LOCUS HQ654774 7775 bp RNA linear VRL 20-JUN-2011 DEFINITION Duck hepatitis A virus strain JS2010, complete genome. ACCESSION HQ654774 VERSION HQ654774.1 KEYWORDS . SOURCE Avihepatovirus A (DHV-1) ORGANISM Avihepatovirus A Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Avihepatovirus. REFERENCE 1 (bases 1 to 7775) AUTHORS Cao,R., Su,X. and Chen,P. TITLE Molecular characterization of a new serotype of Duck hepatitis A virus isolated from Jiangsu China in 2010 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7775) AUTHORS Cao,R., Su,X. and Chen,P. TITLE Direct Submission JOURNAL Submitted (26-NOV-2010) College of Veterinary Medicine, Nanjing Agriculture University, Tong Wei Road No. 6, Nanjing, Jiangsu 210095, China FEATURES Location/Qualifiers source 1..7775 /mol_type="genomic RNA" /country="China" /collection_date="18-Jul-2010" /host="duck" /db_xref="taxon:691956" /strain="JS2010" /serotype="1" /organism="Avihepatovirus A" CDS 652..7407 /codon_start=1 /protein_id="AEI25500.1" /translation="MDTLTKNIEDETVKIIGSCAEKAQEAISGLGAVESVASTNSVVA TANATTTQTIPDPTDGSTDDFYSCSYEVGAQGDNISRLVHLHTGQWSTQHGVTTCLRW LATPGCFYTVNTQPAYGQTRYFRFIRCGYHFRLLVNAPSGAAGGLMMVWMPYPYCRVL TGSYNVDASVDRRSLLNLPYAILDLRTNTEIDLVIPYVNFRNYVEITATDSVGGAICV FVLGAFTHGSGTSNTVDYTLFGEMLETDLQCPRPFNDQGKKKPRRRPIHKPKSPPQES RIIIQPGPGAANLSNSSVVTMAESVALANEGTAVDYSTAGCASSVDDVVMVLRRWQIV GDFQWANTVTPGNRINRFQVVFNRMPTFALFFDKFQYWRGSLEVKLLTFGSQFNTGRY QMSWYPVSNGEQTLAQCQNSVFVTCDVCATPATLILPFTNTTWRKSTRENYGYITWHV VNRLTVNSTSPSTISCVILMRVGKDFQFTAPLYGALQMAANNQGDSNQLGDDEPVCFL NFETANVPIQGESHTLVKHLFGRQWLVRTVQHTSEVQELDLPVPDQGHASLLRFFAYF SGEVILTIVNNGTTPCMVAHSYTMDNLTSEYAVTAMGGILIPANSAKNINIPFYSVTP LRPTRPMPVFQGGGLTFGRLYIWTQSGSVSIFMGLHKPALFFPLPAPTYTTHTQLNKI ETMNLHNQSDQPDCHLCKICKKMKKWSRNHRPFRFCLRLKTLAFELHLEIESDQSRNV RDLTTEGVEPNPGPIMIVGKSGSGKSALCNILADVNLFESKLTPYTLTTTHQIETVAI CGKQVTLIDTPEIPKHDGPITCFLYLIEAGRFTNEDVIFMKTMRQYFPGFEKSTILVL NRADELLNNDQLKDWIKTNGELESLVRACDGRVAKFYRGKIATSKLLDKIAELPEYRA HLPRLVYKDRKMYRHYGVQCGNVVFHMDSENIMKSALNGEVTIKQEKWNGNWKPASEH MQSTASIYLKSDTMPKFKFSVDDNCETWARQLLGDYGPTQGTILKERLMWAVALGFFM TMKITTDQSFPGKDAIHTVLTKISNFIFGGLENEVVRIVIRTVIRIVCYLILYIHSPN IVTTGTLVALLALDATSMSMDQGLKTLCMSLVDGDFGKFCSVLLQKIQSVDGADLKNT IPLFTDMMEDQSGKPTGPKTFNDWTTCAKNVQWWLESFIKVVNWLKEKVFPSKTDPTL QWLEDHEEHISIMLALCDEHLCMLRTDKDYICEHTTRPKHQKLVEMVSNTLNQLNGIS SAKDLCLRLQHVLNKLHQVNFEPELEWTHRPEPLGIWISGGPGVGKSFLSNYIVKQIA KKRHWKSYAIPTGSKHMDGYVSQEIHVFNDFGQNREEEDYSLICNLISSVPFITPKAS VEAKGTQYRGRLVVVTTNRRDFTSCKLTDPDALERRFPIRLNIRPLQKYNHKGRLDVA