LOCUS       KJ874261                1996 bp    RNA     linear   VRL 11-FEB-2015
DEFINITION  Avian orthoreovirus isolate Turkey/USA/MN/2011/TARV-MN2 muNS gene,
            complete cds.
ACCESSION   KJ874261
VERSION     KJ874261.1
KEYWORDS    .
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; dsRNA viruses; Reoviridae; Spinareovirinae;
            Orthoreovirus.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Mor,S.K., Marthaler,D., Verma,H., Sharafeldin,T.A., Jindal,N.,
            Porter,R.E. and Goyal,S.M.
  TITLE     Phylogenetic analysis, genomic diversity and classification of M
            class gene segments of turkey reoviruses
  JOURNAL   Vet. Microbiol. 176 (1-2), 70-82 (2015)
   PUBMED   25655814
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Mor,S.K., Verma,H., Marthaler,D., Sharafeldin,T.A., Porter,R.E.,
            Jindal,N. and Goyal,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2014) Department of Veterinary Population
            Medicine and Veterinary Diagnostic Laboratory, University of
            Minnesota, 1333 Gortner Ave, Saint Paul, MN 55108, USA
COMMENT     ##Assembly-Data-START## Assembly Method :: Sequencher v. 5.1
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /mol_type="genomic RNA"
                     /country="USA"
                     /isolation_source="tendon"
                     /segment="M3"
                     /collection_date="2011"
                     /host="turkey"
                     /db_xref="taxon:38170"
                     /isolate="Turkey/USA/MN/2011/TARV-MN2"
                     /organism="Avian orthoreovirus"
     CDS             25..1932
                     /codon_start=1
                     /protein_id="AIT18548.1"
                     /translation="MASTKWGDKPMSLSMSHDGSSIRSAASQFLSVPLSHSTPIPPQR
                     KTVLLKFMIGDDLVTVQGALAPFDEYWYDNQPLLAQAVEMLASEDRLRHFEHYEKFLL
                     KKGHQITEIMNRLRLFFTDVLKVKMEADALPALAQYLMLGDLEAVSTDHVPDACVPVA
                     SKIVTKQQTIAKSPGRLDEEEYNVIRSRFLTHEVFDLTSDLPGVQPFMDMYYATVPRA
                     DSTGWCAYRRKGLLIHAPDEQFSDLTIFSTRFTASRELQLMAGDVVVACFDLMDVSDI
                     APSHHASVQEERTIGTSRYSNVTANDHPLVFFSPNALRWAIDHACTDSLVSTRNIRVC
                     VGIDPLVTRWTRDGVQEAAILMDDKLPSAGRARMALRTLLLARRSPMTSFLLGALKQS
                     GGQLIEHYRCDAANRYGSPTVPTSHPPPCSKCPELKEQIAKFSSSPIPKLNSTTGPAV
                     LLSKIADLQRANRELSLKLVDVQPAREDHLLAYLDEHVCVNAKDHEKDLLARCNVSSD
                     SISSILGQRAKNRERFETRLRQEASAEWEPRVEALNRELAEARLEQQDMMTQSLQYLS
                     ERDELLHEVDELKRELATLRSANVRLNADNHRMSRATRVGNAFVSDVEPLPSGIPGES
                     KPSMEELVDDL"
                     /product="muNS"
                     /note="nonstructural protein"
ORIGIN      
        1 gctttttgag tcctagcgtg gatcatggcg tcaaccaagt ggggagacaa gccgatgtcg
       61 ctctcaatgt ctcacgatgg atcatctatc cgcagtgctg cctcacaatt cttgtcggtt
      121 cccctatctc attcaacgcc catcccacct caacggaaga ctgtactgct gaagtttatg
      181 attggcgatg acctggttac tgttcagggt gccctcgccc cgtttgacga gtattggtat
      241 gataatcagc ccctgctggc ccaggctgtt gagatgcttg cctctgagga tcgtttgcgt
      301 cattttgagc attatgagaa atttttactt aagaaaggtc atcaaataac tgagatcatg
      361 aacaggctac gcctcttctt cacggatgtt cttaaagtca agatggaagc tgacgcttta
      421 cccgccctag ctcaatatct aatgcttgga gacctagagg ctgtctctac cgatcacgta
      481 cctgatgcct gcgtcccagt cgcctcgaaa atcgtgacta agcagcagac cattgctaaa
      541 tcccctggcc gtctcgatga ggaggaatac aatgttattc gatcacgctt cctcactcac
      601 gaagttttcg acttaacgtc tgatttaccc ggagtgcaac cgttcatgga catgtattat
      661 gccactgttc cccgtgctga ttctacagga tggtgcgcat atcgtcgaaa gggcttactc
      721 attcacgctc ctgatgagca attctcagat ttgactatct tctccacacg tttcacggcg
      781 tcacgtgagc tacagcttat ggctggagat gtcgtcgtag cttgctttga tctcatggac
      841 gtttctgaca ttgctccatc tcatcatgca tcggtgcagg aggaacgtac tatcgggact
      901 agtcggtatt cgaatgtaac ggctaatgat catcccttgg tgttcttctc acccaatgcg
      961 ctccgatggg caattgatca tgcttgtacc gactctttgg tttctactcg gaatattcgt
     1021 gtttgtgttg gtatcgaccc attggtaact cgatggactc gagacggcgt gcaagaggct
     1081 gccattctca tggatgataa gctaccatca gccggtcgtg cgcgtatggc gttgcgaaca
     1141 ttgcttctcg ctaggcgttc accaatgaca tccttcttac tcggtgcctt gaagcagtca
     1201 ggcggtcagt taatagagca ctatcgatgc gacgcggcta acagatacgg gtcccccacc
     1261 gtcccgactt cccatccgcc accctgctca aagtgtcctg agctaaaaga acaaattgcc
     1321 aagttctcgt catcgccgat acccaagctc aactcgacca ctggtccagc cgtactgctg
     1381 tccaaaatcg ctgacctcca gcgtgcgaat agagaactgt cactgaaact agtcgatgtc
     1441 caacctgcta gggaggatca cttgttggct tatcttgatg aacacgtgtg cgtaaacgct
     1501 aaggatcatg aaaaagacct gcttgctcgt tgtaacgtat ctagtgattc aatctcttcc
     1561 atccttggtc agcgtgcgaa gaatcgtgaa aggtttgaga ctcggctgcg acaggaggct
     1621 agtgctgagt gggaacctcg cgtggaagcg ttaaaccgag agttggctga ggctcgctta
     1681 gaacagcagg acatgatgac tcaatctcta cagtatttaa gtgagcgtga cgaactgctc
     1741 catgaagtgg atgagcttaa gcgtgaactg gccaccctgc gttccgctaa tgtacgattg
     1801 aatgctgata accatcggat gagtcgtgca actcgtgtcg gaaacgcgtt cgtcagtgac
     1861 gtcgagcctc taccctctgg catacctggt gaatcgaaac catctatgga agaattggtg
     1921 gatgatctgt gagctttgac ctgtgactcg gcttctctct gattccatgt acccacggcg
     1981 gactcggtta ttcatc
//