LOCUS KJ013507 7263 bp DNA circular VRL 13-NOV-2014 DEFINITION Banana streak GF virus, complete genome. ACCESSION KJ013507 VERSION KJ013507.1 KEYWORDS . SOURCE Banana streak GF virus ORGANISM Banana streak GF virus Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus. REFERENCE 1 (bases 1 to 7263) AUTHORS Rajeswaran,R., Seguin,J., Chabannes,M., Duroy,P.O., Laboureau,N., Farinelli,L., Iskra-Caruana,M.L. and Pooggin,M.M. TITLE Evasion of short interfering RNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses JOURNAL J. Virol. 88 (19), 11516-11528 (2014) PUBMED 25056897 REFERENCE 2 (bases 1 to 7263) AUTHORS Rajeswaran,R., Seguin,J., Chabannes,M., Duroy,P.-O., Laboureau,N., Farinelli,L., Iskra-Caruana,M.-L. and Pooggin,M.M. TITLE Direct Submission JOURNAL Submitted (31-DEC-2013) Department of Environmental Sciences, Botany, University of Basel, Hebelstrasse 1, Basel, BaselStadt 4056, Switzerland COMMENT ##Assembly-Data-START## Assembly Method :: Velvet v. 1.2.07; Oases v. 0.2.08; Seqman module of Lasergene DNASTAR v. 8.1.2 Assembly Name :: BSGFV-[MP] Coverage :: 50x Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7263 /mol_type="genomic DNA" /country="France: Montpellier" /collection_date="Nov-2010" /host="Musa acuminata cv. Cavendish, inoculated with BSGFV 15 years ago using mealybugs and then propagated vegetatively in a greenhouse" /db_xref="taxon:328670" /isolate="MP" /organism="Banana streak GF virus" CDS 484..1011 /codon_start=1 /protein_id="AHM92949.1" /translation="MNSDLKEFENQFLSWRNSWQNWKDLDYLNLESSSRADLAHNLRI TAYRVDLGNKALFALSKQNCLHTLDLRTKLQEQELQLQEIGKLSKIVRQQRNDLKLLL SKQDHLQEEILQLRQDYLKRRPLSKEDVEELVIKISEQPKFIEKQTEALTEELAKKVD KVEELIHHLRKTILG" /product="hypothetical protein" /note="small protein of unknown function; ORFI" CDS 1008..1346 /codon_start=1 /protein_id="AHM92950.1" /translation="MNSEAYKEALRATSKGWPDNGIGFTEKESTTNLSTISRQLNTIL YTVLQLRIEVASLQEELRKTKVEQSPDITKLTEQLDKVHLSSKGAAYKEDKGKIKVFK NPFDLLKEIQ" /product="hypothetical protein" /note="small protein of unknown function; ORFII" CDS 1343..6841 /codon_start=1 /protein_id="AHM92951.1" /translation="MTTQRAHLPSINGTEVASTSRQPGTPLVEDQIRDYRRSARARYE AQRMGRNLVNIGRTIVGRRPREHTLALLMDPEVELRRSMQERARTVPAEVLYMTRRDD IHHRVYHYRSEEGMLITGSDQQDRTFITEESYEHLAQAEIEYIHLGILQVRFQILHRR YAGTMALLVFRDTRWNSDDRSIIAAMEVDLSEGNQLIYIMPDMMMTIKDFYRHIQMSI QTRGYDSWTGAEANLLITRSITSRLSNTPNVGFAFQVNKVAEYLRSKGIKAIDAMKYS TGQFQHSRWNLRPSTVVIPVLPSTLVTSTNYDGSTTLQFGGYQAASSSRPPIYNNEDD EIDEEQHIVAVITIIDDQEDDYPALAAVEKQIFPENMVGEEEAIISSFLQKLELSEDE ESYYGDLESEPRSHYEINHLDDDYPELLNVEKILSTNESAISNYRVPQDEEMTVPGYA