TAMRDGSLQNGTCWERDIGGLGLEHWNPINGDTLIDEILSELQVRQEVASFMNQGKVR RLSDLDTMFEELDELKLDFDFDRLEEQARLFARPKEGKISKFRTWVKECINKIKGFLE RNRAWILGIGTLGTIVSLITMCIPLARKFTQSIYSTQPMAKTLPKDFKVAVQKHVEKL ESVLQDQGGRVNFRHICNRLVNVSSENEVATGLAVGGKYVLTFGHSKFTQLDSIRDMV FNSPAKGTPITYDGLPTDLQLLDCDIPHQFKDVSKLIATDDYRGNGWLVWKDDDQYII QEVTKIRPFGQTTTASGTTSCQTYIYNCKTGPGSCGGVLVALVGGNLKILGIHTSGNG TMGASNRIFPVFNQGAIVEKKYSGKILYHQPRKTAYQKSPVYEDSPYEPAVLSINDQR LAVPIEDMAKKASDKYIGNTFAPPLPAFQLAKTHVAEKLAKVLGSHGCVSYEQAISSD VIPMNWDTSPGIKYKGETKRQLVCKSSFKQDVMDQIQSPSTVFVCYLKDELRKKEKIK EGKTRGIEACNFDYTVAFRMVMGEIYSNIYDDSFILSGCAVGINPFAEWDNLLANLQP YNLCLDFSGFDGSLSAQILEEAVDVLSFFHNDPALVKKIHEPTIYSTHYVTDEIWKVE GGMCSGSPCTTVLNSIVNQLACYTVLAVLGYDINQCYVVSYGDDCVLSVPEKRDISKL SHYFKLFFGMTATASDKASDIAWRGPMEIEFLKRTPAFLPDTRKVVGVLDKEVLEGKI QWCKGPEAFKQQLDSFFLEAALHGPEYYNYICSKLKARCPVLEIQPWGVARMRAYTAC MII" /product="polyprotein" ORIGIN 1 tttgaaagcg gctgtggtgt agaccatttt ctggcgcttg gctcagccag tatggtctca 61 ccacagtctg cttggggtta ttcccaaacc ccttaattca acgcctagtc ctagcgatat 121 aggactccct atccacttgt tttaccttta ccctccacta tatagtctgt tttctggcta 181 ttgactttgg cttttgtttt tgacccacgt ctaagtctca atggattttg tagtggttag 241 cctaccaccc cttggccact aattcttggc tttctgtttt gggatccacc atatcttgga 301 ggtggtgctg aaatattgca agccacttgg tatgtgtgtg ttttccaaac atgaagcttt 361 ggtgcagtgg ttttggacaa ggaaaggcta gtgtttggtc tggatataaa cccttgttgt 421 gaaacggatt accggtagta gcatctagtg gttccagtcc ataacatgag tgtatggtct 481 agagtggaca tagcttggat acagacatct tcagtattac tgggtgttcc agactagttc 541 ctgaggtacc aagttatgag gggctatggg aaaacccctt tgatccacac tgcctgatag 601 ggtcgcggct ggtcgagtcc catacactat aaaaccagtt gatttcatgc aatggacact 661 ctaactaaaa acattgaaga tgaaactgtc aagattattg gatcctgtgc tgagaaggca 721 caagaagcaa tctctggtct tggagcagtt gagagtgttg cttcaactaa ctctgtggtt 781 gctactgcaa atgctacaac aacacaaacg attcctgatc caacagatgg ttccacagat 841 gacttttatt catgttccta tgaagttggg gcccagggtg acaacatctc acgtttggtc 901 catctacaca ctggacagtg gtccacacag catggtgtca ctacatgcct tagatggttg 961 gccactcctg gatgttttta tacagttaat acccaaccag catatggaca aaccaggtat 1021 tttaggttca tcagatgtgg ctaccacttc cgccttcttg tgaatgcacc atctggtgct 1081 gctggtggac taatgatggt gtggatgcct tatccatatt gccgggttct cactggatct 1141 tacaatgtgg atgcatcagt agatcgcagg tcgttgttga atcttcccta tgccatcttg 1201 gatctgcgca ccaacactga aattgacttg gttattccat atgtaaattt tagaaattat 1261 gttgaaatta ctgccacaga tagtgttggt ggggccatat gtgtctttgt gttgggagct 1321 tttacacatg ggtcaggaac ctccaatact gttgattata ctctctttgg cgagatgctt 1381 gaaactgact tacaatgtcc tcggcccttt aatgaccagg gtaagaagaa