LOCUS KJ013506 7393 bp DNA circular VRL 13-NOV-2014 DEFINITION Banana streak OL virus, complete genome. ACCESSION KJ013506 VERSION KJ013506.1 KEYWORDS . SOURCE Banana streak OL virus ORGANISM Banana streak OL virus Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus. REFERENCE 1 (bases 1 to 7393) AUTHORS Rajeswaran,R., Seguin,J., Chabannes,M., Duroy,P.O., Laboureau,N., Farinelli,L., Iskra-Caruana,M.L. and Pooggin,M.M. TITLE Evasion of short interfering RNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses JOURNAL J. Virol. 88 (19), 11516-11528 (2014) PUBMED 25056897 REFERENCE 2 (bases 1 to 7393) AUTHORS Rajeswaran,R., Seguin,J., Chabannes,M., Duroy,P.-O., Laboureau,N., Farinelli,L., Iskra-Caruana,M.-L. and Pooggin,M.M. TITLE Direct Submission JOURNAL Submitted (31-DEC-2013) Department of Environmental Sciences, Botany, University of Basel, Hebelstrasse 1, Basel, BaselStadt 4056, Switzerland COMMENT ##Assembly-Data-START## Assembly Method :: Velvet v. 1.2.07; Oases v. 0.2.08; Seqman module of Lasergene DNASTAR v. 8.1.2 Assembly Name :: BSOLV-[MP] Coverage :: 200x Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7393 /mol_type="genomic DNA" /country="France: Montpellier" /collection_date="Nov-2010" /host="Musa acuminata cv. Cavendish, inoculated with BSOLV 15 years ago using mealybugs and then propagated vegetatively in a greenhouse" /db_xref="taxon:328671" /isolate="MP" /organism="Banana streak OL virus" CDS 521..1054 /codon_start=1 /protein_id="AHM92946.1" /translation="MVEKTWDQKFQEFLNSSELTQAQLEYLDLATEAKVSNKDLAHNL HINTYRLSLTGKVLWTSGRKNRDLLVQIIGEQEAQKKDLLELQNLSKIVRSQRNDLKK AHEKLDVLSDELKALRKDYLKRRPLSKEDVEELVLRISEQPKFIEKQTEALTEELTKE VQNLKKIIHDFERKLMG" /product="hypothetical protein" /note="small protein of unknown function; ORFI" CDS 1051..1455 /codon_start=1 /protein_id="AHM92947.1" /translation="MSNSITSSAVYQQAIAGTTGDWESPGVGISDRGSVNNTQLTRQL NTIIFLCTKTQQEVLALKDTVADIQNCLRILERTGATSAGTPQLKGEIDAINEKLSRI QQIQGSQPRKDGGTAATSKVFQDPYKLLRNLK" /product="hypothetical protein" /note="small protein of unknown function; ORFII" CDS 1455..6953 /codon_start=1 /protein_id="AHM92948.1" /translation="MAQRPRITGSRTTTAEEGIPLIDDQIREYRSSRRAAYEAQRIAR QTGNIIGRVVGRQPREHTLSMVVDPNSELSRSLAHRARTVPGEVLYMTQRDSPVNRIY RNRTEERMLVTNGQQDRSFIYQESFEELASAGFEYIHLGVLQVRIQIMHRTYAGTMAL IVFRDTRWTQEGEEDRSIIGAMEADLSQGHQLIYVIPDIMMTIRDFYQHVQISIITKG YQGFQGEANLLITRSCRCRLTNVPNVGFAYNIQRVVEYLNSKGVKAIQAQKLSTTKYQ GTEWNIKPSNVVVPMQPTNMITRVNYDNSRSIRFGNYQASTSSAPPKYNEDGDSDDDI QATIEHVNMLYIEDTSDTDYPVMAAEEEIFPLENMVGEDDIISQFLENLDITDDEEDS