LOCUS HQ659760 7768 bp DNA circular VRL 05-APR-2011 DEFINITION Banana streak Imove virus strain IRFA910, complete genome. ACCESSION HQ659760 VERSION HQ659760.1 KEYWORDS . SOURCE Banana streak IM virus ORGANISM Banana streak IM virus Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus. REFERENCE 1 (bases 1 to 7768) AUTHORS Geering,A.D., Parry,J.N. and Thomas,J.E. TITLE Complete genome sequence of a novel badnavirus, banana streak IM virus JOURNAL Arch. Virol. 156 (4), 733-737 (2011) PUBMED 21347843 REFERENCE 2 (bases 1 to 7768) AUTHORS Geering,A.D.W. TITLE Direct Submission JOURNAL Submitted (29-NOV-2010) Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, 41 Boggo Road, Dutton Park, Queensland 4102, Australia FEATURES Location/Qualifiers source 1..7768 /mol_type="genomic DNA" /country="Australia" /collection_date="Dec-1999" /host="Musa AAB Group cv. IRFA 910" /PCR_primers="fwd_name: IM-F1, fwd_seq: tgccaacgaatactacatcaac, rev_name: IM-R1, rev_seq: cacccagacttttctttctagc" /db_xref="taxon:1016853" /strain="IRFA910" /organism="Banana streak IM virus" CDS 668..1198 /codon_start=1 /protein_id="ADV58680.1" /translation="MDSYWDQEFEKYKNSHAKSISDLAYLNLETADKVSNKDLAFNLH INTYRSDLGFKVAIHSLSKNRELLIQNRKLLEEQELQLQEVHKLSKVIRSQRSDLKDI LKRQDVLTKELQALREDYLRRKPLSKEDVEELVVRISEQPKFIEKQTEALTEELTKEV QALKVIIHNFEQRLLG" /product="unknown" /note="ORF1" CDS 1195..1587 /codon_start=1 /protein_id="ADV58681.1" /translation="MSLAGSKATAIYQEALSSTSAGWEDSGVGFTDKGTISTATLSRQ LNSLLFLVIKQNQLITTLSEELTQVHNKVKIIEGKGPSKLTPSSEIETINAKLKAIQE IQKSQPKKETSSGSIKVFEDPYKILRRL" /product="virion-associated protein" /note="minor capsid protein; ORF2" CDS 1590..7202 /codon_start=1 /protein_id="ADV58682.1" /translation="MASRPRVLGSTTRTMVAEPGTPLVDDQIRDYRNAARAAYEAQRV ARQTGNIIGRIVGRQPREHTLAMIVDPNSELERSLAHRARTIPAEVLYMTQRGEPTNR VYRNRTEERMLVTQGQQDRSFILQESYEALLEAGFEYIHLGVLQVRIQIMHRSYAGTM ALVVFRDTRWTQEDAEDRSIIAAMEADLSQGHQLIYVIPDIMMTIRDFYQHIQISILT KGYNGFQGESNLLVTRSCRCRLSNVPNVGFQYNIQNVVEFLKSKGVKALNATKISTKK FQGGEWNIKPSEVVVPMQPTRMITRVNYDSSRSIRFGDYEASTSSAPPTYSTNDDEDE VLGEIHQVNMITFLEDDDEFDYPQLAALEQIFAPESGVGEEDDTIIEFLDNLRLSDEE EEYNGDNETETSTPRSKYNIFTFEDDYPQLQKLDNLVLSTNESAISSYNPGDIDMEGV GPGYAPATGGTSYTGAGTSDFPYPRRPRKWENSSEWFNLPMANARQASVFIMPQDFDT KVFERWESSVLLHMTDKIFDDPQDKLTYIENLLGESEKKMFITWRMKFTTEYEEMRAN ALGSNGTQSILNQIRMIFFLENPQVGTTNSQDAAYKTLKQLVCTEMSGPAIYRYLNDY FHLSAKSGRAWASEELSKEFFTKLPKGLGDRVEKSFKEKYPNNTIGVAARITFTRAYM KEICQEAVFQSQLKRLDFCKGTPVHGLYGKDKSYGRRYGVRKSTSYKGKPHKSHVRID KKKHLTMKRKDCKCFACGDIGHFASECPNPKKLMHRVQILQSLELEDGIDVISVGFDE SDVSDIYSVSEGEDNYQFKHEDFGVVDHDVFIMTIEERNHLVPTTSEWRAAMKVTKEE