LOCUS KT591184 6364 bp ss-RNA linear VRL 26-APR-2016 DEFINITION Bamboo mosaic virus isolate BaMV-JXYBZ1, complete genome. ACCESSION KT591184 VERSION KT591184.1 KEYWORDS . SOURCE Bamboo mosaic virus ORGANISM Bamboo mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Alphaflexiviridae; Potexvirus. REFERENCE 1 (bases 1 to 6364) AUTHORS Lin,W., Gao,F., Yang,W., Yu,C., Zhang,J., Chen,L., Wu,Z., Hsu,Y.H. and Xie,L. TITLE Molecular characterization and detection of a recombinant isolate of bamboo mosaic virus from China JOURNAL Arch. Virol. 161 (4), 1091-1094 (2016) PUBMED 26923929 REFERENCE 2 (bases 1 to 6364) AUTHORS Lin,W.W., Gao,F.L. and Yang,W.T. TITLE Direct Submission JOURNAL Submitted (24-AUG-2015) Plant Protection, Plant Virology, Kingshan, Fuzhou, Fujian 350002, P.R. China FEATURES Location/Qualifiers source 1..6364 /mol_type="genomic RNA" /country="China" /collection_date="25-Jun-2014" /host="Phyllostachys aureosulcata" /db_xref="taxon:35286" /isolate="BaMV-JXYBZ1" /organism="Bamboo mosaic virus" CDS 94..4191 /codon_start=1 /protein_id="ALQ32664.1" /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALL PNAANTLERYAIPHNPFSTKLHTHAAAKALENDLYKTASYLLPKERVSFLFMKPSKMQ YFRRRGDTDTFINADMVAKDLARYPLDTIYPHLPEITTKMAFIGDSLHYFQPEVLEHI FTSSPQLETLLATIVLPPEATLKLKSLYPEIYTLHYMPQKFLYKPGGLSGGEYEHDYK DLAWLKIGHVTTPSMCLTVDRVESKAANHLLLIRRGRLKLNHYRSYDTPEPLVVVPKI FLPPKYNAQKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLL LTNYFYVLGKLDSITSFETLLGDNILKRLFRPAIAKIQEIKHWVTGPTAFMQLYKALQ LVDVDFTFEVTRNWETEQKKQPDSELPKDAIDALVESLIGINYADAPVADIESSLQQE RKPQPHPTLPQPLQQTKCPEDAEEPTAPNCEVNEAKETPKEHTPHSQPTPEVNQEASS SRPATIQEQEPSTSHDLPWKAWLKLLKGLGFQGDLEQLDTEGDLIYPIKHIRQLPVEE FSGPITTTLRKMNRLPCKYSPDIERAAAFARDVMSNKTGAILPKQSHEWKTTLKRKCK LNPRQTLISVIHGAGGSGKSRALQEYMRNNRDDPIVTILPTNELRADWKAKLPAHDPD MFMTFENALLIPKGNVVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQSEHFESV EGNTINDLSPSPVVFSAYSRYYINATHRNNQDLANALGVYSEKKGKTRVSVSNHIEDG RHTLVPSQIKQRNYVSMGRKTSTYAGCQGITAPRVQIIVDNDTAKCSHQVLYTAFSRA ADEIHFCNTMTDEKQFWAKVKCTPYLQAILNLTKEVSLPDPKPEPDEPLEPKAPLTHI AVENVLPLVEEITEPLPEKHDREIYSESTGHSNCIQTENEFIQAFQHQQAKDETLFWA TIEKRIVTSTPEANWTEFKTKRPLGDILWLAYKEAMCLPAEPIKFDPELWWKCADEVQ NKYLQKPLHMIKNGILRQSPDFGERHIALFLKSQWVKKNEKIGTINVKAGQTIAAFYQ STVMIFGTMARYMRRVREKFCPKNVLINCEIDQPTASKWVDTHWKFDRLAYTNDFEAY DQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDAN TECNIAYTHARFHIPKGTAQLYAGDDCALNCEPIERESFKPLAGQFTLKSKPVTIKQG KGSWPEFCGNIITPYGYLKHPRKTWAALHKAKLQGKDELKKTATAYALDVLPTYELGD AIHDIFTDNELTFHYQTIRTLHTDAHTQVFANHDAIFGEEGLFSS" /product="ORF1" /note="replicase" CDS 4218..4979 /codon_start=1 /protein_id="ALQ32668.1" /translation="MDNRITDLLTRSGYTRTSEPRGAGQQLVVHAVAGAGKTTLLREI LNTIPGVTIHTAGTPDPPNLTLNYIRGQEPPCAKKYTILDEYPARAKWPEEAWDMLIA DNLQHTGPTTRPHYIKHTTYRLGPQTVKALQNLGYQLEFQHRLDQQDQGFSFTGLFDG PIYGQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLSTVRDKVGLYIA FTRHRKACHIRAPGADPTREDLPAHGSTASSSQTT" /product="ORF2" /note="tgbp2" CDS 4945..5304 /codon_start=1 /protein_id="ALQ32665.1" /translation="MDQPLHLARPPDNTKTYLVLAIGVASALFLYTLTRNTLPHTGDN IHHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFTMVIALATTLFLITKNLINPTPITP RVYAPLCLHCHRNHPPC" /product="ORF3" /note="tgbp2" CDS 5298..5456 /codon_start=1 /protein_id="ALQ32666.1" /translation="MLNTDTLCIILVILILGIIYNILHHPAPPACEITINGHTISIRG NCYHTTSN" /product="ORF4" /note="tgbp3" CDS 5496..6224 /codon_start=1 /protein_id="ALQ32667.1" /translation="MSGTGTGTGRGTGTGAGGAGGTGGTGGGGTGQGRQVANQPWEAK FTKDDLAAIEPRPASANVPNNKQWTNIQAGLLKAGATDANFMKVLLGLSLEAFDRGSS EATTWDGTTEGIEHRAAANAIKEANCPIHKVTYYLAKPTFAIRQAKNLPPANYAKKNV PSQYKWCAFDAFDGLYDPTCLPSELPYDVPSETDRMAYATFKTIQIKTANDQKGFNLN YNPNVTQARLPNTPLPALPEPASD" /product="ORF5" /note="coat protein" ORIGIN 1 gaaaagcagt ccaaacaaaa cgaaaaggaa acaaaagaca tagaaaacga actgtcaatt 61 gtcccctaca atcgccctag gcgtgcggca acaatggcac tagtttctaa agtcttcgac 121 agcatcaccg acccatcact gagggctgta ctccaagaag aagcgcactc gcaagtaaaa 181 caagtgctca aagacacggc gctttactca agatacgccc tcctccctaa cgctgcaaac 241 acgcttgaac ggtacgccat cccccacaac ccgttcagca ctaaactaca cacgcacgca 301 gcagcgaaag ctctagaaaa tgacctctac aaaacggctt catacctcct tcccaaggaa 361 agagtctcct tcctattcat gaagccttca aaaatgcaat acttccgccg acgcggagat 421 actgatacat ttataaacgc cgacatggtg gccaaagatc tcgccaggta tccgctggac 481 accatttacc cccacctccc tgaaatcaca acaaaaatgg cgttcatagg ggacagtcta 541 cactacttcc agccagaggt cctggaacac atcttcacca gctccccgca acttgaaact 601 ctactcgcca caatcgttct ccctcctgaa gccacactca agctcaaaag tctataccca 661 gagatctaca cacttcatta catgcctcaa aaattcctct acaaacccgg aggcctctca 721 ggaggggagt acgagcatga ttataaagac ttggcgtggc taaaaatcgg acacgtaaca 781 accccctcaa tgtgcttaac agtggacaga gtggagtcca aagcggccaa tcacctacta 841 ctcatacgcc gcgggagact taagctcaac cactaccgat catatgacac tcctgaacct 901 ttggtcgttg tgccaaaaat tttcctgcct ccaaaataca atgcacaaaa acccatcaca 961 aaaacgaaag cgaactcatg gatcctatat gtgaagtcgg ctggtgagcc aaaaatcaga 1021 gacgtatggg ccaaactcag acaaacaata gcaaactctg aactaaatca atatgaaccg 1081 gcagaactac tactcctcac caactacttc tacgtgctcg gaaaactgga ctccatcacc 1141 tcatttgaaa ctttgcttgg cgacaacata ctcaaacgcc tctttcgacc ggccatcgca 1201 aagattcaag aaatcaagca ctgggttact ggcccgactg cattcatgca actctacaaa 1261 gcccttcaac ttgttgacgt ggacttcacc tttgaagtca caaggaactg ggaaactgaa 1321 caaaagaaac aacctgactc tgaactgcca aaagatgcca ttgacgcact cgttgaatcc 1381 ctcattggca ttaattacgc agacgcacct gttgctgaca ttgaaagctc ccttcaacaa 1441 gagaggaaac cccaacctca ccccacactg ccacaacctc tccaacaaac caagtgccct 1501 gaggatgcag aagaacccac cgcacccaac tgcgaggtga atgaagctaa agagacacca 1561 aaggaacata ccccacactc acaacccact cctgaggtta atcaagaggc ttcatcatcc 1621 agacctgcaa caatccaaga