RSQYVMNLEDNEEFPQLREIEKVLSSVAETAISSYRPPDAEMGGEAPAYAPATSATGW AGSRPFPFMPKGGPRRWDSNNEFYSLPPAQSRQGAMFVMPMDFDIKVFERWESITLLH MTEKIFDNADDKMRYMENLLGEDEKKHFIEWRMKYTAEYETMKAQALGDQGTQNIINQ IRLIFFLENPQVGTTTSQDAAYKTLKSLVCTEMTDTAIYRYMNDYFHLSAKTGRAWAS EELSKEFFTKLPRGLGDEVEKAFMEKHPSNTVGITARITFTKRYLKELCEKVALQKSI GKMDFCRSTPVHGLYRDKSYRKYGARKSTSYKGKPHKSHVRIGKKKYLSLRKKNCRCY ACGEEGHFASECKNPRKIMDRVKVLDSLDLEDGLDVISVGFDEDDVSDIYSIDEEADN YRFTNEEMEDFKNYEVYMLRVEEMDEPREYLVGEPSEWRSKMKVSRRQYFCKHEWKFE ETHVTICKACGSEAAPKHRIDCLKCEMTVCLMCQPWFYKNVNTEEVKKTRVRIERVID WKDIALKQHEVLKTSIANEKQLSEEVEILRKQNKELKEKEPIIFEEDTEETAQLIQKL EDVERENELLNILIKQKEKDEIQYLNEIIELKERIKDLEQQQKDKEEQVNVLEEVSIN ALRPRNNHLNIKCEIEVKDKKVVLNAILDTGATVCVADERMIPSGMKEQAKNKIIIRG VNGVTEVNEVTSAGKLWVGKQWFYLPQTFIMPSLADGVHMIIGMNFIRTVGLRIENGE VTIYKIMTTVQAPPIVHELNYIDELELELHEYYNICAAESSRGEISEEFISPDIIGKM KKLGYIGEEPLKHWEKNQVKCRIEVKNPDMIIEDRPLKHVTPTMKETMTKHVQKLLEL KVIRPSSSKHRTTAMIVESGTEVDPMTGKERRGKERLVFNYKRLNDNTEKDQYSLPGI NTIIKRIGNAKIYSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPA IFQRKMDNCFRGTEDFIAVYIDDILVFSETIHQHKEHLKKFMTICEKNGLVLSPTKMK IGTRQIDFLGATIGNSKIKLQPHIIKKIIEMKDEELKEVKGLRKWLGILNYARSYIPK LGKILGPLYAKTSPNGERRMNTQDWKIVKEVKEVVANLPELELPPEKAIMIIETDGCM EGWGGVCKWKTDSLQPRWSEKICAYASGKFTPIKSTIDAEIQAVINSLDKFKIYYLDK KELIIRTDSQAIVSFYKKSSDHKPSRVRWLAFTDYITGTGLEIKFEHIDGKDNVLADT LSRLVKIILHPEKHQSEGVLINAVEEVFHKGNTDAKQRVNDVVKRYEDWLSKGYRLHQ INVLTLSEEPVFKCGCNKPAKLKISRTSRNPDREFYSCETNTCFTWVWKDQIDSFVQE KIRWEKKLEEISEDSLWEELLREQENLRAEQEYLIEDALDLLDISNDD" /product="polyprotein" /note="contains viral coat protein and proteins with homology to an aspartic protease, reverse transcriptase and RNase H" ORIGIN 1 tggtatcaga gcaaggttcg tttttatggc tttcatgggg taattccttt agataggagc 61 cgaagggctc tgcttttctc taattgagtt acaagtttat gatttaaatt gtttaaattg 121 gagctgtatt cagtctttct tagaaaaatg agcatgattt cgattatagc tggtcaaggc 181 tgtagggaaa aatgattatg ttttatgcta gttggtccaa gagagcatgc ctacccaaga 241 aaaagtaccc gaagagaatg gggaaaaaat tggttcttcg catgtatgag gataatatcc 301 tagaaacaga acataaactg cgtgaagtac ttacaaagcc aagataatat cctatataga 361 aacatgggca tcgtgaagta taagactgac tgaactacaa gctcctttat aaacaaaaag 421 atcatagacc tctgtaggta cgtcaatacg ggttaagcat cctggaggag tactcctatc 481 tagtttacga aaagaaagtc attcaccttg catacaattt atggtcgaga aaacttggga 541 tcaaaaattc caggaatttc taaactcatc tgaactcact caagctcaac ttgagtatct 601 tgacttggca acggaagcca aagtctcaaa caaagatctt gctcataatt tgcacatcaa 661 cacttatcga ctaagcctta cagggaaggt cctttggact tctggaagga aaaatcggga 721 tttacttgtg cagataatcg gtgagcagga ggctcaaaag aaggacttat tagagttgca 781 gaacttaagt aagattgtgc gcagccagcg