LOCUS NC_023850 2806 bp DNA circular VRL 01-APR-2014 DEFINITION Baminivirus isolate BamiV, complete genome. ACCESSION NC_023850 VERSION NC_023850.1 DBSOURCE BioProject accession PRJNA242951 KEYWORDS RefSeq. SOURCE Baminivirus ORGANISM Baminivirus Viruses; ssDNA viruses; Geminiviridae; unclassified Geminiviridae. REFERENCE 1 (bases 1 to 2806) AUTHORS Ng,T.F., Marine,R., Wang,C., Simmonds,P., Kapusinszky,B., Bodhidatta,L., Oderinde,B.S., Wommack,K.E. and Delwart,E. TITLE High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage JOURNAL J. Virol. 86 (22), 12161-12175 (2012) PUBMED 22933275 REFERENCE 2 (bases 1 to 2806) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-MAR-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2806) AUTHORS Ng,T.F.F., Marine,R., Wang,C., Simmonds,P., Kapusinsky,B., Bodhidatta,L., Oderinde,B.S., Wommack,K.E. and Delwart,E. TITLE Direct Submission JOURNAL Submitted (13-SEP-2012) Department of Virology and Department of Laboratory Medicine, Blood Systems Research Institute and University of California San Francisco, 270 Masonic Ave, San Francisco, CA 94117, USA REMARK Sequence update by submitter REFERENCE 4 (bases 1 to 2806) AUTHORS Ng,T.F.F., Marine,R., Wang,C., Simmonds,P., Kapusinsky,B., Bodhidatta,L., Oderinde,B.S., Wommack,K.E. and Delwart,E. TITLE Direct Submission JOURNAL Submitted (04-APR-2012) Department of Virology and Department of Laboratory Medicine, Blood Systems Research Institute and University of California San Francisco, 270 Masonic Ave, San Francisco, CA 94117, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to JQ898331. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2806 /mol_type="genomic DNA" /country="Thailand" /isolation_source="sewage" /collection_date="18-Jun-2009" /db_xref="taxon:1229324" /isolate="BamiV" /organism="Baminivirus" stem_loop join(2787..2806,1..13) gene 11..289 /locus_tag="DF42_gp1" /db_xref="GeneID:18938802" CDS 11..289 /locus_tag="DF42_gp1" /db_xref="GeneID:18938802" /codon_start=1 /protein_id="YP_009021227.1" /translation="MRDLRDFYVPRLRMNEFIRRPIGDGLKESPDLCVLPGYLGRTNQ VRLSYPGPTFTRSVTRSCPARSRDPHVIFLGWFGGAGGFTPQHFLSIA" /product="putative movement protein" gene 373..1848 /locus_tag="DF42_gp2" /db_xref="GeneID:18938800" CDS 373..1848 /locus_tag="DF42_gp2" /db_xref="GeneID:18938800" /codon_start=1 /protein_id="YP_009021228.1" /translation="MRYDLEAQRHYRNKWHGRAFSRIRHPIGYRALAGLGGAAVAGLG ALYPRAKRVIGRLRGVKVAPNEEWLLGEKEFPQVRAHIKGSTALAKRPLGTLTAYYPV TKHYKTSSSKSMSNGGDTQMADSNATTEAALGWGQHDAKTLYTRRRRTRKNWRKSYRR ARTKGSLSYYQKKYIRNKIRARGGVTLPTSLSIINKHTLYRHDGDGGSMLGVDTLGCF FHSIGSTLETASEKHIDIHDIFKQLYAQADLTDATGTSWQTGAATANMRLHIKSARAN FTFANNSTQTMLVKMWTFSCKKSITDTDMTAGGLMSLADVVGASPSTLGRYFYDTQFH EQDRGADDDHIDMDKTLVHTFNPNLSVIAKQYLTLDKIQRWEMPAGSVVQFEYNSKIG ISVNYHTCLKYFAMKGVSQFFVFQVHSAPYVDGDHAIQPSRGLAADTGVVMTLKKEYR WSPVWNSIDDLSVNQKHKFTPSATVNPAGKPQDATTLEYHL" /product="capsid" /note="Cap" gene complement(1845..2789) /locus_tag="DF42_gp3" /db_xref="GeneID:18938801" CDS complement(1845..2789) /locus_tag="DF42_gp3" /db_xref="GeneID:18938801" /codon_start=1 /protein_id="YP_009021229.1" /translation="MAQPRFRLQGKNILLTYPQCNLEVKHVCDELALRLPPGRCSGVL ERHQDGNPHLHILWELRRRLDTQNPRFFDVDTFHPNVVVVRSVRGARDYIAKTGAEVY TNEPGEPECESWGEILEQATSREGFLDLVRKHKPRDFILNMERLEYAANILFAEPEQS FVSMYTTFAPPSACHDWWLQYGARPRLEGRLQSLYVEGASRIGKTEWARSLGPHVYFN NMYNLDDLKSALRYAEFAVFDDIPFDRLPAWKSFFGCQHTFTLTDRYRKKFTISDWSK