LOCUS AY641740 3958 bp mRNA linear VRL 01-JUL-2005 DEFINITION Avian orthoreovirus strain 1017-1 core protein lambda A mRNA, complete cds. ACCESSION AY641740 VERSION AY641740.1 KEYWORDS . SOURCE Avian orthoreovirus strain 1017-1 ORGANISM Avian orthoreovirus strain 1017-1 Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (sites) AUTHORS Song,C.H., Su,Y.P. and Lee,L.H. TITLE Avian orthoreovirus strain 1017-1 core protein lambda A (L1) mRNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 3958) AUTHORS Song,C.H., Su,Y.P. and Lee,L.H. TITLE Direct Submission JOURNAL Submitted (30-MAY-2004) Department of Veterinary Medicine, College of Veterinary Medicine, National Chung Hsing University, 250 KuoKuang Road, Taichung, Taiwan 402, Republic of China FEATURES Location/Qualifiers source 1..3958 /mol_type="mRNA" /db_xref="taxon:253446" /organism="Avian orthoreovirus strain 1017-1" CDS 21..3902 /codon_start=1 /protein_id="AAV52824.1" /translation="MSSRKVARRRHKDATESKDTKNTTKSKSPANDVKESVNSVTDKK VTVPLPDNPAASTPSSTDGASQTSVAKQTNDNDSSVKESSPKPTVSNDGKDGMHGAVK SQDAKATVAVDNNKDRDVVFGGVGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAQA MMEQKQLVAGLPKQPKSVNHLCTVCMAQFASADALTIHQTTHSIGSNAALTSFSISTA VEEFIQSWAAATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIVPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETADALTLSVREMWMSRISQMNITPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNWLRQINSAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATHLATSYVCYNGDSETFVPTVRPSVI SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDADVYEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM GTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTID LYCSLRRYYLETPPITATVTTYGDGLPALNH" /product="core protein lambda A" /note="L1" ORIGIN 1 gcttttctcc gaacgccgaa atgagttcgc gcaaagtggc tagacgtcgt cataaggatg 61 ctactgaatc taaggacacc aaaaacacta ctaagtctaa gtcacctgct aacgatgtca 121 aagaatctgt gaatagcgtc acggataaga aagttactgt tccactgcca gataatccag 181 ccgcctctac tccctcctcc actgatggag cttcacaaac atccgtcgct aagcagacga 241 acgataatga ctcgtcagtt aaggaatcat ctcctaagcc aactgtatct aatgatggga 301 aagatggaat gcatggtgct gtgaaatctc aagatgccaa ggccaccgtc gcggtagaca 361 ataataagga tagagatgta gtatttggtg gcgtaggttc tggtgataaa aatgctatca 421 cgaagactgg ctccgttgac aatgatgggg gtgttaaggt tgttccagct aaggatgcta 481 cgatctcttc ggcccaagcc atgatggagc agaagcagtt agtcgccggt ttgccgaagc 541 aaccaaagtc tgttaatcat ttgtgtaccg tttgtatggc ccagtttgca tcagctgacg 601 ctcttactat tcaccagact acgcattcca ttggctccaa tgctgctctg acgagcttct 661 cgatctctac tgctgtcgaa gaattcattc aatcatgggc tgctgctacg tccacagcca 721 acactaagac ggccttgact gtgtccgatg tcgactcact gatgatgact gaaggaatac 781 gcctcataac ttgggattct gggttatgta cgtcttttga actcgtccct attgtccatt 841 caaatactgt tcaagatgtc atttcgtact catggtttac atcaagctat aacatcacta 901 ctcccttccc gcaagcaact gtcgtgcgga ttgtcctacg cactaactgg gctgccaaat 961 tggactcccc ttcatcatcg cgtgaatgtg accttcgcct ggccccacct acagagagca 1021 atgctcggtc attttcgatg ttactcaata caggtgctac tccagaaggc accttcaatc 1081 ccaacactct tcgtatgaat gtgcttcaga tgtgtcttca gtatgtccta gccaatttgc 1141 acttgaatcg tagtacgcag tttaccatgg atttgactgc cgcggcccct aacctctctg 1201 cgtctcaact ccgtatcgtt ccagaggata aagaaggtaa atggtttcct