LOCUS NC_006553 8289 bp RNA linear VRL 24-DEC-2009 DEFINITION Avian sapelovirus, complete genome. ACCESSION NC_006553 VERSION NC_006553.1 DBSOURCE BioProject accession PRJNA15039 KEYWORDS RefSeq. SOURCE Avian sapelovirus ORGANISM Avian sapelovirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Sapelovirus. REFERENCE 1 (sites) AUTHORS Tseng,C.H. and Tsai,H.J. TITLE Sequence analysis of a duck picornavirus isolate indicates that it together with porcine enterovirus type 8 and simian picornavirus type 2 should be assigned to a new picornavirus genus JOURNAL Virus Res. 129 (2), 104-114 (2007) PUBMED 17686542 REFERENCE 2 (bases 1 to 8289) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (17-DEC-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 8289) AUTHORS Tsai,H.J. and Tseng,C.H. TITLE Direct Submission JOURNAL Submitted (01-MAR-2004) Graduate Institute of Veterinary, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei 106, Taiwan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AY563023. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..8289 /mol_type="genomic RNA" /db_xref="taxon:686983" /isolate="TW90A" /organism="Avian sapelovirus" 5'UTR 1..425 gene 426..7991 /locus_tag="DPTV90A_gp1" /db_xref="GeneID:5076429" CDS 426..7991 /locus_tag="DPTV90A_gp1" /db_xref="GeneID:5076429" /codon_start=1 /protein_id="YP_164335.1" /translation="MASSTSFSCYKNNVTKNECTSFHAPVEMMPRCMQHSAVNHYYCA RHYGKRPNVCCACESIMCGRDVSWAFIKKQARENFYKAYCSEKMKRVPEEVQFQGRLP DCDVTDCLHRVCDHHEGRAKIGDLKTCCFCSRYGEFSDPYDWMVANRRYEWVACNGRQ FPVSQHPACIPDGKVHMRCPLHAGRKSACCTCEHLKMESAIRKTGNTEVKCAEKQGLK SPGSNEPVNVLVGKFHCTDMKYIAPYQIRLHCCDTGDHGICGKHFNNTICCRCLKHLN STSKWDTNQHCCADHEVTKTERRMQIFKTPHCKVVPYMKVVDEEKEMSSSEPMESNWT CVGKYQQSYDFVKQKVSVTKDVDVPDTTREDLFRYGEAIDFPCYFTGRRKSCGPQWKC YHPPGSKRLHWYCSGHYDERPRRYACCACWDDSANVNKDTVKEMWYAFKRNKIACAEK QGQVQSNQTGNSPNVTPVNATNGSQVTTINYYGAQYAQAYNPSSQTMDPSQFTEPMVS LTSAATGIPMLQNPSAEECGYSDRMMQLTAGNSTLITQEAAAGAVIAYGRWPGDTDYS GAAVDLPTRPGPSCDRWYTEDTFYWSKTGLNTTSGGEATGHVVCGGLPGVLIKQGVFG QNCAFHYLWRGGFAVHVQCNASKFHQGMLMVVAIPELEMKNMKPEYFYRWNNYQENPG TTEQAFVPTQLNVFPHQYINLRTNNSATLVLPYVNLCPQSCPVIHSPWVIAIAVMVPL DYSTGATTEVPITVSICPMESEFGGLRNATILQGVPTFQVPGSQQFMTTLRNDGFPVM PDFEKTHSFNLPGRVRNLLEVAQIPTLVTGLKEGTEGWHRPWLVNIEQSMNSGAQIFQ MDMSLMSVNFESTYLGQLARMYAQYRGDVIITLTFCGTAMTTGKILIAYTPPGANPPA DRTEAMLGTHVVWDIGLQSSVTMAIPFISTVQARYTGVEESTLSYCGYITAWLQTKLV HPAGVPTTSPIVVYASASNNFTFKCPIDSAYFQGLGDQITSQVEGLMNSIGGALQLPS TTPGVPQISAPPPSNNEGLTITEGGSGNLTAIETGVAQTSAADVQMATRVTKATFSAQ DTDVEFFFSRYMLIGSVGSRQGTQDFAKFDMSFEAIKGASRAIRTKFQMFTYMRFDLD VVLEPLEEIPYQVMYCPTGSVVPANSIDNWNTTCNAVITQRPGKNVSFRVPFTSPGNF FATAYNGYNTFDLTGGYAQPPNGKLGTVCIRKMKTTQDTFSFLVYVRPVNIEVFCPRP IVTYNTQVAVTRSKYRIVSVPEESPEASRMHTTVFAHKQGPVTFQGLGDWLKNLVSSG GEAFSDGLTRGITSALDDYNAKSSEVTPRTAKWVKTILKWLTRIISSMVIAVRSGGDP GIMAALGVSLGIDILTTDPFDYMKQMILANFGWAHKQGPSDWLKDFNAAINAVKGLDW IATKIQEFIKWLAGVESEVKEKSEKLQNVLDAIPLYISEWDDYEKAKFKYREQSVLDL AEKILESKRVLLEMQKTDNRIYLTLVKYAEKASKFIQNSRKRPFEPIGMLVHGKPGCG KSLLTSILGRQLCKMMGKGEPYSIPPDPDHFDGYTGQEVVIMDDLGQNPDGKDCALLC QMISTTEFIPPMASLEEKGIPFTSKFVLASTNLENLAPITVSEPRAIQRRFQLDLEMT VCDEYKTASGHLDVAKAMKPCEEHESMHFKFCTPFICGKACKIYNRREKKFTTPDLLI GKLTGYRREKINTNDMVDALFQGPRKVVSLKPTLKFLDDEELKTPVKLMPECIEDLIR SVHDQRIIDWCEDQGYIFEPHMQHFIVERESKWLKTVIKTTVTSLAVLGAVCGLIYAA WRLWPTSEQGAYTGNQRAVLKRPELRTVQVQGPGTHPDLQYIQALLNNNIFPIETGSG PYTALGIFERWFVLPKHAVVEPMMVGGKQIDCDDIVELRSNGKMLELVALHCPTLNEF RDIRKHLPESIHGEDGCYLVMNSSVYPRMNTSVGRVSVFGLLNLDMQMTHNTLTYAYP TKTGQCGGVICKAGQVLGIHIGGDGSNGYAASLKRSYFASLQGQIVAERPARKSVNVR STTSLQPSVWHDIVPGEKEPAVLSKFDKRCEVDFEKALFSKYEQNVAVPENENVRTAT LHYLEQIRPLMPENVTEPLPLEDVVYGMEGLEALDLNTSAGYPYCTMGISKKSLIPPK GEPLTRLQEALDLHGTRLPFVTFLKDELRPKDKIKVGKTRLIEASSLNDTIHMKTHLG RLFAVFNQNPGTTTGSAVGCNPDTDWSKFVNMIGHDNICCFDYKNFDASLGSVWFEEV KFILRSLGFDPQITDSMIDHICNSTHIYRNKEYDVEGGMPSGCSGTSIFNSIINNIIV RTLVLDTYKGIDLDQLRILAYGDDLLVSYPFPLDPEALARAGKVYGLKMTPADKSEHF DGPKKIWEVTFLKRGFKPDSRYPFLIHPVYPMDQVYESLRWTRKPSETQQHVRSLCEL AWHNGEEEYNNFLSIVRSTPVGRALTLPAYQVMCQKWYDSF" /product="polyprotein" mat_peptide 426..1778 /locus_tag="DPTV90A_gp1" /protein_id="YP_164820.1" /product="leader" /note="L" mat_peptide 1779..1985 /locus_tag="DPTV90A_gp1" /protein_id="YP_164821.1" /product="VP4" mat_peptide 1986..2744 /locus_tag="DPTV90A_gp1" /protein_id="YP_164822.1" /product="VP2" mat_peptide 2745..3473 /locus_tag="DPTV90A_gp1" /protein_id="YP_164823.1" /product="VP3" mat_peptide 3474..4310 /locus_tag="DPTV90A_gp1" /protein_id="YP_164824.1" /product="VP1" mat_peptide 4311..4346 /locus_tag="DPTV90A_gp1" /protein_id="YP_164825.1" /product="2A" mat_peptide 4347..4670 /locus_tag="DPTV90A_gp1" /protein_id="YP_164826.1" /product="2B" mat_peptide 4671..5669 /locus_tag="DPTV90A_gp1" /protein_id="YP_164827.1" /product="2C" mat_peptide 5670..5978 /locus_tag="DPTV90A_gp1" /protein_id="YP_164828.1" /product="3A" mat_peptide 5979..6044 /locus_tag="DPTV90A_gp1" /protein_id="YP_164829.1" /product="3B" mat_peptide 6045..6599 /locus_tag="DPTV90A_gp1" /protein_id="YP_164830.1" /product="3C" mat_peptide 