PSIFLVNPDMTYDAWNKGREWEYIKQNAVIVKTDSRFY" /product="Rep" ORIGIN 1 acctgcgatt ttgagggatt tgagggactt ttatgttcct cgactgcgga tgaatgaatt 61 tatccgcaga ccaatcggag atggtttaaa agagtcacca gacctttgtg tattgccggg 121 gtacctcggg cgcaccaatc aggttcgcct gtcatacccc ggcccgactt ttacccggag 181 tgtaacgagg agttgccccg caaggtcacg tgaccctcac gtgatctttt taggttggtt 241 tgggggggcg ggggggttta ccccccagca ttttctttct attgcgtaag gcccccttgg 301 gggccgctca ttagggactt ttaggttggt ttgcgcatat aaaagggatg tttaggtcct 361 tttaggtctc gtatgcgtta cgatttagag gcgcaacgcc attatcggaa caaatggcac 421 ggcagggcgt tcagtcgcat aaggcatcca atcgggtatc gtgctttagc tggtttaggt 481 ggcgcagcgg ttgctggttt aggggctctg tatcccagag cgaagcgcgt catcggtcgt 541 cttcggggtg ttaaggttgc accaaatgag gagtggcttc ttggtgaaaa agagtttcct 601 caggttcgcg cgcatataaa agggagtact gcccttgcta agcgtccact tggtactttg 661 actgcgtatt atcctgtcac caagcattac aagacatcaa gttcgaaatc tatgagtaat 721 ggtggcgata cgcagatggc ggacagcaac gcgacgaccg aggcggcgtt gggttggggc 781 cagcacgatg cgaagacgtt atatacgcgc cggcgtagga cgcgcaagaa ttggcgcaag 841 agctatcggc gcgcgcgcac gaagggttcg ctttcgtact atcagaagaa gtacataagg 901 aataagatta gggcacgtgg aggcgttacc ttgccaacgt ccctgtctat tatcaacaag 961 catactcttt ataggcatga tggagatggt ggatctatgc ttggtgttga cactcttggg 1021 tgtttcttcc attcgattgg atctacactt gagactgctt ctgagaagca tattgatatc 1081 catgatatct ttaagcagtt gtatgctcag gcggatctta ctgatgcgac tggtacttcg 1141 tggcagactg gagccgctac tgccaatatg cggcttcata ttaagtctgc tagggccaat 1201 ttcacttttg ccaataattc gacccagact atgttggtta agatgtggac tttttcgtgt 1261 aagaagtcta ttactgatac agatatgact gctggtggtt tgatgtcatt ggctgatgta 1321 gttggcgctt ctcctagtac tttgggtcgg tacttttatg atactcagtt tcatgaacag 1381 gatagaggcg ctgatgatga tcatattgat atggacaaga ctttggttca tactttcaac 1441 cctaacctta gcgttattgc taagcagtat ctcacgctgg ataaaattca gcgttgggag 1501 atgcctgccg gttctgttgt tcagttcgag tataactcca agatcggaat ttcggtgaat 1561 tatcatacat gcctcaagta ctttgctatg aagggtgtgt cccagttctt tgtgttccaa 1621 gttcattcgg caccttatgt ggatggagat catgctattc agccatcaag aggacttgcg 1681 gcggatactg gtgttgttat gacgcttaag aaggagtatc gttggtcgcc tgtctggaat 1741 agtatcgatg atctttcggt caatcagaag cataagttta cgccttcggc aactgttaat 1801 ccggctggta agccacagga tgctactact ttggagtatc atctttaata aaaacggcta 1861 tctgtcttta ctatcacagc attttgctta atgtattccc actctcttcc cttattccat 1921 gcatcgtacg tcatgtcggg gttgactaaa aagattgaag gcttcgacca atcagaaatg 1981 gtgaactttt tgcggtatcg atcggtcaag gtgaaggtgt gttgacaccc aaagaaagac 2041 ttccacgctg gtaaacgatc aaacggaata tcatcaaaca ccgcgaattc ggcgtatcga 2101 agagcggact tcagatcgtc caagttgtac atgttgttga agtacacgtg cggccccaag 2161 gatctggccc attcggtctt gcctatacgt gaagctcctt cgacatacag ggactgtaga 2221 cgaccctcga ggcgaggtct tgctccgtac tgtagccacc agtcatggca ggcgctcggc 2281 ggggcgaagg tggtgtacat ggacacaaaa ctttgttctg gctcagcgaa taggatgttc 2341 gcggcatatt cgagtcgttc catattgagg atgaagtctc gtggcttgtg tttgcgcacg 2401 aggtccagga atccttctct gctcgtagcc tgttcaagaa tttcgcccca gctctcgcac 2461 tcgggctctc cgggctcatt ggtgtatact tctgctccag ttttggcgat gtagtctctc 2521 gctcctcgga ctgaccgcac gaccacgaca ttcggatgga aagtatcgac gtcgaagaat 2581 cttgggttct gagtgtcaag tctcctgcga agctcccata ggatgtggag atggggattg 2641 ccatcttggt gtcgttccag gacaccacta caccggccgg gcggtagacg caatgcgagt 2701 tcgtcgcaga catgtttgac ttcgaggttg cactgaggat aggtcaagag tatgttcttg 2761 ccttggagcc ggaatcgtgg ctgcgccaaa atcgcagatt aatatt //