LOCUS KX648526 6366 bp RNA linear VRL 14-FEB-2017 DEFINITION Bamboo mosaic virus isolate CHGZHA4, complete genome. ACCESSION KX648526 VERSION KX648526.1 KEYWORDS . SOURCE Bamboo mosaic virus ORGANISM Bamboo mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Alphaflexiviridae; Potexvirus. REFERENCE 1 (bases 1 to 6366) AUTHORS Lin,W., Wang,L., Yan,W., Chen,L., Chen,H., Yang,W., Guo,M., Wu,Z., Yang,L. and Xie,L. TITLE Identification and characterization of Bamboo mosaic virus isolates from a naturally occurring coinfection in Bambusa xiashanensis JOURNAL Arch. Virol. (2017) In press PUBMED 28050737 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 6366) AUTHORS Lin,W., Wang,L. and Yan,W. TITLE Direct Submission JOURNAL Submitted (01-AUG-2016) Plant Protection, Plant Virology, Kingshan, Fuzhou, Fujian 350002, P.R. China FEATURES Location/Qualifiers source 1..6366 /mol_type="genomic RNA" /country="China" /collection_date="10-Jun-2015" /host="Bambusa pervariabilis" /db_xref="taxon:35286" /isolate="CHGZHA4" /organism="Bamboo mosaic virus" CDS 94..4191 /codon_start=1 /protein_id="AQM55961.1" /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALL PTAANTLERYAIPHNPFSTKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQ YFRRRADADTFINADMVAKDLARYPLDTIYPHLPEITTKMAFIGDSLHYFQPEVLEHI FASSPQLQTLLATIVLPPEATLRLKSLYPEIYTLHYMPHKFLYKPGGLSGGEYEHDYK DLDWLKIGHVTTPSMCLTIDRVESKAANHLLLIRRGRLKLNTYRSYDTPEPLVVVPKI FLPPKYNAQKPITKTKANSWILYVKSAGEPKIRDVGAKLRQTIANSELNQYEPAELLL LTNYFYVLGKLDSITSFETLLGDNILKRLFRPAIAKIQELKHWVSGPTAFMQLYKALQ LVDVDFTFEVTKGWQQAAPKLDEPELPKDAIDTLVESLIGINYTDAPTTEAATNGQRE TKPEPQPPLPQPLQQTKCPEDTEATTLPSRCETETGRNADHLTSQAQPNSLPDQGTAS TSSNSTGERSPVTPNELPWKAWFKLLRGLGFQGDLEQRDTEGDLIYPIKHIRQLPVEE FSGPITPTLRQMNRLPCRYSPDIERAAAFARDVMSNKTGAILPKQSHEWKTTLKRKCK LAPKQTLISVIHGAGGSGKSRALQEYMRANKDDPIVTILPTNELRADWKSKLPAHDPD MFMTFENALLVPKGNVVIMDDYTKLPRGYIEAYVQNAPMLDLLILTGDPRQSEHFESV EGNTINDLSPSPAVFSAYARYYINATHRNNQDLANALGVYSEKTGKTRVSVSNHVEDG RHTLVPSQIKQRNYVSMGRKTSTYAGCQGITASRVQIIVDNDTAKCSHQVLYTAFSRA ADEIHFCNTMTDEKQFWAKVKCTPYLQSILNLTKERSLPDPKPESDDPPEPKAPVTHI AVENVVPLVEEIIEPLPEKHDREIYQESTGHSNCIQTENEFIQAFQHQQAKDETLFWA TIDKRIVTSTPEANWTEFKTKRPLGDILWLAYKEAMCLPSEPIKFDPDLWWKCADEVQ NKYLQKPLHMIKNGILRQSPDFGERHIALFLKSQWVKKNEKIGAVNVKAGQTIAAFYQ STVMIFGTMARYMRRVREKFCPKNILINCEIDQPMASKWVDTHWRFDRLAYTNDFEAY DQSQDGAMLQFEVMKARHHDLPTDLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDAN TECNIAYTHARFHIPKGTAQLYAGDDCALNCEPVERESFKPLAGQFTLKSKPVTIKQG KGSWPEFCGNIITPYGYLKHPRKTWAALHKAKLQGKDELKKTATAYALDVLPTYELGD AIHDIFTDNELTFHYQTIRTLHTEAHTRVFTNHDAIFGEEGLFSS" /product="ORF1" /note="replicase" CDS 4218..4979 /codon_start=1 /protein_id="AQM55962.1" /translation="MDNRITDLLTKSGYTRTSEPRGAGQQLVVHAVAGAGKTTLLREI LNTIPGVTIHTAGTPDPPNLTLNYIRGQEPPCPSKYTILDEYPARSKWPEEAWDMLIA DNLQHTGPTTRPHYIKHTTYRLGPQTVKTLQSLGYNLEFQHRVDQQDQGFSFTGLFDG PIYGQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLPTIKDKVGLYIA FTRHRKACHIRAPGADPTREGPPAHGPTASPSQTT" /product="ORF2" /note="TGBp1" CDS 4945..5304 /codon_start=1 /protein_id="AQM55963.1" /translation="MDQPLHLARPPDNTKSYLVLAIGIASALFLYTLTRNTLPHTGDN IHHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFTMVIALATTLFLITKNLFNPTPTTP RVYAPLCLHCHRNHPPC" /product="ORF3" /note="TGBp2" CDS 5298..5456 /codon_start=1 /protein_id="AQM55964.1" /translation="MLNTDTLCIILLILTLGIIYNLSQRPQHSPCEITINGHTISIKG SCYHTTSS" /product="ORF4" /note="TGBp3" CDS 5498..6226 /codon_start=1 /protein_id="AQM55965.1" /translation="MSGTGTGTGRGTGTGAGGTGGTGGTGGTGAGRGQQPAGQPWEAR FTKDDLAAIEPKPASANVPNTKQWTNIQAGLIKAGATDANFMKVLLGLSLEAFDRGSS EATTWDGATEGVEHRAAANAIKEANCPIHKVTYYLAKPTFAIRQSKNLPPANYAKKNV PSQYKWCAFDAFDGLYDPTCLASELPYDAPSEIDRMAYATFKTIQIKTANDQKGFNLN YNPNVTQARLPNAPLPALPQPVSD" /product="ORF5" /note="coat protein" ORIGIN 1 gaaaagcatt ccaaactaaa cgaaaagaaa ccaaaagaca ttaaaaacga actgtcaatt 61 gtcccctaca atcgccccag gcgtgcggca gcaatggcac tcgtttctaa agtcttcgac 121 agcatcaccg acccatccct gagagctgta cttcaagaag aagcgcactc acaagtcaag 181 caggtactca aagacacagc gctgtattct cggtacgctc tcctccccac cgctgcaaac 241 acgcttgaac ggtacgctat cccccacaac ccgttcagca ccaaattaca cacccacgca 301 gcggccaaag ccctcgaaaa cgacctttat agaacggctt catacctcct tcccaaagaa 361 agagtgtcct tccttttcat gaagccgtca aaaatgcaat actttcgcag acgagcagac 421 gccgacacat tcataaatgc agacatggtg gccaaggacc tagccagata ccctctagac 481 accatttacc cacacctccc tgaaatcaca acgaaaatgg cgttcatcgg agacagccta 541 cactacttcc aacctgaggt cctggaacac atcttcgcta gctccccaca acttcaaact 601 ctgctcgcca caatcgtcct cccccccgag gccacactta gactcaaaag cctgtacccg 661 gaaatctaca cactccacta catgcctcac aagtttctct acaaaccggg tgggctatcc 721 gggggggagt atgagcacga ttataaggac ttagattggc tgaaaatcgg gcatgtcacc 781 accccttcaa tgtgcttgac gattgacagg gtggagtcta aagcagccaa ccatctacta 841 ctcatacgcc gcggcagact caagctcaac acgtatagat cgtatgacac tcccgagccc 901 ttagtagttg taccaaaaat tttcctgccc ccaaagtaca acgctcaaaa acccatcacc 961 aaaactaagg ccaactcatg gatcctatac gtaaagtcag ccggcgagcc aaaaatccga 1021 gacgtggggg cgaaactcag gcagaccata gccaactcag aactgaacca atacgagcca 1081 gccgagctgc tactccttac gaactacttc tacgtgctag ggaagttaga ctctatcaca 1141 tccttcgaga ccctactcgg cgacaacata ctcaaacgcc tgttcagacc agccatcgca 1201 aagattcaag agctaaaaca ctgggtcagc ggcccaaccg cgttcatgca actctacaag 1261 gcccttcaac ttgtggacgt cgacttcacc tttgaggtca ctaagggttg gcaacaagcg 1321 gcaccaaaac tcgacgagcc agaactgcca aaagacgcaa tagacaccct tgtcgagtcc 1381 cttattggca ttaactacac agacgcgccc actacagaag ccgcgaccaa tggccagcga 1441 gaaacaaaac cggaacccca acccccgctc ccacagcccc tacaacaaac caaatgcccc 1501 gaagacactg aggccaccac cctgcccagt cgttgtgaaa ccgagaccgg aaggaacgct 1561 gaccacttga cgtcccaagc ccaacccaac tccctaccag accaggggac cgcttccaca 1621 