6600..7988 /locus_tag="DPTV90A_gp1" /protein_id="YP_164831.1" /product="3D" 3'UTR 7992..8226 ORIGIN 1 ccccccccca taccttttcc ccctctttaa cggcaatggt taatggacta aggataaagg 61 attatggact tatatgatgt gcccgacatg gaattcggga aatctggatc taagggttac 121 ctcaaaggta gtgaaattcc ctcgcagggg tatagtagct agctttgtgc cttagtgaag 181 ggaccgtgtg ttctagacat ggtagttgtg taggtacaag aggacttcat ttgaatatcc 241 tcgatcccgg acctaaatta ccttgtggat ttccggagga atttaggaaa ccacctcctt 301 cgggaggcta gtaggagctt acatgactct cggattggga agtccgagct ggaccatgac 361 tgggtgatag cctgccggct ggcgcagttc acatggtata gtcagttgaa aataaataga 421 aaatcatggc atcctcaact tctttttctt gctacaaaaa caatgtaact aagaatgaat 481 gtacctcatt ccacgcacct gtggaaatga tgcctcgatg catgcaacac tctgcagtta 541 accattatta ttgtgctagg cactatggaa aaagacctaa cgtgtgttgt gcatgtgaga 601 gtataatgtg tgggagagat gtatcatggg ccttcattaa gaaacaagcc agagaaaatt 661 tttacaaggc ctattgttct gagaagatga agagggtccc agaagaagtt cagtttcaag 721 gcaggctgcc tgattgtgac gtcacagatt gtcttcacag ggtatgtgac catcacgaag 781 gaagagcaaa aattggtgat ttgaaaacat gctgcttctg cagtaggtat ggagaattta 841 gtgatcccta tgattggatg gtcgccaata ggagatatga atgggttgct tgtaatggta 901 gacagtttcc agtgtctcaa catcctgcct gtattccaga tggaaaggtc cacatgcgat 961 gcccattgca tgctgggaga aagagtgcat gttgcacttg tgaacacctc aaaatggaga 1021 gtgcaattag gaaaacaggc aacactgagg tcaagtgtgc tgagaagcag ggattaaaat 1081 ctccaggatc aaatgagcct gtcaatgtcc ttgtagggaa gtttcattgc actgacatga 1141 agtacatagc cccgtatcag attaggctcc actgttgtga cactggtgac catggaattt 1201 gtggaaaaca ctttaataat actatttgtt gtagatgtct caaacacctc aattcaacaa 1261 gtaagtggga cacaaaccaa cattgctgtg cagatcatga agtcactaaa acagaaaggc 1321 gaatgcagat tttcaaaacg cctcactgta aagtggttcc atacatgaaa gttgttgatg 1381 aagaaaagga aatgagttcg agtgagccta tggaatctaa ttggacatgt gtgggtaaat 1441 accagcagag ttatgacttt gtgaaacaga aggtgagtgt caccaaggat gtagatgtgc 1501 cagacacaac aagggaggac ctcttcagat atggagaagc tattgatttc ccctgttatt 1561 tcactggtcg aaggaaaagt tgtggcccac agtggaagtg ttaccatcct ccagggagca 1621 aaagacttca ttggtattgt tcaggacact atgacgagag accacgccgg tacgcgtgtt 1681 gtgcgtgctg ggatgacagc gcaaatgtaa acaaagacac tgtcaaggaa atgtggtatg 1741 cctttaagag aaataagatt gcatgtgctg aaaagcaagg tcaagtgcaa tccaatcaaa 1801 ctggcaattc tccaaatgta acaccagtta atgccactaa tgggtcacaa gtaacaacta 1861 ttaattacta tggggcacaa tatgcacagg catataatcc atccagtcag acaatggatc 1921 catcacagtt tactgaacca atggtaagcc taacatctgc tgcgacagga attcccatgt 1981 tacagaatcc atcagcagag gagtgtggat attcagatag