LOCUS KJ013508 7768 bp DNA circular VRL 13-NOV-2014 DEFINITION Banana streak IM virus, complete genome. ACCESSION KJ013508 VERSION KJ013508.1 KEYWORDS . SOURCE Banana streak IM virus ORGANISM Banana streak IM virus Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus. REFERENCE 1 (bases 1 to 7768) AUTHORS Rajeswaran,R., Seguin,J., Chabannes,M., Duroy,P.O., Laboureau,N., Farinelli,L., Iskra-Caruana,M.L. and Pooggin,M.M. TITLE Evasion of short interfering RNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses JOURNAL J. Virol. 88 (19), 11516-11528 (2014) PUBMED 25056897 REFERENCE 2 (bases 1 to 7768) AUTHORS Rajeswaran,R., Seguin,J., Chabannes,M., Duroy,P.-O., Laboureau,N., Farinelli,L., Iskra-Caruana,M.-L. and Pooggin,M.M. TITLE Direct Submission JOURNAL Submitted (31-DEC-2013) Department of Environmental Sciences, Botany, University of Basel, Hebelstrasse 1, Basel, BaselStadt 4056, Switzerland COMMENT ##Assembly-Data-START## Assembly Method :: Velvet v. 1.2.07; Oases v. 0.2.08; Seqman module of Lasergene DNASTAR v. 8.1.2 Assembly Name :: BSIMV-[MP] Coverage :: 10x Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7768 /mol_type="genomic DNA" /country="France: Montpellier" /collection_date="Nov-2010" /host="Musa acuminata cv. Cavendish, inoculated with BSIMV 15 years ago using mealybugs and then propagated vegetatively in a greenhouse" /db_xref="taxon:1016853" /isolate="MP" /organism="Banana streak IM virus" CDS 667..1197 /codon_start=1 /protein_id="AHM92952.1" /translation="MDSYWDQEFEKYKNSHAKSISDLAYLNLETADKVSNKDLAFNLH INTYRSDLGFKVTIHSLSKNRELLIQNRKLLEEQELQLQEVHKLSKVIRSQRSDLKDI LKRQDVLTKELQALREDYLRRKPLSKEDVEELVVRISEQPKFIEKQTEALTEELTKEV QALKVIIHNFEQRLLG" /product="hypothetical protein" /note="small protein of unknown function; ORFI" CDS 1194..1586 /codon_start=1 /protein_id="AHM92953.1" /translation="MSLAGSKATAIYQEALSSTSAGWEDSGVGFTDKGTISTATLSRQ LNSLLFLVIKQNQLITTLSEELTQVHNKVKIIEGKGPSKLTPSSEIETINAKLKAIQE IQKSQPKKETSSGSIKVFEDPYKILRRL" /product="hypothetical protein" /note="small protein of unknown function; ORFII" CDS 1589..7201 /codon_start=1 /protein_id="AHM92954.1" /translation="MASRPRVLGSTTRTMVAEPGTPLVDDQIRDYRNAARAAYEAQRV ARQTGNIIGRIVGRQPREHTLAMIVDPNSELERSLAHRARTIPAEVLYMTQRGEPTNR VYRNRTEERMLVTQGQQDRSFILQESYEALLEAGFEYIHLGVLQVRIQIMHRSYAGTM ALVVFRDTRWTQEDAEDRSIIAAMEADLSQGHQLIYVIPDIMMTIRDFYQHIQISILT KGYNGFQGESNLLVTRSCRCRLSNVPNVGFQYNIQNVVEFLKSKGVKALNATKISTKK FQGGEWNIKPSEVVVPMQPTRMITRVNYDSSRSIRFGDYEASTSSAPPTYSTNDDEDE VLGEIHQVNMITFLEDDDEFDYPQLAALEQIFAPESGVGEEDDTIIEFLDNLRLSDEE EEYNGDNETETSTPRSKYNIFTFEDDYPQLQKLDNLVLSTNESAISSYNPGDIDMEGV GPGYAPATGGTSYTGAGTSDFPYPRRPRKWENSSEWFNLPMANARQASVFIMPQDFDT KVFERWESSVLLHMTDKIFDDPQDKLTYIENLLGESEKKMFITWRMKFTTEYEEMRAN