agctcaaact caactggcga acgctcgccc gtcacaccca acgagctacc atggaaggca 1681 tggtttaagc tgctgcgagg cttaggtttt caaggcgacc ttgagcagcg agacacggaa 1741 ggtgacctca tctacccaat caagcacatc cgccaactac cagtggagga gttcagtggc 1801 ccaatcaccc caacactaag gcaaatgaac agactgccat gcaggtactc tccagacatt 1861 gaaagggccg ccgcattcgc gagagatgta atgagcaaca aaacaggggc catccttccc 1921 aaacaatccc acgagtggaa gaccacacta aaaagaaaat gcaagcttgc gcccaaacaa 1981 actctcatct cagtcatcca tggcgcaggc ggtagtggga aatcacgggc actgcaggag 2041 tacatgcggg ctaacaaaga tgaccccatc gtcactatcc tcccaacaaa tgagctaaga 2101 gctgattgga aatctaagtt gccagcacac gaccccgaca tgttcatgac atttgaaaat 2161 gcactgctcg tcccaaaggg caatgtcgtc atcatggatg attacactaa actgccgcgc 2221 ggatacatcg aagcgtacgt acaaaacgct ccaatgctgg acctcttgat actcacgggt 2281 gaccccaggc aatcagagca ctttgaatca gttgaaggca acactatcaa tgacttaagc 2341 ccctcaccag ctgtctttag cgcatacgcc cgctactaca tcaacgccac ccacagaaat 2401 aatcaagacc tggcaaatgc cttgggggtg tactctgaga agacaggaaa aacccgggtg 2461 tctgtcagca accacgtcga agatgggcgt cacacgttag tcccaagcca aatcaaacaa 2521 agaaactacg tgtctatggg aagaaagacc tcaacttacg caggctgcca gggaatcaca 2581 gcctcacgcg tgcagattat tgttgataac gacactgcaa aatgctccca ccaggtcctg 2641 tacaccgctt tctcaagggc ggcggatgaa atacacttct gcaacacaat gactgacgaa 2701 aagcagttct gggccaaagt caaatgcacg ccatacctgc agtcgatcct caacctgaca 2761 aaagaacgct cgctgccaga ccccaaacct gaatcagacg accccccaga acccaaagcc 2821 ccggtcacac acatagccgt ggaaaatgtt gtgccgttgg ttgaagagat catcgagccc 2881 cttccagaga agcacgacag ggaaatatat caagaaagca ctggacactc caactgcatc 2941 caaactgaaa acgaattcat ccaagcgttc cagcatcaac aggcaaagga cgagacgctc 3001 ttctgggcca ccatcgacaa gcgcatagtc acctcaacac ccgaggccaa ttggacagaa 3061 ttcaaaacaa aaagaccgct cggggatatc ttgtggttag catacaaaga agcaatgtgc 3121 ctgccctccg aaccaatcaa attcgacccg gacctttggt ggaagtgtgc agacgaagtc 3181 caaaacaagt acctgcaaaa acctctccac atgatcaaaa atggtatact cagacagagc 3241 ccggacttcg gtgaacgcca tattgcccta ttcctcaagt cacagtgggt gaagaaaaac 3301 gagaaaattg gggctgttaa cgtcaaggcc ggccaaacca tcgccgcctt ctaccaaagc 3361 accgtcatga tattcggcac gatggcccgc tacatgagaa gagtccggga gaagttctgc 3421 cccaagaaca tcctgatcaa ctgcgaaatc gaccagccaa tggcatcaaa gtgggtagac 3481 acacactggc gattcgatag actggcctac acgaatgact tcgaggctta tgaccagtcg 3541 caggacgggg caatgcttca atttgaggtc atgaaagcga gacaccatga cttgcccaca 3601 gacctgattg agtcctacat tgagctgaaa ctaaacgcaa agatattcct aggcaccctc 3661 ggaatcatga ggttaacagg cgaaggccca acatttgacg ccaatactga atgcaacatc 3721 gcctacacac acgccaggtt ccatataccc aaaggtacag ctcagctcta cgccggagat 3781 gactgcgcac tcaattgtga gcctgtcgaa agagaatcat tcaagccact agccgggcaa 3841 ttcaccttaa aatcaaagcc cgtgacaatc aagcaaggta aaggctcttg gcccgaattc 3901 tgtggcaaca ttatcacacc ttacggctat ctaaaacacc cccgcaaaac atgggctgcg 3961 ctgcacaaag ccaaactcca agggaaggat gaactaaaga