagatt 2041 caacgttatc gcactttacg tgattctttt tctatcgttc cccaaattgg ctctactctc 2101 agtttagagg atcctttaac cgtctctgtt ctgaactttg ttgatgtaac ttccctttca 2161 tctgcggaag atcaacgcgc cctggctgcc ttctcggtga ttacttcaat aggatctcag 2221 aaattgtcaa ttcaccccta ttttgatagt taccgcacgc agctgatcgg aattattact 2281 ccccactctc gtaacatgtt ggataggtta gcgtacatac cacgtgtctt tccctccact 2341 atcgacgttc agcaccgcat catgtcatcg tctgaacccg agatcttcgg tttccactct 2401 acttattgga ctcagctttc attcttttac gacaccgtgc tgacgcagac ggatttcact 2461 gtagcgaaac attggcttga cttgggcgca ggccccgaag ccagaatttt gaccttctta 2521 ccttctgacc tccccgtcac tctatgtgat actcggcctt tcatttttcc tcctggttgt 2581 tgggctacgt ttacagattt tctcaattac aactacttaa ccacaaacgt cattctctcg 2641 acgggtgctg atattgtgtc ttgcattctc accttaggcg ccgcttgcgc tgacgcgaac 2701 atgacgcttc atgagggagt acgtcagata gtttcgcaat gtgtggatgc taacgttagg 2761 acgctcttcc tgcagctcaa ttgtcctttg ccttctgccg gtgacgtgcc gcgtgacgtt 2821 ctggagttgg tgcaggccaa ttcgacctat atttttcatc cgttgggtcg tgtcgaacct 2881 ttcatccctt actctgctct ttttgagatt gtggaggacc tgtgtccggg catcgttgta 2941 gagattaaga cgatggatcc atcccttccg tggcttaatt atgctataca gtctaatgca 3001 gccgtgtcat ctgatgatat agcgttggct atgcgattgt cacacttctg ccccttattt 3061 gtatttcatt tgaaccgccg ttcggctgat ttcccggatg atgcgcgtgt cggctccccc 3121 ttcacggttt tactgtctaa ctatgaagat acaagctcgt atgaggtcac tttggataac 3181 gttacgattg cgactatcgc cgctgggtct ctcatggggt tctcgtcggg tgttcaggtc 3241 actccaaatg gtgatcagct cactttaact atagaccctg ccagtcctgg gattctatcg 3301 attatccaag tgcttcctgt gcgtatctct ctcggtagct gtgtgataga ggccccagac 3361 ccttccctgt ctctgatctt tccagccaaa ttggacacat ccctctcggg cacggatttg 3421 gagttgttct tatccgattg gtatgatgtc gctttattct acgtcgatga agtcaattct 3481 cgtctactgc cggtgtccga taccaagtat gaaatttata gaaaagatca agctcctaat 3541 actagaacga tcaattacat attcgatcgt tcagacattt tcttcaagat agtgttgtgt 3601 gacgtttctc cgtcaggggt cggccgattc atttatcacg agctacctga attaagctca 3661 cccgtgtggc ctgatgacgt tcgcaccttc ctgtcgttgc ccttcgactc tccaatggtc 3721 atcgtctctc ctgacggtcc tgtaaattat gatggtgtga ccgtgacgcc tcccacgtct 3781 tggctgacgg ttgacggtag tacatgcgtt attgatggtc ggccttcatt ctttgtgcct 3841 cctggtagat atggcttggt gagagtgtag gcgaccgcgg gcctccagta gaagctgata 3901 ttgtatc //