ALGSNGTQNILNQIRMIFFLENPQVGTTNSQDAAYKTLKQLVCTEMSGPAIYRYLNDY FHLSAKSGRAWASEELSKEFFTKLPKGLGDRVEKSFKEKYPNNTIGVAARITFTRAYM KEICQEAVFQSQLKRLDFCKGTPVHGLYGKDKSYGRRYGVRKSTSYKGKPHKSHVRID KKKHLTMKRKDCKCFACGDIGHFASECTNPKKLMHRVQILQSLELEDGIDVISVGFDE SDVSDIYSVSEGEDNYQFKHEDFGVVDHDVFMMTIEERNHLVPTTSGWRAAMKVTKEE YLCLHQWEFSSERAGYCRACKHQALKGSRADCSTCKITICSLCKPHYYKDAAPIPVQK KVVKDDWMNMAKRFMDSWKKAEDEKMELKEELNDIKEQIKFYKGKEKEVCTEEIPQIY TQKLELLENENSLLKDLEEERKIQDIQVFKEIQAMRKEIESLKAAKEEENKAHEEEKK ALKEEILALKKSITEIQKPVELVNNVEEHLVLTGKQRNNLLNIKITIEIKEKKITMNA ILDTGAAICVCDGQIVDNYFRRPSMMNAFIKGVNGITNVQEILEEGRIWIGNQWFRIP RTYVMPQLSEGLHFIIGMNFIRAMEGGIRIEQGIVTFYKMITQAQAPPITHDISYIEE LELELPLYYDICAANPIGGMFNSDLISPAEIQKLKDLGYIGEEPLKHWAKNQVRCRIE VKNPDLIIEDRPLKHVTPAMKESMKRHVDKLLELKVIRPSESKHRTTAIIVQSGTEID PLTGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIISRIGNSKIYSKFDLKSGFHQ VAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEEFIAVYIDDI LIFSDNISDHRKHLKKFLEICKANGLVLSPTKMKIGTPEIDFLGATIGNSKIKLQPHI IKKVIETRDEELKEVKGLRKWLGVLNYARAYIPNLGKTLGPLYSKTSGNGERRMNSQD WKIVQNIKTQVQRLPDLEIPPTSAIMILETDGCMEGWGGICKWKAKPSDTRLNEKICA YASGSYNPIKSTIDAEVHAVINSLEKFKIYYLDKKELIIRTDSQAIVAFYKKQADHKP SRTRWLMLIDYITGLGINVKFEHIDGKENVLADTLSRLVQVLVTKIHHPAEEQLVDAV LEVLKNPKEVAIKKVNHFILLTERWIAGFKDEHPVNVLTLDEETRLRCSCQDPITKQG MFAALLQSHTATNPGRWFYKCERNRCHLWIWKDLLDQYANEYYINMGLNSLLLNMDWP DEESDPLDPPSPARTEDIFDLANVSNDD" /product="polyprotein" /note="contains viral coat protein and proteins with homology to an aspartic protease, reverse transcriptase and RNase H" ORIGIN 1 tggtatcaga gctaagtttt ctgtaagttt ttatggcttt tatggggtaa ttcccttaga 61 taggagccta agggctctgc tatgcttcat ttttagaaaa tagctgtgta agtagacttg 121 cataatgatt ctagaaagac taagaagagt attctatgtt atgatactac ttgtgaaagg 181 aaaaaggatt tcttgcgttt ccaagttcta ctgaaataat gtccatctga gaaatgccta 241 atatatagtg aaagggagaa aaatgacttg agttgggagt gttagtttat cggacttgga 301 gcaaaagaac cagaacctta cctggcatgt aagacccaag gggcagaagc tggagaaccc 361 tggtgtgagt ttcttattcg gtattattaa aactctagta tcctcaaaac ttcgtgaagt 421 attccttgaa actataatat tagcaatttg atggtgttca ctagatcaca aaaaaatttg 481 agttgtgcaa gaatgaaaga ttccgatcac atgatagttg actaaactgg aagacccttt 541 taagtctgaa agaaaaacag atgcatgagc tacctctaga actggctaca atctattatg 601 agcatggcat cccaaaggac tactcctatc tgtctcaaga atttggttta aaaacctttg 661 ttaactctgg attcctattg ggatcaggaa tttgaaaaat ataaaaattc acacgcgaag 721 tctatatcag atcttgctta tcttaattta gaaactgctg ataaggtctc taataaagac 781 cttgctttta atctacatat caatacctac cgcagtgacc tcggtttcaa agttactata 841 cattctttat ccaaaaatcg tgaactacta atccagaaca ggaagcttct ggaagaacaa 901 gagcttcaac ttcaagaagt tcacaagctc tccaaagtta tacgttcaca acgctcggat 961 cttaaagaca tccttaaaag