accacggcgg 1441 aggccaattc ataaaccaaa gagccctcct caagaatctc gcatcattat tcagcctgga 1501 ccaggagctg caaatctatc taattctagt gtggttacca tggctgagag tgtggctcta 1561 gctaatgagg gtactgcagt tgactactca acagctgggt gtgcatcatc tgtggatgat 1621 gtagtcatgg tgcttagacg ctggcagatt gtgggtgatt ttcagtgggc taacacagtg 1681 acccctggca atagaattaa taggtttcag gtggttttca atcgaatgcc aacctttgct 1741 ctcttttttg ataagttcca atattggagg gggtccctgg aggttaaatt attgaccttt 1801 ggaagccagt ttaatactgg ccgctatcag atgtcatggt accctgtctc taatggagag 1861 caaactctcg cccagtgcca gaactctgtg tttgtcacct gcgatgtttg tgctacacca 1921 gccactctca tcttgccctt caccaatacc acatggcgta aaagcacacg tgaaaactat 1981 ggctatataa cctggcatgt tgtgaatcgc ctaacagtta actcaacatc tccatctaca 2041 atcagctgtg tcattctgat gcgagttggt aaggattttc agtttacagc tcccctgtat 2101 ggggccctgc agatggctgc caataaccag ggtgattcca atcagcttgg tgatgatgaa 2161 ccagtgtgtt ttctcaattt tgagactgca aatgtgccaa tacaagggga gtcgcacacc 2221 ttggtgaaac atctctttgg tcgtcaatgg ctggttcgta ctgttcaaca tactagtgag 2281 gtacaagagt tggatttgcc agtacctgac cagggtcacg catctctgtt gcgcttcttt 2341 gcctacttct ctggagaagt gattctgacc attgtcaata atggaacaac accatgcatg 2401 gttgcacact cttatacaat ggacaatctc acttctgaat atgctgtcac tgccatgggg 2461 ggtattctta tcccagcaaa ctctgccaag aatattaata ttccatttta ttctgttaca 2521 cctttacgcc ctacacgacc catgccagtg tttcaggggg gtggtttgac ttttggcagg 2581 ttgtatatct ggacacaatc aggaagcgtt tctattttta tgggcctcca caagccagct 2641 ttgttttttc cactgcctgc accaacttac acaacacaca cacagttgaa taagattgaa 2701 accatgaatc tgcataatca atcagatcag ccagactgcc atctgtgtaa gatttgcaag 2761 aaaatgaaga aatggtctcg caaccatcgc ccatttcgct tctgtttgag acttaaaaca 2821 cttgcctttg agctccatct agaaattgaa tcagaccaat ctcgaaatgt cagagacctc 2881 actactgagg gtgttgagcc caacccaggc cccattatga ttgttggtaa gtcaggatct 2941 ggcaaaagtg cattgtgtaa catattggct gatgtaaatc tttttgagtc taaattaact 3001 ccttatacac tcacaacaac gcatcagatt gaaactgtgg ctatctgtgg caagcaagtg 3061 accctaattg atacaccaga aataccaaaa catgatggcc caattacttg tttcctttac 3121 ctcattgaag ctggccgctt taccaatgag gatgttattt ttatgaagac aatgaggcaa 3181 tatttccctg gttttgaaaa atctaccatt ttggtcttaa atagggctga tgaattactc 3241 aataatgatc agctcaagga ctggattaaa actaatggag aattagaatc acttgttcgt 3301 gcctgtgatg gccgggttgc caaattttat cgtggtaaga ttgccactag caagcttttg 3361 gataaaattg cagagttgcc tgagtatcgt gctcacttac cgaggttggt ttacaaagat 3421 agaaaaatgt atcgtcacta tggtgtgcag tgtggcaatg ttgtgttcca catggattct 3481 gagaatataa tgaaatctgc actcaatgga gaggtcacca tcaaacaaga gaagtggaat 3541 