LOCUS AY641738 3958 bp mRNA linear VRL 01-JUL-2005 DEFINITION Avian orthoreovirus strain 918 core protein lambda A mRNA, complete cds. ACCESSION AY641738 VERSION AY641738.1 KEYWORDS . SOURCE Avian orthoreovirus strain 918 ORGANISM Avian orthoreovirus strain 918 Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus. REFERENCE 1 (bases 1 to 3958) AUTHORS Song,C.H., Su,Y.P. and Lee,L.H. TITLE Avian orthoreovirus strain 918 core protein lambda A (L1) mRNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 3958) AUTHORS Song,C.H., Su,Y.P. and Lee,L.H. TITLE Direct Submission JOURNAL Submitted (30-MAY-2004) Department of Veterinary Medicine, College of Veterinary Medicine, National Chung Hsing University, 250 KuoKuang Road, Taichung, Taiwan 402, Republic of China FEATURES Location/Qualifiers source 1..3958 /mol_type="mRNA" /db_xref="taxon:299807" /organism="Avian orthoreovirus strain 918" CDS 21..3902 /codon_start=1 /protein_id="AAV52822.1" /translation="MSSRKVARRRHKDATESKDTTNTNKSNPSSDAAKESVENATDKK VTAPTPNNPAASTPSSTDGASQTSVAKQTNENDTSIKESAPKPTVSSDGKDGMHGAVK SQDAKATVAVDNNKDRDVVFGGAGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKA MMEQRQLVAGLPKQPKSASHLCTVCMAQFASSDALTIHQTTHSIGSNAALTSFSISTA VEEFIQSWATATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLANLHLNRSTQFTMDLTAAAPNL SASQLRIVPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP SEWADMWETSDSLTLSVREMWMSRISQMNITPADIADAISRCSQSLLTVAAPTAPSVA RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVS RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLT PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVARSLNWLRQINLAANEATI FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDADVHEFG SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY IRLEVGAYPYTVQYYQGREFTDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTID LYCSLRRYYLETPPITATVTTYGDGLPALNH" /product="core protein lambda A" /note="L1" ORIGIN 1 gcttttctcc gaacgccgaa atgagttcgc gcaaagtggc tagacgacgc cataaggatg 61 ctactgaatc taaggatact acgaatacta acaagtctaa cccatcttct gatgccgcta 121 aagaatctgt agaaaatgcc acagacaaga aagttactgc tccaacacca aacaatccag 181 ctgcctctac tccttcctct actgatgggg cttcacaaac atccgtcgct aagcagacga 241 atgagaacga cacttcaatc aaggaatcgg ctcccaagcc tactgtgtcc agtgatggga 301 aggatggaat gcatggtgcg gtaaagtcac aagacgctaa agcgaccgta gctgtagata 361 ataataagga tagagatgtg gtatttggtg gtgcgggttc tggtgacaaa aatgctatca 421 cgaagactgg gtccgtcgac aatgatgggg gtgtcaaggt cgttccagct aaggacgcta 481 cgatatcttc agccaaagct atgatggagc aaagacagct tgttgcaggt cttccgaagc 541 aaccgaagtc cgccagtcat ttatgtactg tttgcatggc ccaattcgca tcatctgacg 601 ctcttactat ccaccagact acgcattcta ttggttccaa tgctgctctg acgagttttt 661 caatttctac tgctgtcgag gaatttattc aatcatgggc tactgccacg tccacagcca 721 atactaaaac ggctttaact gtgtctgacg ttgactcgct gatgatgact gagggaatac 781 gtctcataac ttgggattcc gggttatgca cgtcttttga acttgtcccg attgttcatt 841 ccaatactgt tcaggatgtc atttcttatt catggtttac gtcaagctat aacatcacca 901 ctccctttcc acaagcaact gtcgtgcgaa tcgttttacg caccaactgg gctgccaaac 961 tggattcccc ttcatcgtcg cgggaatgtg atcttcgtct tgccccacct acagagagta 1021 acgctaggtc attctcgatg ctacttaaca cgggagcgac tccagaaggc actttcaacc 1081 ctaacaccct ccgtatgaac gtgctgcaaa tgtgtcttca gtatgttctg gccaacttac 1141 acttgaatcg tagtactcag tttaccatgg atttgactgc cgcggctcct