LOCUS KF741766 3959 bp RNA linear VRL 30-NOV-2014 DEFINITION Avian orthoreovirus strain attenuated vaccine strain S1133 segment L1, complete sequence. ACCESSION KF741766 VERSION KF741766.1 KEYWORDS . SOURCE Avian orthoreovirus ORGANISM Avian orthoreovirus Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3959) AUTHORS Teng,L., Xie,Z., Xie,L., Liu,J., Pang,Y., Deng,X., Xie,Z., Fan,Q. and Luo,S. TITLE Direct Submission JOURNAL Submitted (17-OCT-2013) Department of Biotechnology, Guangxi Veterinary Research Institute, 51 You Ai Road, Nanning, Guangxi 530001, China FEATURES Location/Qualifiers source 1..3959 /mol_type="genomic RNA" /db_xref="taxon:38170" /strain="attenuated vaccine strain S1133" /segment="L1" /organism="Avian orthoreovirus" CDS 22..3903 /codon_start=1 /protein_id="AIS22929.1" /translation="MSSRKVARRRHKDATESKDTKDTNKSKPSSIDAKESTDSATDKK VTAPPPNNPAASTPSSTDGASQTSVAKQTNDNDASVKESAPKPTVSSDGKDGMHGAVK SQDAKATVAVDNNKDRDVVFGGAGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKA MMDQKQLVAGLPKQPKSANHLCTVCMAQFASADALTIHQTTHSIGPNAALTSFSISTA VEEFIQSWAAATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIVPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRVGRYDRAQTFAGAP SEWADMWETADALTLSVREMWMSRISQMNITPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLIDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPSAVALLSGQYPTDPPLQTNVWYVNTLT LLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNWLRQINLAANEATI FGRLINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDADVYEFG PRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTID LYCSLRRYYLETPPITATVTTYGDGLPALHH" /product="lambda-A protein" misc_feature 349..3864 /db_xref="CDD:212564" /note="inner capsid protein lambda-1 or VP3; Region: lambda-1; cd11674" misc_feature order(565..567,574..576,613..615,625..627) /db_xref="CDD:212564" /note="Zn binding site [ion binding]; other site" misc_feature order(538..549,562..564,577..579,694..699,1504..1509, 1513..1515,1519..1521,1702..1704,1714..1716,1723..1728, 2287..2298,2305..2310,2356..2358,2368..2376,2383..2385, 2401..2403,2407..2415,2419..2421,2431..2433,2440..2445, 2449..2451,2455..2457,2722..2727,2731..2733,2740..2742) /db_xref="CDD:212564" /note="homooligomer interface [polypeptide binding]; other site" misc_feature order(1345..1362,1378..1380,1384..1386,1426..1428, 1435..1440,1447..1452,1456..1458,1462..1464,1468..1473, 1477..1482,1519..1542,1561..1563,2209..2211,3100..3102, 3106..3108,3115..3117,3775..3783,3823..3825,3829..3831) /db_xref="CDD:212564" /note="VP6 interface [polypeptide binding]; other site" ORIGIN 1 gctttttctc cgaacgccga aatgagttcg cgcaaagtgg ctagacgtcg tcataaggat 61 gctactgaat ctaaggacac taaagacact aataaatcta agccatcttc tattgatgct 121 aaggaatcta cggatagcgc tacggataag aaagtcactg ctccaccacc aaataatccg 181 gctgcttcta ctccctcctc cactgatggg gcttcccaaa catctgtcgc taagcagacg 241 aatgataatg acgcctcagt taaggaatca gctcccaagc ctactgtctc cagcgacggg 301 aaagatggga tgcacggtgc tgtaaagtcg caagacgcta aggctaccgt agctgtagat 361 aataataagg atagagatgt agtatttggc ggtgcaggtt ctggtgacaa aaatgctatc 421 acgaaaactg gctccgttga caatgatggg ggtgttaagg tcgttccagc caaggatgct 481 acgatatctt cggccaaagc catgatggat caaaagcagt tagtcgctgg tcttccgaaa 541 caaccgaagt ctgctaatca tctgtgtacc gtctgcatgg ctcagtttgc gtcagctgac 601 gctcttacta ttcaccaaac tacgcattct attggtccca acgcggctct gacgagtttt 661 tcgatctcta ctgctgttga agaattcatt caatcatggg ctgctgccac atccacggct 721 aacaccaaga cggctttgac tgtgtctgac gttgactcac tgatgatgac tgaaggaata 781 cgccttataa cttgggattc tgggttatgc acgtcttttg agcttgtccc gatcgtccat 841 tcaaacactg ttcaagatgt tatttcatat tcatggttca cgtcaagcta taacatcacg 901 