LOCUS AY641737 3958 bp mRNA linear VRL 01-JUL-2005 DEFINITION Avian orthoreovirus strain 916 core protein lambda A mRNA, complete cds. ACCESSION AY641737 VERSION AY641737.1 KEYWORDS . SOURCE Avian orthoreovirus strain 916 ORGANISM Avian orthoreovirus strain 916 Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (sites) AUTHORS Song,C.H., Su,Y.P. and Lee,L.H. TITLE Avian orthoreovirus strain 916 core protein lambda A (L1) mRNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 3958) AUTHORS Song,C.H., Su,Y.P. and Lee,L.H. TITLE Direct Submission JOURNAL Submitted (30-MAY-2004) Department of Veterinary Medicine, College of Veterinary Medicine, National Chung Hsing University, 250 KuoKuang Road, Taichung, Taiwan 402, Republic of China FEATURES Location/Qualifiers source 1..3958 /mol_type="mRNA" /db_xref="taxon:139874" /organism="Avian orthoreovirus strain 916" CDS 21..3902 /codon_start=1 /protein_id="AAV52821.1" /translation="MSSRKVARRRHKDATESKDTKNTTKSKSPANDVKESVNSVTDKK VTVPPPDNPAASTPSSTDGASQTSVAKQTNDNDSSVKESSPKPTVSNDGKDGMHGAVK SQDAKATVAVDNNKDRDVVFGGVGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKA MMEQKQLVAGLPKQPKSANHLCTVCMAQFASADALTIHQTTHSIGSNAALTSFSISTA VEEFIQSWAAATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIVPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETADALTLSVREMWMSRISQMNITPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNWLRQINLAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDADVYEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTID LYCSLRRYYLETPPITATVTTYGDGLPALNH" /product="core protein lambda A" /note="L1" ORIGIN 1 gcttttctcc gaacgccgaa atgagttcgc gcaaagtggc tagacgtcgt cataaggatg 61 ctactgaatc taaggacacc aaaaacacta ctaagtctaa gtcacctgct aacgatgtca 121 aagaatctgt gaatagcgtc acggataaga aagttactgt tccaccgcca gataatccag 181 ccgcctctac tccctcctcc actgatggag cttcacaaac atccgtcgct aagcagacga 241 acgataatga ctcgtcagtt aaggaatcat ctcctaagcc aactgtatct aatgatggga 301 aagatggaat gcatggtgct gtgaaatctc aagatgccaa ggccaccgtc gcggtagaca 361 ataataagga tagagatgta gtatttggtg gcgtaggttc tggtgataaa aatgctatca 421 cgaagactgg ctccgttgac aatgatgggg gtgttaaggt tgttccagct aaggatgcta 481 cgatctcttc ggccaaagcc atgatggagc agaagcagtt agtcgccggt ttgccgaagc 541 aaccaaagtc tgctaatcat ttgtgtaccg tttgtatggc ccagtttgca tcagctgacg 601 ctcttactat tcaccaaact acgcattcca ttggctccaa tgccgctctg acgagcttct 661 cgatctctac tgctgtcgaa gagttcattc aatcatgggc tgctgctacg tccacagcca 721 acactaagac ggccttgact gtgtccgatg tcgactcact aatgatgact gaaggaatac 781 gcctcataac ttgggattct gggttatgta cgtcctttga actcgtccct attgtccatt 841 caaatactgt tcaagatgtc atttcgtact catggtttac atcaagctat aacatcacta 901 ctcccttccc gcaagcaact gtcgtgcgga ttgtcctacg tactaactgg gcggccaaat 961 tggattcccc ttcatcatcg cgtgaatgtg accttcgcct ggccccacct acagagagca 1021 atgctcggtc attttcgatg ttactcaata caggtgctac tccagaaggc accttcaacc 1081 ccaacactct tcgtatgaat gtgcttcaga tgtgtcttca gtatgtccta gccaatttgc 1141 acttgaatcg tagtacgcag tttaccatgg atttgactgc cgcggcccct aacctctctg 1201 cgtctcaact ccgtatcgtt ccagaggata aggaaggtaa atggtttcct gtcatgtatc 1261 catcacgagt gaacattcca ctattcaata agacagctga tttcgtcaat caatgcattc 