gatgatgcaa cttacggctg 2041 gtaactccac actcattaca caggaagctg cggctggtgc tgtgattgca tatggtagat 2101 ggcctggaga tacagactat tctggagctg ctgttgactt gcctacaaga ccaggtccct 2161 catgtgacag atggtatact gaagacacct tttactggtc aaaaactgga ttgaatacaa 2221 cttctggtgg tgaggcaaca gggcatgttg tttgtggtgg cttacctggt gttctcataa 2281 aacaaggtgt ctttggtcag aattgtgcat tccattacct ttggagagga gggtttgctg 2341 ttcacgtgca gtgtaatgca agtaagttcc atcagggaat gttgatggtt gtggcaatac 2401 cagagcttga gatgaagaat atgaaaccag aatatttcta taggtggaat aattaccaag 2461 agaacccagg gacaacagaa caggcttttg ttccaacaca actgaatgtc tttccacatc 2521 agtatattaa tctcaggact aacaatagtg cgacactggt gttgccttat gtaaatttgt 2581 gcccacaatc ttgtccagtt atacacagtc cttgggtgat tgccattgca gtgatggtac 2641 cactagatta tagtacagga gcaacaacag aagtccccat tacagtgtca atttgtccaa 2701 tggagagtga gtttggaggt ctgagaaatg caactatctt acaaggagtg ccaaccttcc 2761 aagtacctgg atcacagcag tttatgacaa cactgagaaa tgatggattc ccagttatgc 2821 cagactttga aaagacacac agtttcaacc tccccggaag ggttaggaac cttctagagg 2881 ttgcacaaat accaacattg gtaactggtt tgaaagaagg aactgaggga tggcatagac 2941 cttggctagt aaatattgag cagagtatga attctggtgc acaaattttc caaatggata 3001 tgtcactcat gtcagtcaat tttgaatcta catatttggg acaattggct agaatgtatg 3061 cacaatatcg gggtgatgtc ataataactc tgacattctg tggaacagca atgacaactg 3121 gtaagatcct cattgcttac actcctcctg gagcaaatcc acctgctgat agaacagaag 3181 ctatgttggg aacccatgtg gtctgggaca ttggattgca atcttcagtc acgatggcaa 3241 ttccttttat atccacagtg caggcaagat atactggggt tgaagaatct acactgtctt 3301 actgtgggta cataacagcc tggctacaga caaaattggt tcatccagct ggtgttccaa 3361 ccaccagtcc cattgtagtg tatgcttcag ctagtaataa cttcaccttc aagtgcccaa 3421 tagatagtgc atacttccag ggacttggtg accaaataac ttcacaagtg gaagggttga 3481 tgaactcaat tggtggggct ttgcaactcc cctctacaac accaggagtc ccacagatta 3541 gtgcaccccc accgagtaat aatgaagggt taaccatcac tgagggaggc agtggcaact 3601 taacagcaat tgaaacaggt gtagcccaaa catctgctgc agatgtccaa atggcaacta 3661 gagtcacaaa ggcaacattt tctgcacaag acactgatgt agagtttttc ttctcaaggt 3721 atatgcttat aggatctgtt ggaagtcgac aaggaaccca ggactttgcc aaatttgaca 3781 tgtcttttga ggccattaag ggagctagta gggcaattag aacaaaattt cagatgttta 3841 catatatgag gtttgacttg gatgtggttc tggagccgct agaagagatt ccttatcagg 3901 tgatgtactg ccccactggg tcagttgtac cagcaaactc tatagataat tggaacacaa 3961 cttgtaatgc agtgattact caacgacctg gtaagaatgt ttcatttaga gtaccattta 4021 cgtcaccggg gaatttcttt gccacagctt ataatggtta caatacattt gatttgactg 4081 gtggttatgc acagccccca aatgggaaac