LOCUS       KP173690                1324 bp    RNA     linear   VRL 30-MAR-2015
DEFINITION  Avian orthoreovirus strain Reo/PA/Turkey/22342/13 segment S2,
            complete sequence.
ACCESSION   KP173690
VERSION     KP173690.1
KEYWORDS    .
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; dsRNA viruses; Reoviridae; Spinareovirinae;
            Orthoreovirus.
REFERENCE   1  (bases 1 to 1324)
  AUTHORS   Tang,Y., Lu,H., Sebastian,A., Yeh,Y.T., Praul,C.A., Albert,I.U.
            and Zheng,S.Y.
  TITLE     Genomic characterization of a turkey reovirus field strain by
            Next-Generation Sequencing
  JOURNAL   Infect. Genet. Evol. 32, 313-321 (2015)
   PUBMED   25841748
REFERENCE   2  (bases 1 to 1324)
  AUTHORS   Lu,H. and Tang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2014) Veterinary and Biomedical Sciences, The
            Pennsylvania State University, 101 Wiley Lab / Avian Virology,
            University Park, PA 16802, USA
COMMENT     GenBank Accession Numbers KP173683-KP173692 represent sequences
            from the 10 segments of Avian orthoreovirus strain
            Reo/PA/Turkey/22342/13. ##Assembly-Data-START## Assembly Method ::
            CLC Genomics Workbench v. 7.0 Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1324
                     /mol_type="genomic RNA"
                     /country="USA"
                     /segment="S2"
                     /collection_date="01-Oct-2013"
                     /host="turkey"
                     /db_xref="taxon:38170"
                     /strain="Reo/PA/Turkey/22342/13"
                     /organism="Avian orthoreovirus"
     CDS             16..1266
                     /codon_start=1
                     /protein_id="AJW82018.1"
                     /translation="MARAVYDFFSTPFGNRGLATNRTQLSSLLSSSNSPWQRFLSSLT
                     PLTAPGIVSTPEAPYPGSLLYQESMLHSATVPGVLGNRDAWRTLNVFGLSWTDEGLSG
                     LVAAQDPPPAAPYQPASAQWSDLLNYPRWANRRRELQAKYPLLLRSTLLSAMRAGPVL
                     YVETWPNMISGRLADWFMSQYGNNFVDMCARLTQSCSNMPVEPDGNYDQQMRALISLW
                     LLSYIGVVNQTHTIGGFYFSSKTRGQALDSWTLFYTTNTNRVQITQRHFAYVCARSPD
                     WNVDKSWIAAANLTAIVMACRQPPMFANQGVINQAQNRPGFSMNGGTPVHELNLLTTA
                     QECIRQWVVAGLVSAAKGQALTQEANDFSNLIQADLGQIKAQDDALYNQQPGYARRIK
                     PFVNGDWTPGMTAQALALLATFTV"
                     /product="sigma-A"
                     /note="member of reoviral sigma1/sigma2 family"
     misc_feature    118..1251
                     /db_xref="CDD:281127"
                     /note="Reoviral Sigma1/Sigma2 family; Region: Sigma_1_2;
                     pfam03084"
ORIGIN      
        1 gctttttctc ccacgatggc gcgtgccgta tacgacttct tttctacgcc tttcgggaat
       61 cgtggtctag cgacgaaccg tactcaattg tcatcattac tatcaagctc gaattccccg
      121 tggcaacgat ttctgtcatc actaactcca ctgacggcgc caggtatcgt ttcaacacct
      181 gaagctcctt atccaggctc gctgctgtac caagagtcta tgctccacag tgccactgtt
      241 cctggggtac tcggcaatcg tgatgcttgg cgtacactca acgtttttgg gctttcttgg
      301 accgatgaag gactgtccgg tctggtagct gctcaagatc ctccccccgc tgccccttac
      361 cagccagcct ctgctcagtg gtcagatctc cttaactacc ctagatgggc gaacagacgt
      421 cgtgagctgc aagctaaata cccgcttctg cttcgatcca ctctgctttc tgccatgcga
      481 gctggtcctg ttctctacgt tgagacgtgg ccgaatatga tttcaggccg actggctgac
      541 tggttcatgt cccaatatgg caacaatttt gttgacatgt gtgctcggtt aacgcagtct
      601 tgttcgaaca tgcctgttga gcctgatggg aattatgatc agcagatgcg tgctttgatt
      661 agtttgtggc tcctttcgta tattggggta gtcaaccaga ctcataccat cggcggtttc
      721 tacttctcat cgaagacccg gggccaagcg ttggacagtt ggactttgtt ttataccaca
      781 aacactaacc gcgtccaaat tacccagagg cacttcgctt acgtgtgcgc acggtctcct
      841 gattggaacg ttgataaatc gtggatcgct gcggcgaacc taactgctat cgtcatggct
      901 tgccgtcaac cgccgatgtt tgccaatcag ggcgttatta atcaagcgca gaaccgacct
      961 ggcttttcca tgaatggagg gacgcccgtc catgagctca acttactgac taccgcgcag
     1021 gaatgcatcc ggcagtgggt ggtagctggt ttggtgtcag cagcgaaggg gcaagcatta
     1081 acgcaggagg ctaatgactt ctcaaacctc atccaggcag atctgggtca gattaaggcg
     1141 caggatgacg ctttgtacaa tcagcaacca ggatacgcga gaagaataaa acccttcgtt
     1201 aatggcgact ggacaccagg tatgaccgcg caagccctgg ctcttctagc cacttttacc
     1261 gtctaggcgt agggtcgtac gctgcccgag tccagccctc cggcagcacg tgggtgtatt
     1321 catc
//