taacgatctt aagaaggctc acgaaaagct 841 ggacgtcttg tctgatgagc ttaaagctct cagaaaggac tatctgaaga ggcgcccctt 901 gagcaaagaa gacgttgagg aattagtttt gcgtatctct gaacaaccta agttcataga 961 gaagcaaact gaggccttaa ctgaggagct gactaaagaa gttcaaaatc tgaaaaaaat 1021 tattcatgac tttgagcgaa agctcatggg atgagtaatt ctatcacaag ctctgcagta 1081 taccaacaag caattgctgg aacaactggt gactgggaat cccctggagt agggatatct 1141 gaccgtggat cggtgaacaa cacccagctc acaagacaac tcaacaccat tatattcctg 1201 tgtacaaaga cacaacagga agtcttagcc ttaaaagaca cagtagcgga catccaaaac 1261 tgcttgagaa tacttgaaag gaccggtgca acatcagccg gtaccccaca acttaagggt 1321 gaaattgacg ccatcaacga gaagttatca agaattcaac aaattcaagg gagtcaacca 1381 aggaaagacg gtggtactgc ggccactagc aaagtatttc aagaccccta caaacttctc 1441 agaaatttga agtaatggct caaagaccca gaattaccgg atcaagaacc accactgctg 1501 aagaagggat acccttaatt gacgaccaaa taagggaata tagaagctcc agaagagcag 1561 catatgaagc ccaacgaatt gccaggcaga ccggcaatat tattggaagg gttgtaggac 1621 gacaaccccg ggagcataca ctatctatgg tggtagaccc gaattcggag ctcagcagaa 1681 gtcttgccca cagagcaaga acagtaccag gagaggtact atatatgact caacgagaca 1741 gtcctgtaaa tagaatttac agaaacagga cagaagaaag gatgctcgta accaacgggc 1801 aacaagatag atctttcata tatcaagaat catttgagga gctagcctca gcaggatttg 1861 agtacatcca tctgggtgta ttacaagtca ggatccagat tatgcatagg acatatgcag 1921 gcacgatggc cttaatagtc tttcgtgata cacgatggac tcaggaagga gaagaagaca 1981 gatccattat tggagctatg gaggctgatc tgtcacaagg ccaccaacta atctacgtca 2041 tcccggatat aatgatgacc ataagggatt tctaccaaca tgtacaaatc agtatcataa 2101 ctaagggata ccagggattc caaggtgaag caaatctgct gattaccagg agctgtagat 2161 gcagactcac caatgttccc aacgtcggat tcgcctataa tattcaaaga gtagtggagt 2221 acttaaactc caaaggcgtt aaagctatac aagctcagaa gctgagtaca acaaagtatc 2281 agggcactga atggaacatc aagccctcca atgtggttgt accaatgcaa ccaacgaata 2341 tgatcaccag agtcaactac gacaactcac ggagtatacg atttggtaat tatcaagcaa 2401 gcacatcctc agcgccacca aaatacaacg aagatggaga ttcagatgat gacatccaag 2461 ccacaataga gcatgttaac atgctttata ttgaagatac atctgatact gactatccag 2521 tcatggcagc tgaagaggaa atctttcctc ttgaaaacat ggtgggagaa gatgacatta 2581 tctcccaatt tttggaaaat ttggatatca cggatgatga ggaagattcc agatcacaat 2641 acgtgatgaa tctggaagac aatgaagaat tcccacaact cagggaaatt gaaaaagtct 2701 tatcctcagt agctgaaaca gcaatcagtt catatagacc accagatgct gaaatgggtg 2761 gagaagcacc cgcatatgca ccagctacaa gtgcaacagg atgggctgga tcaaggcctt 2821 tcccctttat gcccaaagga ggaccaagga ggtgggattc caacaatgaa ttttattcat 2881 tacctccagc acaaagtcgg caaggagcca tgttcgtcat gccaatggac tttgacatca 2941 aagtattcga aaggtgggag agcattaccc