gcaggacgtt cttacgaagg agcttcaggc tcttcgtgag 1021 gattatttaa ggagaaaacc tctcagcaag gaggacgttg aggaactggt tgttcgcatc 1081 tcagaacagc caaagtttat tgaaaaacaa acagaggccc tcactgaaga acttacaaaa 1141 gaggtgcaag ctcttaaggt tatcattcat aacttcgagc aaaggctctt gggatgagcc 1201 ttgcaggcag caaggcaact gctatttacc aagaagcact atcctccacc tcagcaggct 1261 gggaagactc tggtgtcggt ttcactgata aaggcaccat aagcactgca acgttatcca 1321 ggcagctaaa ttctctacta ttcctagtga tcaagcagaa tcagctcatc actacgttat 1381 ctgaggagct gacccaagtc cacaacaagg tcaagataat tgaaggcaaa ggaccatcaa 1441 aactcacgcc ttcaagtgaa attgaaacta tcaacgccaa gctcaaagct atccaagaaa 1501 tccagaagag tcagcccaaa aaggagactt cttcaggatc catcaaagtc tttgaggacc 1561 cgtataaaat ccttagaaga ttgtaaaaat ggcgtcaaga ccaagagttc tgggctccac 1621 aaccagaact atggttgcag aaccagggac ccccctggtt gatgatcaga tccgggatta 1681 ccggaatgct gcaagagccg cctatgaagc tcagagggtt gccagacaaa ctggcaacat 1741 catcggaaga attgttggac gacaaccaag ggagcatacc cttgcaatga tcgtagatcc 1801 caacagtgag ctggagcgct cactggctca tcgggcaaga accataccgg ctgaagtcct 1861 ttacatgacc cagcgcggtg agccaacaaa ccgggtctac agaaatcgta cggaagaaag 1921 gatgttagtc acacaaggac agcaagacag gtcctttatt cttcaagaat cctatgaggc 1981 gttactggaa gcaggatttg agtacatcca cctcggagta ctacaagtcc gtatccaaat 2041 catgcacaga tcctacgcag gaacaatggc cctggtagtc ttcagggata ccaggtggac 2101 gcaagaagat gctgaagata gatccattat tgccgccatg gaagctgatc tttctcaagg 2161 acatcagctt atatatgtaa tcccagatat catgatgacc atccgggatt tctatcagca 2221 tatacaaata agcatcttaa ccaagggata caatgggttc caaggagagt ccaacctctt 2281 ggtaaccaga agctgtcgct gcagattaag caacgttccc aacgttggct tccagtacaa 2341 catccaaaat gtggtagaat tcctaaaatc aaagggtgtg aaagccctca atgccacaaa 2401 aatcagcacc aaaaaattcc aaggaggcga atggaacatc aagccttcag aagtggttgt 2461 acctatgcaa ccaacaagga tgatcacaag agtcaactat gactcctcca gaagcatccg 2521 ctttggagac tatgaggcaa gcacatcatc agccccaccg acatactcca ccaatgatga 2581 tgaagatgaa gtacttggag aaattcacca agtaaatatg attacattcc tcgaagatga 2641 tgatgaattc gattatcctc agttagcagc tttagagcaa atatttgctc cagaaagcgg 2701 ggtgggagag gaagacgaca caatcatcga attcttagac aacttgagac tctctgatga 2761 ggaagaagag tacaatgggg acaatgaaac cgaaaccagt accccaagaa gtaagtacaa 2821 cattttcacc ttcgaagacg actatcctca actccagaaa cttgataatc ttgttctctc 2881 caccaatgag tctgcaatca gcagctacaa ccctggagac attgatatgg agggagtagg 2941 tccaggatat gcacctgcga caggaggaac cagctatact ggagctggga catctgattt 3001 cccataccca agaagaccaa ggaaatggga aaatagttcg gaatggttca atttacctat 3061 ggctaatgca agacaagcct ccgtatttat catgccacaa gactttgaca ccaaagtatt 3121 cgagcgatgg gaaagttctg tcctcctaca tatgacagac aaaatcttcg atgatcccca 3181 agacaagctt acatacattg agaatttact aggggaatcg gaaaagaaga tgttcatcac 3241 