YLCLHQWEFSSERAGYCRACKHQALKGSRADCSTCKITICSLCKPHYYKDAAPIPVQK KVVKDDWMNMAKRFMDSWKKAEDEKMELKEELNDIKEQIKFSKGKEKEVCTEEIPQIY TQKLELLENENSLLKDLEEERKIQDIQVFKEIQAMRKEIESLKAAKEEENKAHEEEKK ALKEEILALKKSITEIQKPVELVNNVEEHLVLTGKQRNNLLNIKITIEIKEKKITMNA ILDTGAAICVCDGQIVDNYFRRPSMMNAFIKGVNGITNVQEILEEGRIWIGNQWFRIP RTYVMPQLSEGLHFIIGMNFIRAMEGGIRIEQGIVTFYKMITQAQAPPITHDISYIEE LELELPLYYDICAANPIGGMFNSDLISPAEIQKLKDLGYIGEEPLKHWAKNQVRCRIE VKNPDLIIEDRPLKHVTPAMKESMKRHVDKLLELKVIRPSESKHRTTAIIVQSGTEID PLTGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIISRIGNSKIYSKFDLKSGFHQ VAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEEFIAVYIDDI LIFSDNISDHRKHLKKFLEICKANGLVLSPTKMKIGTPEIDFLGATIGNSKIKLQPHI IKKVIETRDEELKEVKGLRKWLGVLNYARAYIPNLGKTLGPLYSKTSGNGERRMNSQD WKIVQNIKTQVQRLPDLEIPPTSAIMILETDGCMEGWGGICKWKAKPSDTRLNEKICA YASGSYNPIKSTIDAEVHAVINSLEKFKIYYLDKKELIIRTDSQAIVAFYKKQADHKP SRTRWLMLIDYITGLGINVKFEHIDGKENVLADTLSRLVQVLVTKIHHPAEEQLVDAV LEVLKNPKEVAIKKVNHFILLTERWIAGFKDEHPVNVLTLDEETRLRCSCQDPITKQG MFAALLQSHTATNPGRWFYKCERNRCHLWIWKDLLDQYANEYYINMGLNSLLLNMDWP DEESDPLDPPSPARTEDIFDLANVSNDD" /product="polyprotein" /note="contains movement protein, coat protein and polymerase protein; ORF3" ORIGIN 1 tggtatcaga gctaagtttt ctgtaagttt ttatggcttt tatggggtaa ttcccttaga 61 taggagccta agggctctgc tatgcttcat ttttagaaaa tagctgtgta agtagacttg 121 cataatgatt ctagaaagac taagaagagt attctatgtt atgatactac ttgtgaaagg 181 aaaaaggatt tcttgcgttt ccaagttcta ctgaaataat gtccatctga gaaatgccta 241 atatatagtg aaagggagaa aaatgacttg agttgggagt gttagtttat cggacttgga 301 gcaaaagaac cagaacctta cctggcatgt aagacccaag gggcagaagc tggagaaccc 361 tggtgtgagt ttcttattcg gtattattaa aactctagta tcctcaaaac ttcgtgaagt 421 attccttgaa actataatat tagcaatttg atggtgttca ctagatcaca aaaaaaattt 481 gagttgtgca agaatgaaag attccgatca catgatagtt gactaaactg gaagaccctt 541 ttaagtctga aagaaaaaca gatgcatgag ctacctctag aactggctac aatctattat 601 gagcatggca tcccaaagga ctactcctat ctgtctcaag aatttggttt aaaaaccttt 661 gttaactctg gattcctatt gggatcagga atttgaaaaa tataaaaatt cacacgcgaa 721 gtctatatca gatcttgctt atcttaattt agaaactgct gacaaggtct ctaataaaga 781 ccttgctttt aatctacata tcaataccta ccgcagtgac ctcggtttca aagttgctat 841 acattcttta tccaaaaatc gtgaactact aatccagaac aggaagcttc tggaagaaca 901 agagcttcaa cttcaagaag ttcacaagct ctccaaagtt atacgttcac aacgctcgga 961 tcttaaagac atccttaaaa ggcaggacgt tcttacgaag gagcttcagg ctcttcgtga 1021 ggattattta aggagaaaac ctctcagcaa ggaggacgtt gaggaactgg ttgttcgcat 1081 ctcagaacag ccaaagttta ttgaaaaaca aacagaggcc ctcactgagg aacttacaaa 1141 agaggtgcaa gctcttaagg ttatcattca taacttcgag caaaggctct tgggatgagc 1201 cttgcaggca gcaaggcaac