agaccgccac agcttatgca 4021 ctagacgtgc taccaacata cgagctcggg gacgcaatcc atgacatctt tacagacaac 4081 gagctgacct tccactacca aactattagg actctacaca cggaagccca cacccgagtc 4141 ttcaccaacc acgatgcaat attcggtgaa gagggtttat tctctagtta agtaacctat 4201 tagtttaata actaatcatg gataaccgta taactgacct actcacgaaa tctggctaca 4261 cgagaacatc agaaccaaga ggcgccgggc aacagctggt tgtacacgcc gtggcaggag 4321 ccggaaagac cacactactc cgtgaaatac tcaacactat cccaggagtt accattcata 4381 ctgcaggaac cccggacccc ccgaacctta ctttaaacta catcagagga caagagcccc 4441 cttgcccaag caaatacaca atcctagacg agtacccggc cagatcaaag tggcccgagg 4501 aggcatggga catgctgatc gctgacaact tgcaacacac aggccccacg acccgccccc 4561 actacataaa gcataccacc taccggctcg ggccccaaac agtgaaaacg ctgcaaagtc 4621 tcggttacaa cttggaattc cagcaccggg ttgatcagca agaccaaggc ttctcgttca 4681 ctggtctatt cgacggtcct atctacgggc agcccatcac cctcgacaca gcggcccaca 4741 acctggctct agcgcacggg ctacctgctc tgcaagcaac tcagacaagg ggactagaat 4801 acgacaccac cactatcata tccagcactc cactgccaac catcaaggac aaggtgggct 4861 tatacatcgc cttcacaaga cacagaaaag cctgccacat aagggcgcca ggagctgacc 4921 ctacacgtga gggaccccca gctcatggac caaccgcttc acctagccag accacctgat 4981 aacaccaaat cgtacttagt attagctata ggcatagcta gcgcactgtt cttatacacg 5041 ctaacccgca acaccctccc ccacaccggc gataacatcc accatttgcc tcacggaggt 5101 agatatgtgg atggtaccaa aggtatcctg tacaatagcc ccacctcctc ctacccatct 5161 tcatcactcc ctttcaccat ggtcatagcc ttggccacta ccctctttct tatcaccaaa 5221 aacctcttca acccaacacc cactacgcct agagtctacg cacctctctg cttgcactgc 5281 caccgaaacc atccaccatg ctgaacactg acacgctatg tatcatcctg ttaatactaa 5341 cattaggcat aatctacaac ctatcacaac gaccacaaca ctcgccatgt gagataacca 5401 taaacgggca cactatatct attaagggaa gttgctacca tacaacttcc agctagagtt 5461 tgttaagttt cccacttttg taaattaaac aaagaaaatg tcaggaactg gaacaggaac 5521 tggacgagga acaggcacgg gagccggggg taccgggggc acaggaggta caggtggaac 5581 gggcgcgggc cgaggacaac aaccagctgg ccagccctgg gaagcaaggt tcaccaagga 5641 cgacctggcc gccattgaac caaaacccgc ctcggccaac gtgccaaaca ccaaacaatg 5701 gaccaacatc caagctgggc tgatcaaagc aggggcgaca gatgccaatt ttatgaaagt 5761 gctgctcggc ctcagcttgg aggctttcga ccgaggctcg tcagaggcca ccacctggga 5821 cggggccact gagggtgtgg aacatcgtgc ggctgccaat gctatcaaag aggccaactg 5881 cccaatacac aaagtcacct actacctggc caagcccacc ttcgccatca ggcagtcaaa 5941 gaaccttccc ccggccaact acgcaaagaa aaatgtgcca tcacagtaca aatggtgcgc 6001 cttcgacgct tttgacggct tatacgaccc cacctgcctc gcctctgaac taccttacga 6061 cgcgccctct gaaatagacc gcatggccta cgccaccttc aaaaccattc agatcaagac 6121 cgccaatgac cagaagggat tcaatctcaa ctacaacccc aatgtcaccc aagcgcgact 6181 cccgaacgca ccactgccag cgctccctca accagtctca gactaaacgt tgcatgatcg 6241 taaaacatgc ccggcttacc gtgagccgcc tttgaaagaa aggtttacac ggactctgtt 6301 gtgtcagaca cgtacttaac ttgtgtcagc agaataaaga ccttttggtt tctacagttt 6361 tttcca //