ggcaattgga aacctgccag tgagcacatg caaagcacag catcaatcta tttaaaatct 3601 gacacaatgc caaaatttaa attttctgtt gatgataatt gtgaaacttg ggcaagacaa 3661 ttgctgggtg attatggtcc cacacaggga acaatcttga aagagcgtct tatgtgggct 3721 gtagcattgg gtttttttat gacaatgaaa attacaactg accaatcatt tcctgggaaa 3781 gatgccatac acactgtttt gaccaaaatt tctaacttta tttttggtgg tcttgaaaat 3841 gaagtggtga gaattgtcat ccgcacggtg atacgcattg tctgttatct aattttatat 3901 attcattcac caaatattgt taccacaggg acattggttg cattgcttgc cttagatgcc 3961 actagcatga gtatggacca gggcctcaag actctctgta tgagtttggt tgatggggat 4021 tttggaaaat tctgttcagt cttgttgcaa aaaattcaat ccgttgatgg ggctgacctt 4081 aaaaacacca ttcccttatt cacagatatg atggaagatc aatcaggcaa acccactggt 4141 cctaagacat ttaatgattg gaccacatgt gcaaaaaatg ttcaatggtg gttagaatct 4201 tttataaaag ttgtgaattg gctaaaagaa aaagtatttc catccaagac tgaccccact 4261 ctacagtggc ttgaagatca tgaggagcat atttctatta tgttagcact gtgtgatgaa 4321 cacttgtgca tgctccggac tgataaggac tatatttgtg aacacaccac tcgtcctaag 4381 catcaaaaat tagttgagat ggtttctaac actttgaatc aattaaatgg catttccagt 4441 gctaaagatt tatgcttaag attgcagcat gtcttaaata agctccacca ggtcaatttt 4501 gagccagaat tggaatggac acaccgaccc gaacctcttg gtatttggat ttcaggtggg 4561 ccgggtgttg ggaagagttt cttatccaac tatatagtca aacaaatagc aaagaaaagg 4621 cattggaagt cttatgcaat tccaacaggg tcaaagcata tggatgggta tgtttcacag 4681 gaaattcatg tctttaatga ttttggccag aatcgtgaag aggaggatta ctctctcatt 4741 tgtaatttga tttctagtgt tccctttata acaccaaaag ccagtgttga agccaaaggc 4801 acccagtatc gtggcagact tgtagtagtt accactaaca ggagagattt cacttcatgt 4861 aaactcaccg atcctgatgc gttagagcgt aggtttccaa tccgacttaa tattaggccc 4921 cttcagaaat ataatcataa aggtaggttg gatgttgcta ctgcaatgag ggatggcagc 4981 ctgcagaatg gcacttgctg ggagcgtgat attggtgggt tgggccttga acactggaac 5041 ccaattaatg gagacacact tatagatgag attctctcag agttgcaggt tagacaggaa 5101 gtagccagtt ttatgaatca gggcaaggtg cgtaggctaa gtgatttgga cacaatgttt 5161 gaagaattgg atgaattaaa acttgatttt gattttgacc gcttggagga acaggccaga 5221 ctcttcgccc gcccaaagga aggtaaaatc tccaaattta ggacctgggt gaaagaatgt 5281 atcaataaga tcaaaggctt ccttgaacgt aatagagctt ggatacttgg aattggaaca 5341 ctcggcacca ttgtgtccct cataacaatg tgtattccat tggctcgtaa atttactcaa 5401 tctatctatt caactcaacc aatggctaag actctaccaa aagactttaa agtggctgtg 5461 cagaagcatg tagagaagct tgaaagtgtg ctccaggacc agggtggtcg tgtgaatttc 5521 cgccacatat gtaatagatt ggtcaatgtc tctagtgaaa atgaagttgc cacgggattg 5581 gcagttggtg gcaagtatgt cttaactttt gggcattcta agtttactca attggattcc 5641 atcagggata tggtctttaa