tgctatttac caagaagcac tatcctccac ctcagcaggc 1261 tgggaagact ctggtgtcgg tttcactgat aaaggcacca taagcactgc aacgttatcc 1321 aggcagctaa attctctact attcctagtg atcaagcaga atcagctcat cactacgtta 1381 tctgaggagc tgacccaagt ccacaacaag gtcaagataa ttgaaggcaa aggaccatca 1441 aaactcacgc cttcaagtga aattgaaact atcaacgcca agctcaaagc tatccaagaa 1501 atccagaaga gtcagcccaa aaaggagact tcttcaggat ccatcaaagt ctttgaggac 1561 ccgtataaaa tccttagaag attgtaaaaa tggcgtcaag accaagagtt ctgggctcca 1621 caaccagaac tatggttgca gaaccaggga cccccctggt tgatgatcag atccgggatt 1681 accggaatgc tgcaagagcc gcctatgaag ctcagagggt tgccagacaa actggcaaca 1741 tcatcggaag aattgttgga cgacaaccaa gggagcatac ccttgcaatg atcgtagatc 1801 ccaacagtga gctggagcgc tcactggctc atcgggcaag aaccataccg gctgaagtcc 1861 tttacatgac ccagcgcggt gagccaacaa accgggtcta cagaaatcgt acggaagaaa 1921 ggatgttagt cacacaagga cagcaagaca ggtcctttat tcttcaagaa tcctatgagg 1981 cgttactgga agcaggattt gagtacatcc acctcggagt actacaagtc cgtatccaaa 2041 tcatgcacag atcctacgca ggaacaatgg ccctggtagt ctttagggat accaggtgga 2101 cgcaagaaga tgctgaagat agatccatta ttgccgccat ggaagctgat ctttctcaag 2161 gacatcagct tatatatgta atcccagaca tcatgatgac catccgggat ttctatcagc 2221 atatacaaat aagcatctta accaagggat acaatgggtt ccaaggagag tccaacctct 2281 tggtaaccag aagctgtcgc tgcagattaa gcaacgttcc caacgttggc ttccagtaca 2341 acatccaaaa tgtggtagaa ttcctaaaat caaagggtgt aaaagccctc aatgccacaa 2401 aaatcagcac caaaaaattc caaggaggcg aatggaacat caagccttca gaagtggttg 2461 tacctatgca accaacaagg atgatcacaa gagtcaacta tgactcctcc agaagcatcc 2521 gctttggaga ctatgaggca agcacatcat cagccccacc gacatactcc accaatgatg 2581 atgaagatga agtacttgga gaaattcacc aagtaaatat gattacattc ctcgaagatg 2641 atgatgaatt cgattatcct cagttagcag ctttagagca aatatttgct ccagaaagcg 2701 gggtgggaga ggaagacgac acaatcatcg aattcttaga caacttgaga ctctctgatg 2761 aggaagaaga gtacaatggg gacaatgaaa ccgaaaccag taccccaaga agtaagtaca 2821 acattttcac cttcgaagac gactatcctc aactccagaa acttgataat cttgttctct 2881 ccaccaatga gtctgcaatc agcagctaca accctggaga tattgatatg gaaggagtag 2941 gtccaggata tgcacctgcg acaggaggaa ccagctatac tggagctggg acatctgatt 3001 tcccataccc aagaaggcca aggaaatggg aaaatagttc ggaatggttc aatttaccta 3061 tggctaatgc aagacaagcc tccgtattta tcatgccaca agactttgac accaaagtat 3121 tcgagcgatg ggaaagttct gtcctcctac atatgacaga caaaatcttc gatgatcccc 3181 aagacaagct tacatacatt gagaatttac taggggaatc ggaaaagaag atgttcatca 3241 cttggaggat gaagttcact actgaatatg aagaaatgcg tgcaaacgca ttaggctcca 3301 acggaacgca aagtatcctg aaccagatca ggatgatatt ctttttggaa aatcctcaag 3361 tcggcaccac caatagccag gatgccgcgt acaagacatt aaagcagctg