aacctttccg 1201 cgtctcagct tcgtatcgtt ccagaggata aggagggtaa atggtttcct gtcatgtatc 1261 catctcgagt gaacatccca ctattcaata aaactgccga tttcgttaat cagtgcattc 1321 gtgataggat tggccgatat gatcgtgctc agacttttgc tggtgcgcct tctgaatggg 1381 ctgatatgtg ggagacatca gactcgctaa ctctctccgt ccgtgaaatg tggatgtcac 1441 gtatttctca gatgaatatc actcctgctg acattgccga cgccatctcc agatgttcgc 1501 agtctctgct cactgttgct gcacctacgg ctccttctgt ggctcgtttg ttgccttggc 1561 gggttagttc tgatgagagg cagctcctcc aactgttgat gtacttaaat gttggtacca 1621 gtgctgacta cgttcaaccg attctgtcag cgtttgctcg gactttgtct cgtgtgtcgc 1681 cactacgtat taatcccact ctaatcgcta acgccatgtc gacgattgtc gagagcacta 1741 ctaataccca gagtccagct gcggctattt tgtcaaagct taaacctgtg gcctctgatt 1801 tttccgactt cagattggcc tgtgccgctt ggttatataa cggttgcgtt cagacatact 1861 tgtctgagga ctcatatccg agcagtggtg ggtctgtcac cagcatcgat acattggttg 1921 acatgttcgt gtgtttgttg gcgttacctc tggttactga tcctaatgct ccgtgtcagg 1981 cctttatggt tgtcgctaac gccatggtcg gttacgagaa cctacctatg gacgatccta 2041 attttactca gcaaagactg gctgcagcct tcaataatcc taccacctgg cctcagtgct 2101 ttctccaccc tcaaaacatt gatcggcgcc agtgtcccat tctttcatgg tgggctcaac 2161 agattcaccg taattggcct acaccatctc agattactta cggtgcacct gatatcatcg 2221 gatccgccaa cttgtttact cctcctgatg tgttactgct cccattacaa cacaggccca 2281 tacgtattac caatcccacc ctgaactttg ataacgagtt gacgacttgg cgtaataccg 2341 tggttgactt agtcctgcgc attattgaca gcggtcggta ccagcccaat tggaatcagt 2401 ctattcgcgc gtccatgcga aatgcgatga cgaatttcag gattatcaag tcctatactc 2461 ctgcttacat agcggaactt ctacccgtgg aactggcggc tatcgctccg acgttaccct 2521 tccagccttt tcaggtgccg tttgctcgtt tagatcgtga cgctatcgtt acccatgtca 2581 atgtatccag acaagctccc aacaatcttg ctcaacctgc gttgaacatg tctatgacgt 2641 accagcgcac aggagttcca atctccctca gtgcccgtcc cttagcggtt gctcttttgt 2701 caggccagta ccccaccgat cctcctcttc agactaacgt ttggtacgtg aacactctca 2761 cacctctata ttccaatgat ggtctcttta acaatgtgca acatgcgatg gttgcctccg 2821 aggcttacgc tactttgatt actatgctgg cccagtgcac tgacatgcaa taccctgtgg 2881 ctcgctcttt gaactggctt cgtcagatta atttggctgc caatgaggcg acgatttttg 2941 gtcgctcgat taattcgctc tttcaaactg cctttgatct ttcgccttcc actgtgctgc 3001 ttcagccctt cctggagtcc gatccacgtg caacgcaact agccatttct tatgttcgct 3061 ataatggtga tagtgagacc ttcgtgccaa cagtgcgtcc gtctatgatc tcagaagcga 3121 cattactcgt tgagcgcact ctctcgcacg aatacaatct tttcggtctg tgccgtggtg 3181 atatcattct gggacagcac atgactccta ctgcgttcaa tcctttagct ccgcctccgt 3241 ccgttatttt taacaggggt gatgccgatg ttcatgaatt tggctctcgt agcttcgcta 3301 acttcggtat gaatggtgag gagattttgg ttatggacgc gaacggtgtg cgtcgcccat 3361 tacttggccg gtgggtcatg cctctgcagc ttttgatggt gaatattggc gtgtttccta 3421 agctactgtt ggatcgtatc ttgaagggac gcctatacat cagacttgag gttggcgcgt 3481 atccctacac ggtgcagtat tatcagggac gtgagttcac tgacggtttt acgctgcttg 3541 agcaatggat gtccaaggtg tcacccatgg gtatccctcc tgttccgttc ctcatgccac 3601 aatccgaggg acacaatatc acctcaggca tggtcactca ctacatctgg tctactgagt 3661 acaatgatgg gtcactcttt gccacgaaca ccgatctgcc ggttactgtg tttggacctg 3721 atcgcaccat cccaatcgag cgttatcgtg cactcgttga tccaggcgcc cttcctgcca 3781 ctaaccaact cccgcacacc atcgatcttt attgctcact gaggcgttac tatttggaga 3841 cacctcccat cactgccacc gtcactactt atggcgatgg tctccccgcg ctgaaccatt 3901 agagcggcga ggctagacgc gagctgatcg cgtcgactct cgttggagat tattcatc //