ttggaacagt ttgtattagg aagatgaaaa 4141 caactcagga caccttttcc ttccttgtct atgttagacc agtgaacatt gaagtgtttt 4201 gcccaagacc aattgtcaca tataatacac aggtggcagt aaccagatca aaatatagga 4261 tagtttcagt tccagaagag agcccagaag caagtagaat gcacacaact gtgtttgcac 4321 acaaacaagg acctgtgaca ttccagggat tgggagactg gttgaaaaat cttgtttcat 4381 ctggtggaga agcattctct gatggtctaa caagaggcat aacatcagcc cttgatgact 4441 acaatgcaaa atcaagtgag gttacgccga gaactgccaa gtgggtgaaa actatcttaa 4501 aatggttaac aaggataatt tcatcaatgg taatagcagt tagatctgga ggagacccag 4561 gaattatggc tgcactaggt gtgtcccttg gaattgacat tttgaccact gatccatttg 4621 actacatgaa gcagatgatt ttagcaaact ttggatgggc acacaagcaa ggacctagtg 4681 attggctcaa ggacttcaat gctgccatta atgctgtcaa gggcttggat tggattgcaa 4741 caaaaattca ggaatttatt aagtggttgg ccggtgttga aagtgaagtc aaagagaaga 4801 gtgagaagct ccagaatgtt ttggatgcca ttccgctgta cataagtgag tgggacgact 4861 atgagaaggc aaagttcaag tacagagagc aatcagtttt ggatttggct gagaaaatac 4921 ttgagtcaaa gagagtgctc cttgagatgc agaagacaga caataggatt tacctcactt 4981 tggtgaagta tgctgaaaag gccagtaaat tcattcagaa ttcaaggaaa agaccatttg 5041 aaccaattgg aatgcttgtt catggaaaac ctgggtgtgg aaagtcactt ttaacatcaa 5101 ttttgggaag acaattgtgt aagatgatgg gtaaaggaga gccatactct attccaccag 5161 atccagatca ctttgatggg tacacaggtc aagaggttgt gataatggat gacttgggac 5221 agaatccaga tggaaaagat tgtgctctgt tgtgccaaat gatttcaacg acagagttta 5281 ttccacccat ggcaagtcta gaagagaaag gcataccttt tacatcaaag tttgtcttgg 5341 cctcgaccaa cctggagaac ttggcaccga taactgtgtc agagcctagg gcaattcaga 5401 ggagattcca actggatttg gagatgacag tgtgtgatga gtacaagaca gcatcaggac 5461 acctcgatgt ggctaaggca atgaaaccat gtgaagaaca tgagtcaatg cacttcaagt 5521 tttgtacacc attcatttgt ggtaaggcct gcaagattta caatagaaga gagaagaagt 5581 ttaccactcc tgatttactg attggcaagt tgactggtta cagaagggag aaaattaata 5641 caaatgacat ggttgatgca ctgtttcaag ggccgaggaa agttgtaagt ctgaaaccta 5701 ctctcaagtt cctggacgat gaagaactca aaactccagt gaagctcatg ccagagtgca 5761 ttgaagatct cattagaagt gtgcatgacc aacgcatcat tgactggtgc gaagaccagg 5821 gatacatttt tgaaccacac atgcagcact ttatagtaga gagagagagt aaatggctga 5881 agacagtaat aaagactaca gtcacttctt tggctgtttt gggagctgtg tgtggattga 5941 tctatgcagc ttggagactc tggccaacat ctgagcaagg agcatacact ggaaatcaga 6001 gagctgtttt gaaaagacct gagttaagaa cagtgcaagt gcaggggcct ggaactcatc 6061 cagatcttca gtatatccag gcattgctca acaataatat cttcccaatt gagactggat 6121 ctggaccata cacagcctta ggcatatttg aaagatggtt tgttctccca aaacatgctg 6181 tggtggagcc aatgatggtt