gtatgcacag 3421 aaatgtcggg accagcaata tacagatacc tcaatgacta cttccatcta tcagcaaaat 3481 ccggaagagc ttgggcaagt gaagaactct caaaagaatt ctttacgaaa ctcccaaagg 3541 gattgggaga cagagttgag aaaagcttta aagaaaaata cccaaacaat acaattgggg 3601 tagcagcaag aatcactttt accagagcct atatgaaaga gatatgccaa gaagcagtgt 3661 tccagagcca actcaagaga ttggatttct gcaagggaac accagtccat gggctatacg 3721 gcaaggataa atcctacgga agaagatatg gggtacgaaa gagcacctcg tacaaaggaa 3781 aaccccataa gtcacatgtg agaatcgaca aaaagaagca tctcacaatg aagagaaagg 3841 actgcaagtg ctttgcttgc ggtgatatcg gtcatttcgc atcagaatgc ccgaatccca 3901 agaagctgat gcacagagtt cagatcctac aatcacttga gctagaggac ggtattgatg 3961 tcatctcagt agggtttgat gaatctgacg tctcagacat atattcagta tctgaagggg 4021 aagataacta ccagttcaaa catgaagatt tcggagtagt tgaccatgac gtctttataa 4081 tgactattga ggaaagaaac cacctagtcc ctacaacatc agaatggcgt gcagccatga 4141 aagtcacaaa ggaagaatat ctatgcctac accaatggga gtttagctca gaaagggcag 4201 gatactgtag agcctgcaag caccaggcct tgaaaggtag cagggcagat tgttcaacct 4261 gcaagattac tatctgctca ttgtgcaagc cccactatta caaagatgca gcgcctattc 4321 cagtccaaaa gaaggtcgta aaagatgatt ggatgaacat ggcaaagaga ttcatggaca 4381 gctggaaaaa ggctgaagat gaaaaaatgg aactgaagga agaactcaat gacatcaagg 4441 agcaaatcaa gttctccaaa ggcaaagaaa aagaggtatg cactgaagaa atccctcaga 4501 tttatactca aaaattagaa ctccttgaga atgaaaatag cttgctcaaa gacctggagg 4561 aagaaagaaa gatacaggat atacaggttt tcaaagagat ccaagctatg aggaaagaga 4621 ttgagagcct taaggcagca aaggaagaag aaaataaggc tcatgaggag gaaaagaagg 4681 ctcttaagga agagatttta gccttaaaga aaagcatcac tgaaattcag aagccagtgg 4741 aactagtgaa caacgtggag gaacatctgg ttctgacagg aaagcaaaga aataatctcc 4801 tcaacatcaa aattacaata gagataaaag aaaagaagat caccatgaat gcgatcttag 4861 acacaggagc tgccatatgt gtctgtgatg gtcagatagt tgacaactac ttcaggagac 4921 catcaatgat gaacgccttc ataaagggag taaatgggat caccaacgta caagaaatcc 4981 tagaggaagg aagaatctgg attggcaatc aatggttcag gatccccaga acatacgtta 5041 tgccacaact ctctgaagga cttcacttta tcatagggat gaacttcatt cgtgcaatgg 5101 aaggaggaat tcgtattgaa caagggatag taaccttcta caaaatgatt actcaagctc 5161 aggcaccccc tatcactcat gacatctctt acattgaaga attggaatta gagctgccac 5221 tctactatga catctgtgca gccaacccca taggagggat gtttaacagt gacttgatat 5281 caccagctga gatccagaag ctcaaagacc tcggatatat cggggaagaa cccctgaagc 5341 attgggctaa aaatcaagtc agatgtagaa tagaggtcaa aaaccctgac ctcatcatcg 5401 aggacagacc tctgaaacat gtcacccctg ctatgaagga atcaatgaag aggcacgtgg 5461 acaaactact cgagctgaaa gtaattcgac cctcagaaag taaacataga accactgcaa 5521 tcattgttca gtcgggtacg gagatagacc ctcttacagg aaaagagaaa agagggaagg 5581 agaggctggt