ttcacctgct aaaggaacac cgatcactta tgatgggcta 5701 ccaacagatc tccaactctt ggattgtgat ataccccacc aatttaaaga tgtgtctaag 5761 ctcatagcta cagatgatta tcgaggcaat ggctggttag tgtggaaaga tgatgaccaa 5821 tatataattc aagaggttac taaaatcaga ccctttggac aaactaccac tgcttctggc 5881 acaacatcat gccaaacata tatttataat tgtaaaacag gccctggttc atgtggtgga 5941 gtgcttgtag cccttgttgg aggaaaccta aaaattcttg ggatccacac cagtggtaat 6001 ggtacaatgg gtgcaagtaa tcgcatcttc cctgtgttta atcaaggagc cattgttgag 6061 aaaaagtatt caggaaagat cctctatcac cagccccgta agactgctta tcaaaaatca 6121 ccagtctatg aggattctcc ttatgaacct gctgttcttt ctatcaatga ccagcgcctt 6181 gcagtaccaa ttgaggatat ggcaaagaaa gctagtgaca aatatattgg aaatacattt 6241 gccccaccac taccagcttt tcaattggca aaaacacatg tggctgaaaa attggctaaa 6301 gtgctgggct ctcatggttg tgtatcttat gagcaggcca tttctagtga tgtaatacca 6361 atgaattggg acacctctcc aggaattaag tataaaggtg agacaaagcg ccagctggtg 6421 tgtaaatctt cttttaaaca ggatgttatg gatcagattc agtctccatc tacagtgttt 6481 gtgtgttatc tcaaagatga gctacgtaaa aaggagaaaa ttaaggaagg aaagactcga 6541 ggtattgagg catgcaactt tgactacaca gttgcgtttc gcatggttat gggtgaaatt 6601 tattccaaca tttatgatga cagcttcatt ttatcaggct gtgctgttgg aatcaaccct 6661 tttgctgagt gggacaatct gttagcaaat ttgcagcctt acaacttgtg tttggacttt 6721 tctggttttg acgggtctct gagtgctcaa attttggaag aagctgttga tgtgttatca 6781 ttttttcaca acgatccagc ccttgtgaag aaaattcatg agccaaccat ttattcaaca 6841 cactatgtca ctgatgagat ctggaaggtg gaaggcggta tgtgctcagg atcaccctgc 6901 accactgtcc taaattcaat tgtgaaccag ctggcatgtt atactgtgct tgctgtgttg 6961 ggctatgaca tcaatcagtg ttatgttgtc agctatggag atgattgtgt tttgtctgta 7021 ccagagaagc gggatattag taaactatcc cattatttta aacttttctt tggtatgaca 7081 gccacagcca gcgacaaggc tagtgacata gcatggaggg gcccaatgga aattgagttc 7141 ttgaagagaa cacctgcatt tctgcctgac actcgtaagg tagttggagt tctggacaag 7201 gaagttcttg aaggcaagat tcagtggtgt aaaggcccag aggcatttaa acaacaattg 7261 gattcattct ttctagaagc tgccttgcat ggtcctgaat attacaacta catttgttcc 7321 aaattgaaag ctcgctgtcc tgtcttggaa attcaaccat ggggtgttgc caggatgcga 7381 gcatatactg cctgcatgat tatataacct gcaggcatag cagttccagg gatctgctgt 7441 agtcaattaa aacctggact ctttgtggtt atggggtttt ccatttttgt ttcaaaaacc 7501 tccctccagg gcgtagtgtt gtgggatacc ctagagtaca cgtaaaacac ccaccggttt 7561 ggcaggacac cgcagaggaa ctgcccagtg ttggtcctac tgtctgaaca ggactatctt 7621 agagtagtta tgctaatcaa tccccgtcta ggttgattta gttagtattt agtataagac 7681 caatggtgat ataaagacca cacctaatct ccattttcgg tgtgtgaccc taagccattg 7741 gacttcttta ctttactatt cctccccacc ctaaa //