1321 gtgatcgaat tggtcgatat gatcgtgctc agactttcgc cggtgcgcct tctgaatggg 1381 ctgacatgtg ggaaacagca gacgcgttaa ctctttccgt ccgtgagatg tggatgtcac 1441 gcatttctca aatgaacatc actcccgctg atattgctga cgctatctcc agatgctctc 1501 agtccctgct tactgtcgcc gcgcctacag ctccctccgt ggctcgttta ttgccttggc 1561 gggtcagttc tgatgagagg cagcttctcc aactgttgat gtacttaaat gttggtacta 1621 gtgctgacta tgttcaaccg attttgtctg cattcgctcg gactctatct cgtgtgtcac 1681 cactccgtat caatcctact ctaatcgcta atgccatgtc gacaattgtc gagagtacta 1741 ctaacaccca gagtcccgct gcggctatct tgtcaaaact taaacctgtc gcgtccgatt 1801 tctctgactt cagattagcg tgcgccgcct ggttatataa tggttgcgtc cagacgtact 1861 tgtctgagga ttcatatccg agtagtggtg ggtccgtcac tagcattgat acgctggtgg 1921 atatgttcgt gtgcttatta gcattgcctt tggtcactga tcctaatgct ccgtgtcaag 1981 ctttcatggt cgttgctaac gccatggttg gttacgagaa cctgcctatg gacgatccca 2041 actttactca gcaaagattg gctgcagcgt tcaataatcc tactacctgg cctcaatgct 2101 ttctccatcc tcaaaacatt gatcggcgcc aatgcccaat tctttcatgg tgggctcaac 2161 agattcaccg caattggcct acaccatctc agattactta cggcgcgcct gatatcatcg 2221 gttccgccaa cttattcact ccccctgatg tgttgctgct tccactgcaa cataggccca 2281 ttcgtatcac caatcccacc ctgaactttg ataatgagtt gacgacttgg cgtaacaccg 2341 tagtcgatct agtcctgcgc attatcgaca gtggtcggta tcaacctaat tggaatcagt 2401 ctattcgcgc gtctatgcgg aatgcgatga cgaatttcag gataattaag tcgtacactc 2461 ccgcttacat agcagaactg ctacccgtgg aactggcagc tattgctcct actctaccct 2521 tccaaccttt tcaggtgccg tttgctcgtt tagatcgtga cgctattgtc actcacgtca 2581 atgtgtctag acaagctccc aacaatcttg ctcaacctgc actgaacatg tctatgacgt 2641 atcagcgcac aggagttcca atctctctca gtgctcgtcc cttggcagtc gcccttttgt 2701 caggtcagta ccctactgat cctcctcttc agactaatgt ttggtacgtg aacactctca 2761 cacctctata ttccaacgat ggtctcttca acaatgtgca gcacgccatg gttgcctctg 2821 aagcttacgc cactttgatc actatgctgg ctcagtgcac tgacatgcag tatccagtgg 2881 atcggccatt gaattggctt cgtcagatta atttggctgc taatgaagcg acgatttttg 2941 gtcgctcaat taattcactt ttccagactg ccttcgacct ctcaccctct acggtgttgc 3001 ttcagccttt cttagagtct gacccacgtg cgacgcaact cgctatttct tacgtgcgct 3061 ataatggtga tagtgagact ttcgtgccaa cagtgcgtcc gtctatgatc tcagaggcga 3121 cgttgcttgt cgagcgtact ctttcacacg aatacaatct ttttggttta tgccgtggtg 3181 acatcatcct gggacagcat atgactccca ctgcattcaa tcctctggct ccgcctcctt 3241 ctgtcatttt taataggggt gacgctgatg tttatgagtt tggttctcgt agctttgcta 3301 acttcgggat gaatggggaa gagatcttgg tcatggacgc gaacggtgta cgtcgtccgt 3361 tacttggtcg ttgggttatg ccgctgcagc ttctgatggt gaatattggc gtgtttccca 3421 agctactatt ggatcgtatt ctgaaaggac gcttatacat ccggcttgag gttggtgcgt 3481 atccctacac tgtacagtat taccaagggc gtgagttcac ggacggcttt acgctgcttg 3541 agcaatggat gtctaaggtg tcgcctatgg gtatccctcc tgtccccttt ctcatgccac 3601 agtccgaagg acacaacatt acttcaggca tggtcactca ctacatctgg tccactgagt 3661 acaatgacgg gtcgctcttc gccacgaaca ctgatctgcc agttactgta tttggtcccg 3721 accgcaccat cccaattgag cgttaccgcg cacttgttga tccaggcgct cttcctgcca 3781 ccaaccaact gccacacact atcgaccttt actgttccct gagacgttac tatctggaga 3841 cacctcctat cactgctact gtaactactt atggcgacgg actccccgcg ctgaaccatt 3901 agagcggcga ggctagacgc gagctgatcg cgtcgactct cgttggagat tattcatc //