gcaggagccc tccacatcac atgacctgcc atggaaggcg 1681 tggctcaagc tactgaaagg gcttggattt caaggtgacc tcgagcaatt ggatacagaa 1741 ggtgacctca tttacccaat caaacacatc cgacaactgc ccgtggaaga attcagtggc 1801 ccaatcacaa caaccctgag aaaaatgaat aggctgccat gtaaatactc cccagacatc 1861 gaaagggctg ctgcgtttgc acgagacgtg atgagcaaca aaaccggggc tatcctccca 1921 aaacagtctc acgaatggaa gacaacgctg aaaagaaaat gcaaactcaa tccccggcag 1981 acccttatat ctgttataca tggcgcaggt ggtagcggga aatccagagc tctgcaagag 2041 tatatgcgca acaacaggga cgaccccatc gttactatcc tcccgaccaa tgaactcagg 2101 gctgactgga aagctaagtt gcccgcacac gaccctgaca tgttcatgac atttgaaaac 2161 gcgctactga tcccaaaagg caatgtggtc atcatggatg attacactaa actgccgcgc 2221 ggctacattg aagcatacgt ccaaaactcc ccaatgctgg acctgctcat attaacaggg 2281 gacccaagac agtctgaaca tttcgagtca gtggagggta acacaatcaa cgacctcagc 2341 ccctccccag tagtatttag cgcgtactcc cgctactata tcaatgccac ccaccgaaac 2401 aaccaggacc tagcgaacgc tctgggggtg tactcagaaa agaaaggaaa aactcgggta 2461 tcagtcagca accacattga agacgggcgc cacacgctcg tcccaagcca aattaaacag 2521 agaaactacg tttccatggg caggaagact tcaacttacg caggctgtca aggaataaca 2581 gcaccacgtg tgcaaatcat cgtcgacaat gacactgcca agtgctcaca ccaggtgcta 2641 tacacggcct tctccagggc agcggacgag atacattttt gcaacactat gactgacgaa 2701 aaacagttct gggccaaagt caaatgcaca ccatacttgc aagcgatcct taacctgact 2761 aaagaagtct ccctgccaga ccccaagcct gaaccagacg agcccctaga gcccaaagct 2821 cccctcacac acatcgctgt tgaaaacgtg ctcccgctcg ttgaagaaat cactgaacca 2881 ctcccggaaa aacacgaccg agaaatatac tcagaaagca ctgggcattc aaactgcatc 2941 caaactgaaa acgagttcat ccaagcattc caacaccaac aagctaaaga cgagaccctc 3001 ttttgggcca cgattgaaaa gcgtattgtc acctcgactc ctgaagcaaa ctggactgaa 3061 ttcaagacca agagaccctt aggtgatatc ctatggctag cttacaaaga agcaatgtgc 3121 ttaccggctg agcccatcaa attcgaccca gagctctggt ggaaatgtgc tgatgaagtt 3181 caaaacaaat acctacaaaa acccctccac atgatcaaga acgggatact cagacagagc 3241 ccagatttcg gggagcgtca catcgccctc ttccttaagt cacaatgggt gaagaaaaat 3301 gagaaaattg gcacaattaa cgtcaaagct ggccagacca tcgcagcttt ttaccagagc 3361 actgttatga tctttggtac aatggcccgc tacatgagaa gggttaggga aaagttttgc 3421 ccaaagaatg tgctgatcaa ctgtgagatt gaccaaccca cagcatcaaa atgggtggac 3481 acacattgga aattcgacag gctggcatac accaatgact tcgaggcata tgatcaatcc 3541 caggacggag ctatgctaca atttgaggtc atgaaagcaa gacaccatga tctgcctgct 3601 gacctaattg aatcatacat agaacttaaa ctaaacgcaa aaatattcct gggcaccctc 3661 ggcatcatga gattaacagg tgaagggcca acatttgacg caaacactga gtgcaatatt 3721 gcctacacac atgctcggtt ccacattcca aaaggcacag cgcaactata cgctggagat 3781 gattgcgccc tcaattgcga acccatagaa agagaatcat tcaaaccttt ggccggacaa 3841 ttcaccctta aatcaaaacc agtaacgatc aagcagggca agggttcctg gcccgagttt 3901 tgtggcaaca ttataacacc atacggctac ctcaaacatc ccagaaagac gtgggctgca 3961 ttacacaaag ccaaacttca ggggaaagat gaattgaaga agaccgccac