actcccttcc cacaagcgac tgtcgtgcgg attgtcttgc gtactaactg ggctgccaaa 961 ttggattctc cctcttcgtc gcgtgaatgt gatcttcgtc ttgctccacc tacagagagc 1021 aatgctcgat cattctcaat gctactcaat acgggtgcga ctccagaagg cactttcaac 1081 cccaacaccc ttcgtatgaa cgtgctgcag atgtgtcttc agtatgttct agctaacttg 1141 cacctgaacc gtagcactca gtttaccatg gatttgactg ccgcggctcc caatctatct 1201 gcgtctcaac tccgtatcgt tccagaggat aaggagggta aatggtttcc tgtcatgtat 1261 ccatcccgag tgaacatccc actgttcaac aagacggctg attttgttaa ccagtgcatt 1321 cgcgatagag ttggtcgata cgatcgcgcc cagacttttg ctggtgcacc ttctgaatgg 1381 gctgacatgt gggaaacagc agacgcgtta actctctccg tccgtgaaat gtggatgtca 1441 cgcatttctc aaatgaacat tactcccgct gatattgctg acgctatctc cagatgttct 1501 cagtctttgc tcactgttgc cgcgccgaca gctccttctg tggctcgttt gttaccttgg 1561 cgggttagtt ctgatgagag gcagctgctc caactgctga tgtacttaaa tgttggtact 1621 agtgctgact acgttcaacc gattctgtct gcgttcgctc gaactctgtc tcgtgtgtca 1681 ccactgcgaa ttaatcctac cctaatcgct aatgctatgt cgacaattgt cgagagcact 1741 actaatactc agagtcctgc tgcggctatc ttgtcaaagc ttaaacctgt cgcatctgat 1801 ttttccgact ttaggttggc atgtgccgct tggttatata atggttgtgt ccagacatac 1861 ttgtctgagg attcgtatcc gagcagcggt gggtctgtca ctagcatcga cacgttgatt 1921 gatatgtttg tgtgtttgct ggcgttgcct ctggttactg atcctaacgc tccttgtcaa 1981 gcctttatgg ttgtcgctaa tgctatggtt ggttacgaga acctgcctat ggacgaccct 2041 aattttactc agcagagact ggctgcagcg ttcaataatc ctactacctg gcctcaatgc 2101 ttcctccacc ctcaaaatat tgatcggcgc cagtgtccga ttctttcatg gtgggctcag 2161 cagattcatc gtaattggcc tacaccatct cagattactt atggtgcgcc tgatatcatc 2221 ggctccgcta acttgttcac tccccctgat gtgttgctgc ttccattaca acataggccc 2281 atccgtatca ccaatcccac cctgaacttc gataatgagt tgacgacttg gcgtaacacc 2341 gtggttgatt tagtcctgcg cattattgac agtggtcggt accagcctaa ttggaatcag 2401 tctattcgtg cgtctatgcg gaatgcgatg acgaacttca ggatcattaa gtcctataca 2461 cctgcttaca tagcggaatt gctacctgtg gaactggcgg ctatcgctcc aactctaccc 2521 ttccagcctt tccaggtgcc gtttgctcgc ttagatcgtg acgctatcgt cacccacgtc 2581 aatgtgtcca gacaagctcc caacaatctt gctcaacctg cattgaacat gtccatgacg 2641 taccagcgca caggagttcc aatctctctt agtgcccgtc cctcggccgt cgctctttta 2701 tcaggtcagt atcctactga tcctcctctt cagaccaatg tttggtacgt gaacactctc 2761 acacttctat attccaatga tggtctcttt aacaacgtgc agcatgctat ggttgcttct 2821 gaagcttacg caactttgat cactatgctg gcccagtgca ctgacatgca gtaccccgtg 2881 gatcggccat tgaactggct tcgtcagatt aatttggctg ccaatgaagc gacgattttt 2941 ggtcgcttaa ttaactcact tttccaaacc gcttttgacc tctcaccctc tactgtgttg 3001 cttcagcctt tcttggagtc tgatccacgt gcaacgcagc tcgccatttc ttacgtccgt 3061 tataatggtg atagtgagac cttcgtgcca acagtgcgtc cgtctatgat ctcagaggcg 3121 acattgctcg ttgagcgtac tctctcgcac gaatacaacc ttttcggttt atgtcgcggt 3181 gacatcattc tggggcagca catgactcct actgcgttca atcctctggc tccgcctccc 3241 tctgtcattt ttaatagggg tgatgctgac gtttatgagt ttggcccacg tagcttcgcc 3301 aacttcggta tgaatgggga ggagatcttg gtcatggatg cgaatggcgt gcgtcgtcca 3361 ttacttggcc gttgggttat gccactgcag cttctgatgg tgaatattgg cgtctttccc 3421 aagttgttgt tggatcgtat cttgaaggga cgcttataca tccgacttga agttggcgcg 3481 tatccctaca ctgtgcagta ttaccaggga cgtgagttca cagatggctt cactctgctt 3541 gagcaatgga tgtctaaggt gtcacccatg ggtatccctc ccgtcccttt cctcatgcca 3601 cagtccgaag gacacaacat cacttcaggc atggttactc attacatctg gtccactgaa 3661 tacaatgacg ggtcactctt cgccacgaac actgacctgc cggttactgt gtttggtcct 3721 gaccgtacca tcccaatcga acgctaccgg gcactcgttg atccaggcgc tcttcctgct 3781 accaaccaac tgccgcacac catcgacctt tactgctcac tgagacggta ttatctggaa 3841 acacctccta tcaccgctac tgttaccact tatggcgatg gactccccgc gctgcaccat 3901 tagagcggcg aggctagacg cgagttgatc gcgtcgactc tcgttggaga ttattcatc //