PAGSSRGWATNIDDAMLHQRKPKRWDNSSEWFQLPSANARQGSIFVMPYDFDVKVFER WESSVLVHLADKNFDTPEDKVIYIENLLGESEKKAFMTWRMKYLPEFEALKAAALGNN GTQNILNQIRMIFFLENPKVGTTDEQDAAYKTIKSLVCNEMTDKAVYRYMNDYFHLAS KSGRMWANEELSTEFFTKLPRHLGDKVEKAFKERHPTNSIGVTARIAFTRNYLKDMCQ EALFQSQLKKMNFCGNTPVHGVYGKSKEGGFRKYGARKNTSYKGKPHKSHIRIGKQKH LNLRKKGCKCFACGETGHYASECTNPKKFTHRVAILESLDLQEGLEVVSVGMDESDVS DIYSISENEDNHQITDEWDVLMLQEEEIPEPSEYYIGEPGWRSQMKVSKTEFHCQHEW KFDKEDSKHCRDCKFEARRDNRMDCSKCQLTICALCTYHCFKILIPRKQTTPSMKHDW RELAERQSELLRKFCQREKELEQEVQELRREISTLKTDLANLSVIQETPEEDEEELQR LRQENTLLELLNQKQQKDIEALQQQNELLLQLAKIDKKEIESLRSQHPLPVLHLDDFA VTAVQPSNNLLNIKVIVEIDGKQLPLNAILDTGAAICVCNGEVIPQEYRRSSLTDSLI QGVNGATRVNEILKDGKLWVGDQYFRIPRTYIMPTMHKGLEFIIGMNFIKAMEGGLRI EKGEVTFYKLVTTVNTSPKPHEVCLLDELDLELPEYYDICAAIPRQGSINEEFISPSE IDRLKRLGFIGEEPLKHWKKNQIKCKLEIKNPDLIIEDRPLKHVTPAMKETMTKHVQR LLDIKVIRPSTSKHRTTAIMVNSGTEIDPITGAEKKGKERLVFNYKRLNDNTEKDQYS LPGINTIIARISHSKIYSKFDLKSGFHQVAMEEESIPWTAFWAINGLYEWLVMPFGLK NAPAIFQRKMDNCFRGTEKFIAVYIDDILIFSDSKEAHRTHLRQFITICEENGLVLSP TKMKIGVQQVDFLGATIGDSKVRLQPHIVKKVLETKEESLSETKALRRWLGILNYARA YIPDLGKILGPLYSKTSGKGERKLNHQDMKIIHQIKEKVKNLPELEVPPPESIILIET DGCMDGWGGICKWKLNKGEPRSAEKICAYASGRFNPIKGAIDAEIQAVIYSLEKFKIY YLDKKELILRTDSKAIVRFYEKCSEHKPSRVRWMTLTDYISGCGVKVYFEHIDGKDNT LADELSRLVQAILINKEESPTILSLIKATTEVLQKENPISRSRLALCISRALGNKYQV NFITWEQPQLKCACGENAVLLTSHTSRNPGRRFYRCGTNTCHVWYWADLIEDYIAQLS NLQNLDSGQADDEGWAYQTEDLINPEDLANSDIDDPPEDSGLFHRHDD" /product="polyprotein" /note="contains viral coat protein and proteins with homology to an aspartic protease, reverse transcriptase and RNase H" ORIGIN 1 tggtatcaga gcaaggttaa gattgatggc attcatgggg taaaacccta agataggggc 61 ctgattgagt tctacgtttc tgttaaggta agatttcctt tcctgataag tcgaataatt 121 tttatgtatc tttctcaagt aatcttgaaa aactggcatg attattgaat gaaaaatgag 181 ctattaccaa aaacaaaaaa atggagttgg gaagacagag gggttgtttg cagaaggccg 241 ttctaagcca aggttgggcg tcaaaggccg tgtcagaccc ggagatcttc taatatcctc 301 ctgaggtaat aagcgcttcg tgaagtagtt caataattat gactagttat taagagagct 361 tgggtaaaag gtagcatcaa aagttagtaa gacgtaaagg aaggaaggaa aaccctcaga 421 taacgtgtct catgaaggtt acccctatcc ttctattctg aaattacttc tacctaacct 481 tgtatgaact ccgacctcaa agagtttgag aaccaattcc tttcttggag gaattcttgg 541 caaaattgga aggatctaga ttacctaaat ctagaatctt catcgagagc tgacttagct 601 cacaaccttc ggatcactgc atatcgagta gatctcggta acaaagcctt gtttgctcta 661 agcaaacaga actgtcttca tactctcgat cttagaacta aattgcagga gcaggaatta 721 cagctccagg agattggaaa actttccaaa attgttcgac aacagcgaaa cgatctgaag 781 ctgctgctct caaaacagga tcatttgcaa gaagagatcc ttcaactaag