gtcatgtatc 1261 catcacgagt gaacattcca ctattcaata agacagctga tttcgtcaat caatgcattc 1321 gtgatcgaat tggtcgatac gatcgtgctc agactttcgc cggtgcgcct tctgaatggg 1381 ctgacatgtg ggaaacagca gacgcgttaa ctctttccgt ccgtgagatg tggatgtcac 1441 gcatttctca aatgaacatc actcccgctg atattgctga cgctatctcc agatgctctc 1501 agtccctgct tactgtcgcc gcgcctacag ctccctccgt ggctcgttta ttgccttggc 1561 gggtcagttc tgatgagagg cagcttctcc aactgttgat gtacttaaat gttggtacta 1621 gtgctgacta tgttcaaccg attttgtctg cattcgctcg gactctatct cgtgtgtcac 1681 cactccgtat caatcctact ctaatcgcta atgccatgtc gacaattgtc gagagtacta 1741 ctaacaccca gagtcccgct gcggctatct tgtcaaagct taaacccgtc gcgtccgatt 1801 tctctgactt cagattagcg tgcgccgcct ggttatataa tggttgcgtc cagacgtact 1861 tgtctgagga ttcatatccg agtagtggtg ggtccgtcac tagcattgat acgctggtgg 1921 atatgttcgt gtgcttatta gcattgcctt tggtcactga tcctaatgct ccgtgtcaag 1981 ctttcatggt cgttgctaac gccatggttg gttacgagaa cctgcctatg gacgatccca 2041 actttactca gcaaagattg gctgcagctt tcaataatcc tactacctgg cctcaatgct 2101 ttctccatcc tcaaaacatt gatcggcgcc aatgcccgat tctttcatgg tgggctcaac 2161 agattcaccg taattggcct acaccatctc agattactta cggcgcgcct gatatcattg 2221 gttccgccaa cttattcact ccccctgatg tgttgctgct tccactgcaa cataggccca 2281 tccgtatcac caatcccacc ctgaactttg ataatgagtt gacgacttgg cgtaacaccg 2341 tagtcgatct agtcttgcgc attatcgaca gtggtcggta tcaacctaat tggaatcagt 2401 ctattcgcgc gtctatgcgg aatgcgatga cgaatttcag gataattaag tcgtacactc 2461 ccgcttacat agcagaactg ctacctgtgg aactggcagc tattgctcct actctaccct 2521 tccaaccttt tcaggtgccg tttgctcgtt tagatcgtga cgctattgtc actcacgtca 2581 atgtgtctag acaagctccc aacaatcttg ctcaacctgc actgaacatg tctatgacgt 2641 atcagcgcac aggagttcca atctctctca gtgctcgtcc cttggcagtc gcccttttgt 2701 caggtcagta ccctactgat cctcctcttc agactaatgt ttggtacgtg aacactctca 2761 cacctctata ttccaacgat ggtctcttca acaatgtgca gcacgccatg gttgcctctg 2821 aagcttacgc cactttgatc actatgctgg ctcagtgcac tgacatgcag tatccagtgg 2881 atcggccatt gaattggctt cgtcagatta attcggctgc taatgaagcg acgatttttg 2941 gtcgctcaat taattcactt ttccagactg ccttcgacct ctcaccctct acggtgttgc 3001 ttcagccttt cttagagtct gacccacgtg cgacgcatct cgctacttct tacgtgtgct 3061 ataatggtga tagtgagact ttcgtgccaa cagtgcgtcc gtctgtgatc tcagaggcga 3121 cgttgcttgt cgagcgtact ctttcacacg agtacaacct ttttggttta tgccgtggtg 3181 acatcatcct gggacagcat atgactccca ctgcattcaa tcctctggct ccgcctcctt 3241 ctgtcatttt taataggggt gacgctgatg tttatgagtt tggttctcgt agctttgcta 3301 acttcgggat gaatggggaa gagatcttgg tcatggacgc gaacggtgtg cgtcgtccgt 3361 tacttggtcg ttgggttatg ccgctgcagc ttctgatggt gaatattggc gtatttccca 3421 agctactatt ggatcgtatt ctgaaaggac gcttatacat ccggcttgag gttggtgcgt 3481 atccctacac tgtacagtat taccaagggc gtgagttcac ggacggcttt acgctgcttg 3541 agcaatggat gtctaaggtg tcgcctatgg gtatccctcc tgtccccttt ctcatgccac 3601 agtccgaagg acacaacatt acttcaggca tgggcactca ctacatctgg tccactgagt 3661 acaatgacgg gtcgctcttc gccacgaaca ctgacctgcc agttactgta tttggtcccg 3721 accgcaccat cccaattgag cgttaccgcg cactcgttga tccaggcgct ctccctgcca 3781 ccaaccaact gccacacact atcgaccttt actgttccct gagacgttac tatctggaga 3841 cacctcctat cactgctact gtaactactt atggcgacgg actccccgcg ctgaaccatt 3901 agagcggcga ggctagacgc gagctgatcg cgtcgactct cgttggagat tattcatc //