ttggaggatg aagttcacta ctgaatatga agaaatgcgt gcaaacgcat taggctccaa 3301 cggaacacaa aatatcctga accagatcag gatgatattc tttttggaaa atcctcaagt 3361 cggcaccacc aatagccagg atgccgcgta caagacatta aagcagctgg tatgcacaga 3421 aatgtcggga ccagcaatat acagatacct caatgactac ttccatctat cagcaaaatc 3481 cggaagagct tgggcaagtg aagaactctc aaaagaattc tttacgaaac tcccaaaggg 3541 attgggagac agagttgaga aaagctttaa agaaaaatac ccaaacaata caattggggt 3601 agcagcaaga atcactttta ccagagccta tatgaaagag atatgccaag aagcagtgtt 3661 ccagagccaa ctcaagagat tggatttctg caagggaaca ccagtccatg ggctatacgg 3721 caaggataaa tcctacggaa gaagatatgg ggtacgaaag agcacctcgt acaaaggaaa 3781 accccataag tcacatgtga gaatcgacaa aaagaagcat ctcacaatga agaggaagga 3841 ctgcaagtgc tttgcttgcg gtgatatcgg tcatttcgca tcagaatgca cgaatcccaa 3901 gaagctgatg cacagagttc agatcctaca atcacttgag ctagaggacg gtattgatgt 3961 catctcagta gggtttgatg aatctgacgt ctcagacata tattcagtat ctgaagggga 4021 agataactac cagttcaaac atgaagattt cggagtagtt gaccatgacg tctttatgat 4081 gactattgag gaaagaaacc acctagtccc tacaacatca ggatggcgtg cagccatgaa 4141 agtcacaaag gaagaatatc tatgcctaca ccaatgggag tttagctcag aaagggcagg 4201 atactgtaga gcctgcaagc accaggcctt gaaaggtagc agggcagatt gttcaacctg 4261 caagattact atctgctcat tgtgcaagcc ccactattac aaagatgcag cgcctattcc 4321 agtccaaaag aaggtcgtaa aggatgattg gatgaacatg gcaaagagat tcatggacag 4381 ctggaaaaag gctgaagatg aaaaaatgga actgaaggaa gaactcaatg acatcaagga 4441 gcaaatcaag ttctacaaag gcaaagaaaa agaggtatgc actgaagaaa tccctcagat 4501 ttatactcaa aaattagaac tccttgagaa tgaaaatagc ttgctcaaag acctggagga 4561 agaaagaaag atacaggata tacaggtttt caaagagatc caagctatga ggaaagagat 4621 tgagagcctt aaggcagcaa aggaagaaga aaataaggct catgaggagg aaaagaaggc 4681 tcttaaggaa gagattttag ccttaaagaa aagcatcact gaaattcaga agccagtgga 4741 actagtgaac aacgtggagg aacatctggt tctgacagga aagcaaagaa ataatctcct 4801 caacatcaaa attacaatag agataaaaga aaagaagatc accatgaatg cgatcttaga 4861 cacaggagct gccatatgtg tctgtgatgg tcagatagtt gacaactact tcaggagacc 4921 atcaatgatg aacgccttca taaagggagt aaatgggatc accaacgtac aagaaatcct 4981 agaggaagga agaatctgga ttggcaatca atggttcagg atccccagaa catacgttat 5041 gccacaactc tctgaaggac ttcactttat catagggatg aacttcattc gtgcaatgga 5101 aggaggaatt cgtattgaac aagggatagt aaccttctac aaaatgatta ctcaagctca 5161 ggcaccccct atcactcatg acatctctta cattgaagaa ttggaattag agctgccact 5221 ctactatgac atctgtgcag ccaaccccat aggagggatg tttaacagtg acttgatatc 5281 accagctgag atccagaagc tcaaagacct cggatatatc ggggaagaac ccctgaagca 5341 ttgggctaaa aatcaagtca gatgtagaat agaggtcaaa aaccctgacc tcatcatcga 5401 ggacagacct ctgaaacatg tcacccctgc tatgaaggaa tcaatgaaga ggcacgtgga 5461 caaactactc gagctgaaag taattcgacc ctcagaaagt aaacatagaa