agcctatgca 4021 ctggatgtac tgccaacata cgagctagga gacgccatac atgacatatt cacagacaac 4081 gagctaacgt tccattacca gaccatcaga actttgcaca cggacgcaca cacgcaagtc 4141 ttcgccaacc acgacgcaat cttcggcgaa gaaggtttat tctctagtta agtaacctat 4201 tagtttaata actaactatg gataaccgaa taactgactt actcacaaga tctggctaca 4261 caagaacatc tgagcccagg ggcgctggac aacaactggt agtacatgct gtagcagggg 4321 ctggcaagac cacgttgctc cgagaaatac taaacaccat ccctggagtc acgatacaca 4381 ctgcaggaac acccgaccca ccgaacctca ctctgaacta tattagaggt caagagcctc 4441 cttgtgcaaa gaagtacacc atcctagatg agtacccagc cagggcaaaa tggccagaag 4501 aagcttggga catgctaatc gctgataacc tccaacacac aggtcccaca actcgtcccc 4561 actacatcaa gcacaccacc tacaggcttg gtccccagac tgttaaagca ttacaaaacc 4621 tcgggtatca gctagaattc caacaccggc tggaccaaca ggaccaaggc ttctcattca 4681 ctggcctatt cgatgggcca atttatgggc aaccaatcac actcgacaca gcagcacaca 4741 acttagcctt ggcacacgga ctacctgcac tgcaggccac ccaaacaaga ggactggagt 4801 acgacaccac gaccatcatc tcgagcactc ccttatcaac agtaagagat aaggtgggct 4861 tatacattgc ctttactaga caccgaaaag cttgccacat tcgagcaccc ggcgccgacc 4921 ctacgcgtga ggacctccct gcgcatggat caaccgcttc atctagccag accacctgac 4981 aacactaaaa catacctagt attagctata ggagtagcta gtgcattatt tctctacacg 5041 ctaacccgca acaccctccc acacaccggc gacaacatcc accatttgcc acacggaggt 5101 aggtacgtgg atggcaccaa agggatccta tacaatagcc ccacctcatc atacccatcc 5161 tcatctcttc ctttcaccat ggtcatagcc ctagccacaa ccctcttcct catcaccaag 5221 aacctgatca acccaacccc catcacacct agggtatacg cacccctttg tttgcattgt 5281 caccgaaacc acccgccatg ctgaacactg acacactttg cattatccta gttatattaa 5341 tcctaggtat aatttataat attttgcatc atcctgcacc cccagcgtgt gaaataacta 5401 taaacgggca taccatctcc atcagaggca actgctatca caccacctct aattagagtt 5461 tgttaagttt ccaattttgt gaattaaaca taaagatgtc tggaactgga acaggaactg 5521 ggaggggaac gggaacagga gcaggaggcg caggaggcac aggcggtact ggcggtgggg 5581 gcacaggtca aggacgacag gttgctaacc agccctggga agcaaagttt acaaaagatg 5641 atttggcagc catcgagccc agacccgcct cagcaaacgt gcccaacaac aagcagtgga 5701 ccaacatcca agctgggctc ctcaaggcgg gcgcaacaga cgccaacttc atgaaagtgt 5761 tgctgggcct cagcctggaa gctttcgatc gaggctcgtc tgaggctacc acttgggatg 5821 gaaccactga gggcatcgaa caccgagccg cagcaaatgc catcaaggag gccaactgcc 5881 caatacacaa ggttacctac tacctggcca aaccgacatt cgccatcagg caagctaaga 5941 acctcccccc agccaactac gcaaagaaga atgtgccatc acaatacaaa tggtgcgcgt 6001 ttgacgcctt cgacggtctg tatgacccaa cctgcctgcc atcagaacta ccttacgacg 6061 taccctctga aacagaccga atggcatacg ccactttcaa aacaatccag atcaagaccg 6121 ccaacgacca gaaaggtttc aacctcaact acaaccccaa cgttactcaa gcacggctcc 6181 caaacacgcc actgccagca cttcctgaac cagcgtcaga ttaaacgttg catgatcgta 6241 aaacatgccc ggcttaccgt gagccgcctt tgaaagaaag gtttacacgg accctgttgt 6301 gtaatgcacg tacctaactt gtgccagcag aataaagacc ttttggtttc tacagttttt 6361 tcca //