gcaggactat 841 ctcaaaagaa gacccctgtc taaggaagac gttgaagagc tggtgatcaa aatcagcgaa 901 caaccgaaat ttatagaaaa gcaaacagaa gccttaacgg aagagttagc gaagaaggtt 961 gacaaagtgg aagagctaat tcatcatcta agaaaaacaa ttcttggatg aactcagagg 1021 catacaaaga agcactccga gcaacatcca aaggctggcc agacaacggt attggattca 1081 cagaaaagga gtcaaccaca aacctttcca ctatttccag gcaacttaat acaatactct 1141 atactgtact gcaattacgt atagaagttg ctagtttgca ggaagagctc aggaagacaa 1201 aggtcgagca aagcccagac atcactaagc tcacagaaca attggacaaa gtccatttaa 1261 gctcaaaggg tgcagcttac aaagaagaca aaggaaagat caaagtcttc aagaaccctt 1321 ttgaccttct caaggagatt caatgacgac tcaaagagct catcttccat ccataaatgg 1381 aactgaggtc gccagtacct cacgacagcc tggaacccct ctggtagaag accagattcg 1441 ggactaccga cgttctgcac gtgcccgata tgaggcccag agaatgggca ggaaccttgt 1501 caacatagga cgaacaatag tcggaagaag acctagggag cataccctag ccttactcat 1561 ggaccctgag gtagagctac gaaggtccat gcaagagcga gcaagaacag tacctgctga 1621 agtcttgtat atgacacgac gagacgacat acaccacaga gtgtatcatt accgatctga 1681 ggaaggaatg ttaataacag gctcagatca gcaagaccgc accttcatca cagaagaatc 1741 atacgagcat ctggctcagg cggaaataga gtatatacat cttggtatac tccaggtacg 1801 atttcaaatt ctccatagaa gatatgcggg aactatggct ttacttgtat tcagggatac 1861 aagatggaac tccgatgaca ggagcataat agcagccatg gaggttgacc tgtctgaagg 1921 caaccaactt atatacatca tgccagacat gatgatgact atcaaagatt tctatagaca 1981 catccagatg tccatccaga caagaggata tgattcttgg acaggcgctg aagccaacct 2041 actaattaca aggagtatta cttcccggtt atccaatact cccaacgtag gattcgcctt 2101 ccaagtaaat aaagttgctg agtaccttcg ttctaaaggg atcaaggcta tagacgccat 2161 gaagtactca acaggacagt tccagcacag cagatggaac ttacgaccat ccacagtggt 2221 aattcctgta ctcccatcta ccttagtaac ttctactaac tatgatggca gtaccacact 2281 acaattcgga ggctaccaag ctgcttcatc atctcgaccg ccgatctaca acaacgagga 2341 tgatgaaatt gacgaagaac aacatattgt tgccgtcatc accatcattg atgatcaaga 2401 agatgactat cctgccctag cagctgtgga aaaacaaatt tttccagaaa acatggtggg 2461 agaagaggaa gcaattattt cctcattttt acaaaaactt gaactctctg aagatgaaga 2521 gagctactac ggcgacttgg agtctgaacc aaggagccac tacgaaatta atcatcttga 2581 tgacgactat ccagagttgc taaatgtgga aaaaatcctc tccacaaatg aatctgcaat 2641 aagcaactac cgagtacctc aagacgaaga aatgactgtc ccaggctatg cacctgctgg 2701 gagctctcgg ggttgggcta caaacattga tgatgcaatg ctacatcaaa ggaagcccaa 2761 aagatgggac aacagctcgg aatggttcca gctaccatcc gccaacgcaa gacagggctc 2821 aatatttgtc atgccctatg attttgatgt caaagtcttc gaaagatggg aaagttcggt 2881 attagtacac cttgccgaca agaactttga tactcccgaa gacaaggtca tatacataga 2941 gaatctactc ggggaatccg agaagaaagc