ggtggcaaac aaattgactg tgatgacata gtggaattga 6241 gatcaaatgg aaaaatgctt gaactcgttg cccttcattg cccaacattg aatgagttca 6301 gagatattag aaaacacctg cctgagtcaa ttcatggaga ggatggttgt tatctggtga 6361 tgaattctag tgtgtatcca agaatgaata catctgtggg gagagtgtca gtctttggct 6421 tgctgaacct ggatatgcag atgactcaca atacactcac ttatgcctac ccaactaaaa 6481 caggacaatg tggtggtgtc atttgtaaag caggacaagt attggggatt cacattggtg 6541 gtgatggttc aaatggatat gctgcatctc tcaaaaggtc atactttgca tctcttcaag 6601 gacagattgt ggctgagaga cccgccagga aaagtgtcaa tgtcagatcg acaacttcac 6661 ttcaaccatc ggtttggcat gacattgttc caggtgagaa ggaacctgca gttttgagta 6721 agtttgacaa gagatgtgag gtggactttg agaaggctct attctccaaa tacgagcaga 6781 atgtggctgt ccctgaaaat gaaaatgtga gaacagcaac tctccattat ctggaacaga 6841 taagaccact gatgccagaa aatgtgacag agccactacc actcgaggat gtagtctatg 6901 gcatggaagg actggaagct ttagatttga atacatctgc tggataccct tattgcacca 6961 tgggtatttc aaagaaatca ctgattccac caaagggaga gcccttgact cgtctacagg 7021 aagcgcttga ccttcatggc acaagattgc cttttgttac tttcttgaag gatgagttgc 7081 gacctaagga caagattaag gttggaaaga caagattgat tgaagcctcc agtttgaatg 7141 acactattca catgaagaca catcttggac gcctgtttgc tgtgttcaat caaaatccag 7201 gtacaacaac aggttcagca gttgggtgca atccagacac tgattggtca aaatttgtca 7261 atatgattgg acatgataac atctgttgtt ttgattataa gaactttgat gcctctcttg 7321 gatctgtgtg gtttgaggaa gtgaaattta ttttgagaag tctaggtttt gacccgcaga 7381 ttacagattc aatgattgac cacatctgca attcaacaca catttacaga aataaggaat 7441 atgatgtgga aggtggaatg ccatcagggt gctcgggaac ctccatcttc aattcaatca 7501 ttaataacat cattgtgaga actctggtct tggacaccta caaaggtatc gatctcgacc 7561 aactccgtat tctggcctac ggtgatgacc tactggtgtc ctatccattt ccacttgacc 7621 cagaggcatt agcaagggct ggaaaggtgt atggtcttaa aatgacacct gcagacaaga 7681 gtgaacactt tgatgggcca aagaaaatct gggaggtgac cttcctgaag aggggcttta 7741 agcctgattc tcggtaccca tttctcattc atccagtgta cccaatggat caggtgtacg 7801 agtctctcag atggactagg aaaccttctg aaacacaaca acatgtgagg tcattgtgcg 7861 aattggcctg gcacaatggc gaagaggagt ataacaactt cctgagcata gtaagatcaa 7921 cccctgttgg aagagctctt accttacctg cctatcaggt aatgtgccag aaatggtatg 7981 actccttttg accctctctg ctttgcagga gggtcaagtg tattggtgtg gctagccaaa 8041 gggaatagcc cctcctaatg aggttgttgg gcgcggcgtc ccaactcaaa caaaacgcgt 8101 cggataattt cttaacacat aatcacttta atcattagtt gttaggattt taatcattag 8161 tttagatata gtttgttagt tgataattag atttgtgatt agtttaattg ttgattggca 8221 ttttataaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 8281 aaaaaaaaa //