attcaactac aagcgcctca atgataacac ggagaaagac caatactcat 5641 taccaggtat caacaccatc attagtagga ttggcaattc taaaatctat agcaaatttg 5701 atcttaaatc aggatttcac caagtcgcca tggaccctga aagtatacct tggacggcgt 5761 tctgggctat agacggactg tacgagtggc ttgttatgcc atttggttta aagaatgcac 5821 ctgccatctt ccagagaaag atggataatt gcttcagagg aaccgaggaa ttcattgcag 5881 tctacataga cgatatactc attttttctg ataacatttc tgatcatagg aagcatctta 5941 agaagttcct ggaaatttgc aaagcaaatg ggcttgttct cagcccaaca aaaatgaaga 6001 ttggcacacc ggaaattgac ttccttggag caaccattgg taactccaaa atcaaattac 6061 agccccacat catcaagaag gtcattgaaa caagagatga ggagctgaaa gaagttaaag 6121 gattaaggaa atggttggga gtccttaatt atgccagggc atacatccct aacctcggga 6181 aaacattggg accgctctat tcaaaaactt ctggcaacgg agagagaaga atgaatagtc 6241 aagattggaa gattgtacaa aacatcaaaa ctcaggtaca aagacttccc gatctagaaa 6301 tccctcccac tagtgcaata atgatacttg aaacagacgg ttgcatggaa gggtggggag 6361 gaatttgcaa atggaaggca aagccatcag atacaaggct gaatgaaaaa atctgtgcct 6421 acgccagcgg cagttacaat ccgatcaaga gtacaattga cgctgaagtc cacgccgtaa 6481 taaacagctt agaaaaattc aaaatatact acctggataa gaaagagctg atcatcagaa 6541 cggatagcca ggctattgtg gcattctaca agaagcaagc tgatcacaaa ccatcgagga 6601 caaggtggtt aatgcttata gattacatca caggccttgg tatcaacgta aagtttgagc 6661 acattgatgg aaaggaaaat gtgcttgctg acacattgtc aagattggta caagtattag 6721 ttaccaaaat tcaccatcca gctgaggaac aattggtgga tgcagttctc gaagtcctca 6781 aaaatccaaa ggaagtggcc atcaagaagg taaaccattt tatcttacta actgaaagat 6841 ggattgcagg attcaaggac gaacatcctg tgaacgttct gactcttgac gaagaaacaa 6901 ggctacgatg ctcatgccaa gatcccatca caaaacaagg gatgtttgct gcccttctgc 6961 aaagtcacac tgctacaaat ccaggacgat ggttctacaa atgtgagcga aacagatgtc 7021 acctctggat atggaaagac ctcttggacc agtatgccaa cgaatactac atcaacatgg 7081 gcctcaactc tttactgctc aacatggatt ggccagatga agagtcagat ccactggatc 7141 ctccaagccc agctagaacc gaagatattt ttgacttggc aaacgtaagc aatgacgact 7201 aaacaagatt cggtgcggaa atggtggacc cataatggta caaatctagg tgcaaatcag 7261 agtcatgcac atagctttat ttcctttaaa aatggattga gccccgggga gccgtccgat 7321 tgtttgataa aaatgtctgg gtgcaatgct ttgtcatgca catgactact taaaggttgt 7381 cggtcggtgc ctgcgtgcat ctcaagcaac cagtacgcta gaaagaaaag tctgggtgca 7441 atgcgctgtc atgcacatga ctactctagc tttattaaag tttgtcggtt gcattattgg 7501 tgcctgcgtg catcactact ctagctttat taaagtttgt cggttgcatt attggtgcct 7561 gcgtgcatcc gaagcaacct ttgcctttct ctatctataa gagaaggcct tgtaactcag 7621 ttgcaagcat gcaattccca cgcaagctta cttctgaatt ctccagaaat caaagtcaat 7681 agaatccttt tcttacagat gttcttgaaa tctctatgag caatcattag acgagtaaag 7741 aacaagatcc gcaaagcccc cccctata //