cttcatgacc tggcgaatga agtacttacc 3001 cgagttcgaa gccctaaaag cagcagcact tggaaataat ggtacgcaaa acattctaaa 3061 ccaaataaga atgatatttt ttcttgaaaa tcccaaagta ggaacaacag atgaacagga 3121 tgcagcctat aagaccatca agagcctagt ctgcaatgaa atgaccgaca aggcagtcta 3181 taggtatatg aatgactatt tccacctggc atctaaaagc ggaaggatgt gggcaaacga 3241 ggagttatca acagaattct tcaccaaact cccacgacat ctcggagata aggtggagaa 3301 agcgttcaaa gaaagacacc ctacaaactc aattggggta acagctcgca ttgcttttac 3361 tagaaattat ttaaaagata tgtgtcagga ggcgttattt caaagccaac tgaagaagat 3421 gaacttttgc ggcaatacac ccgtacatgg agtatatgga aaaagtaaag aaggaggctt 3481 cagaaaatac ggagcaagaa agaatacatc ctacaagggt aagcctcata aatcgcatat 3541 tcgcattgga aagcagaagc acctaaacct caggaagaag ggctgcaagt gcttcgcttg 3601 cggagaaaca ggccactacg catcagaatg tacaaaccct aaaaagttca cccacagggt 3661 agctattctg gagtccttag accttcaaga aggacttgaa gtggtatccg tcgggatgga 3721 tgagtcagat gtatcagaca tctactctat ctcggaaaat gaagacaacc atcaaattac 3781 tgatgaatgg gatgtcttaa tgttacagga agaagaaata ccagaaccgt ctgagtatta 3841 cattggagaa cctggctgga gatctcagat gaaggtctca aaaactgaat tccactgcca 3901 gcatgagtgg aaatttgaca aagaagatag taaacactgc agagattgca agtttgaagc 3961 tcggcgagac aacagaatgg actgcagtaa gtgccaactt accatttgtg cactatgtac 4021 ttaccactgc ttcaaaatac ttattcccag gaaacagaca actcctagca tgaagcatga 4081 ctggagagaa ctagctgaac gacaaagcga actgctaagg aagttctgcc aaagagaaaa 4141 ggaactagaa caagaagtac aggagctaag acgagagata agtactctga aaacagacct 4201 agctaacctc tcggtaatac aagagacacc agaagaggat gaggaagaat tacaacgctt 4261 aaggcaggag aatactcttc ttgaattact aaaccaaaaa cagcaaaagg acatagaagc 4321 actgcaacaa cagaatgagc tacttctaca acttgcaaag attgacaaga aagagattga 4381 aagcctcaga agtcaacatc ctctccctgt actacacctt gacgactttg cggtaacagc 4441 agtacagcca agcaacaacc tgctgaatat caaggtaatc gttgaaatag atggaaagca 4501 attaccctta aatgctattc ttgacacagg agcagcaatc tgtgtatgca atggagaagt 4561 aatcccacaa gaatacagaa gatcctctct tacggattcc ttgatccaag gggtaaatgg 4621 agcaacacga gtcaacgaaa tcctgaagga cggaaaactc tgggttggtg atcagtactt 4681 taggataccc agaacttata ttatgccaac aatgcataag ggcctcgaat ttatcattgg 4741 catgaatttt atcaaagcca tggaaggtgg cttacggatc gaaaagggag aagtaacttt 4801 ttataagtta gtcacgacgg tcaatacctc accaaagcca catgaggtat gcttacttga 4861 tgagttggat cttgagttac ctgaatacta tgacatatgt gcagctattc caagacaagg 4921 gagcatcaat gaggaattta tttcaccctc agaaattgac cgactcaaaa gattgggatt 4981 cataggggaa gaaccattaa agcactggaa aaagaatcag atcaagtgca aactcgaaat 5041 caagaatcct gacctgatca tagaagaccg tcccctcaaa catgttacac cagcaatgaa 5101 ggagaccatg actaaacacg