ccactgcaat 5521 cattgttcag tcgggtacgg agatagaccc tcttacagga aaagagaaaa gagggaagga 5581 gaggctggta ttcaactaca agcgcctcaa tgataacacg gagaaagacc aatactcatt 5641 accaggtatc aacaccatca ttagtaggat tggcaattct aaaatctata gcaaatttga 5701 tcttaaatca ggatttcacc aagtcgccat ggaccctgaa agtatacctt ggacggcgtt 5761 ctgggctata gacggactgt acgagtggct tgttatgcca tttggtttaa agaatgcacc 5821 tgccatcttc cagagaaaga tggataattg cttcagagga accgaggaat tcattgcagt 5881 ctacatagac gatatactca ttttttctga taacatttct gatcatagga agcatcttaa 5941 gaagttcctg gaaatttgca aagcaaatgg gcttgttctc agcccaacaa aaatgaagat 6001 tggcacaccg gaaattgact tccttggagc aaccattggt aactccaaaa tcaaattaca 6061 gccccacatc atcaagaagg tcattgaaac aagagatgag gagctgaaag aagttaaagg 6121 attaaggaaa tggttgggag tccttaatta tgccagggca tacatcccta acctcgggaa 6181 aacattggga ccgctctatt caaaaacttc tggcaacgga gagagaagaa tgaatagtca 6241 agattggaag attgtacaaa acatcaaaac tcaggtacaa agacttcccg atctagaaat 6301 ccctcccacc agtgcaataa tgatacttga aacagacggt tgcatggaag ggtggggagg 6361 aatttgcaaa tggaaggcaa agccatcaga tacaaggctg aatgaaaaaa tctgtgccta 6421 cgccagcggc agttacaatc cgatcaagag tacaattgac gctgaagtcc acgccgtaat 6481 aaacagctta gaaaaattca aaatatacta cctggataag aaagagctga tcatcagaac 6541 ggatagccag gctattgtgg cattctacaa gaagcaagct gatcacaaac catcgaggac 6601 aaggtggtta atgcttatag attacatcac aggccttggt atcaacgtaa agtttgagca 6661 cattgatgga aaggaaaatg tgcttgctga cacattgtca agattggtac aagtattagt 6721 taccaaaatt caccatccag ctgaggaaca attggtggat gcagttctcg aagtcctcaa 6781 aaatccaaag gaagtggcca tcaagaaggt aaaccatttt atcttactaa ctgaaagatg 6841 gattgcagga ttcaaggacg aacatcctgt gaacgttctg actcttgacg aagaaacaag 6901 gctacgatgc tcatgccaag atcccatcac aaaacaaggg atgtttgctg cccttctgca 6961 aagtcacact gctacaaatc caggacgatg gttctacaaa tgtgagcgaa acagatgtca 7021 cctctggata tggaaggacc tcttggacca gtatgccaac gaatactaca tcaacatggg 7081 cctcaactct ttactgctca acatggattg gcctgatgaa gagtcagatc cactggatcc 7141 tccaagccca gctagaaccg aagatatttt tgacttggca aacgtaagca atgacgacta 7201 aacaagattc ggtgcggaaa tggtggaccc ataatggtac aaatctaggt gcaaatcaga 7261 gtcatgcaca tagctttatt tcctttaaaa atggattgag ccccggggag ccgtccgatt 7321 gtttgataaa aatgtctggg tgcaatgctt tgtcatgcac atgactactt aaaggttgtc 7381 ggtcggtgcc tgcgtgcatc tcaagcaacc agtacgctag aaagaaaagt ctgggtgcaa 7441 tgcgctgtca tgcacatgac tactctagct ttattaaagt ttgtcggttg cattattggt 7501 gcctgcgtgc atcactactc tagctttatt aaagtttgtc ggttgcatta ttggtgcctg 7561 cgtgcatccg aagcaacctt tgcctttctc tatctataag agaaggcctt gtaactcagt 7621 tgcaagcatg caattcccac gcaagcttac ttctgaattc tccagaaatc aaagtcaata 7681 gaatcctttt cttacagatg ttcttgaaat ctctatgagc aatcattaga cgagtaaaga 7741 acaagatccg caaagccccc cccctata //