tacaaaggct actggatata aaggttatca gaccatctac 5161 tagtaagcat aggactaccg ctataatggt taattctggt actgaaattg atcctattac 5221 tggtgctgaa aagaaaggca aagaacgtct tgtctttaat tataaaaggc ttaatgacaa 5281 tactgaaaag gatcagtatt ccttacctgg gataaacaca atcatagcta gaatcagcca 5341 ttcaaaaata tattctaaat ttgacttgaa gagcggtttt catcaagtag ctatggagga 5401 ggaatctatc ccatggacgg ccttttgggc tattaacggg ttatacgaat ggctcgtaat 5461 gccgtttggt ctgaagaacg cacctgccat atttcaacga aagatggaca actgcttccg 5521 aggtacagaa aaatttatag ctgtttacat agatgatatt ctaatctttt cagatagcaa 5581 ggaagcccat cgaacccatc tcagacaatt catcaccata tgtgaagaaa atgggctggt 5641 actaagccca acgaagatga agataggagt ccaacaagtg gatttcttgg gtgcaaccat 5701 tggcgattct aaagtaaggc ttcagcctca catagtcaaa aaagtgctag aaacaaagga 5761 agaaagcctg tctgaaacaa aggccttaag aagatggtta ggcatactca attatgccag 5821 agcatatatt cctgatcttg gaaaaatcct aggtccctta tactcaaaaa cttcaggaaa 5881 aggggagcga aaactcaatc accaagacat gaagataatt caccagatca aggagaaggt 5941 aaaaaatctc cctgaattag aggttcctcc accagagtcc atcatactaa ttgaaacaga 6001 cggatgtatg gatggttggg gtggcatttg caaatggaag ttaaacaaag gggaaccccg 6061 atccgctgaa aagatctgtg cttatgcaag tggacgtttc aaccccatca aaggagctat 6121 tgacgctgaa atacaggctg ttatctacag tctagaaaaa tttaagattt actatctcga 6181 caaaaaggag cttattttaa ggactgacag caaggcaatt gtcaggttct acgagaaatg 6241 ttcagaacac aaaccctctc gtgtccgatg gatgactcta actgactaca tctcgggatg 6301 cggagttaag gtatattttg aacacattga tggaaaagat aatacacttg cagacgaact 6361 atcacgactt gttcaagcaa ttctcatcaa caaagaagaa tctcctacaa tactatctct 6421 aatcaaagca acaacggagg tattacaaaa ggaaaatcct atttccagga gtagattagc 6481 tctatgcatt tccagagcac tgggtaacaa atatcaagtc aatttcataa cttgggaaca 6541 accccagctg aagtgtgcct gtggggaaaa tgccgtactc cttacttcac ataccagccg 6601 aaatccagga cggagatttt atagatgcgg taccaacact tgtcatgtat ggtactgggc 6661 tgatctaatc gaagattata ttgcgcaact tagcaatctt cagaatcttg actcaggaca 6721 agcagatgat gaaggatggg cctatcaaac agaagatctg atcaacccag aagatctggc 6781 caactccgac atagacgacc ctccagaaga ctcaggacta ttccaccgac atgatgacta 6841 aggcggacgt ggtggaccca gcaataatga aggaatccaa ttccttactt caccgggttc 6901 attattaaag agcctttaca gctcataccc ttattaataa tgttagtgct tgtactattg 6961 tgctttgcca gcacatactg gcgtgtaaag gcatctggtt gtccccagaa ggcctaaagt 7021 tagtgcgttc caacgcacat ctgtgtgtaa aggtatctgg ctgtttccag acgctacctc 7081 cctcttttct cctcccgtct atataaggag gcagaaccta agtgtttcag gcatcgaggg 7141 aaatacccat ctgcctaatc cacttccagt gttttccaaa gcagctgaag ttttcagtct 7201 gtgagtagaa agcaagatcc ttgtaagaat ttttgagaag tttatattcg atttctcctc 7261 atc //