tcctacacat gacggaaaag atttttgata 3001 atgctgacga caaaatgaga tacatggaga accttctcgg agaagacgag aagaagcact 3061 tcattgagtg gaggatgaag tatacagcag aatatgagac aatgaaagct caagcactcg 3121 gagaccaagg tacacaaaat atcatcaatc aaattcgatt gatattcttt ttggaaaatc 3181 cgcaagtagg aactactact tcacaagatg cggcctataa aaccttgaag agcctggtct 3241 gcacagagat gacagacaca gcaatctaca gatacatgaa tgattatttc catctgtcag 3301 ccaaaacagg aagagcatgg gcctcagaag aattatccaa ggaattcttt accaaactac 3361 caagaggtct aggagatgag gttgaaaagg cattcatgga aaaacaccca agtaacacag 3421 tagggatcac cgcaaggatc acctttacca aaagatacct aaaggaactg tgtgaaaagg 3481 tagcactaca aaaaagtatt ggcaaaatgg atttctgcag aagcacgcca gtacatggtt 3541 tatacagaga caagtcatac agaaagtatg gagctagaaa aagtacatcc tacaagggaa 3601 agccccataa atcccatgtt aggattggta agaagaaata tttatccttg agaaagaaaa 3661 attgcaggtg ttatgcctgt ggagaagagg gacatttcgc ctctgaatgc aagaatccaa 3721 gaaagatcat ggatagagtc aaggttctgg actctctaga cttggaagat ggattagacg 3781 ttatctcagt cggctttgat gaagatgacg tatcagacat ctattcaata gatgaagaag 3841 ctgataacta caggttcaca aatgaagaaa tggaagactt caagaactac gaagtctata 3901 tgttaagagt ggaagagatg gatgagccaa gggaatatct cgtaggagaa ccatctgaat 3961 ggagatctaa gatgaaagtc tccagaagac agtatttctg caagcatgag tggaaatttg 4021 aagagactca tgtgactatc tgcaaggcat gcggatctga agcagctcct aagcatagga 4081 ttgactgctt gaaatgtgag atgactgttt gtctcatgtg ccaaccctgg ttctataaaa 4141 acgtcaacac tgaagaagtt aagaaaacca gagttcggat agaaagggta attgattgga 4201 aggatattgc actaaaacaa cacgaagttc tcaagaccag cattgcaaat gagaaacaac 4261 tctcagagga agtagaaatc ttgaggaaac aaaacaaaga gctgaaggaa aaagaaccaa 4321 tcatctttga agaagacacg gaggaaacag ctcaactgat acagaagcta gaagacgtgg 4381 aaagagaaaa tgagcttcta aatatcctta tcaagcagaa ggaaaaggat gaaatccaat 4441 acctcaatga gattatagag ctcaaggaaa gaataaaaga tttagaacag caacagaagg 4501 acaaggaaga acaagtaaat gtccttgaag aagtctcgat taacgctctg aggccaagga 4561 acaaccatct caatatcaaa tgtgagatag aagtcaaaga caagaaggta gtcctgaacg 4621 caattcttga cactggagct acagtctgtg tagcagatga gaggatgata ccttcaggaa 4681 tgaaagagca ggccaaaaat aaaatcatta ttcgaggagt caacggagtc actgaagtaa 4741 acgaggtgac atcagcggga aagctatggg ttggtaagca atggttctac ctccctcaaa 4801 cttttattat gccttcatta gctgatggag ttcatatgat cataggcatg aattttatta 4861 gaactgttgg cctaaggata gaaaatggtg aggtcacaat ttataagatc atgacaacag 4921 tacaagcccc accaatagtt catgagctga attatattga tgaactagaa ctggaacttc 4981 atgaatacta taacatatgt gcagctgaga gttctagagg ggaaatttct gaagaattta 5041 tatctcctga cattattgga aaaatgaaaa aattgggata tattggagaa gaacctctca 5101 aacattggga gaaaaatcag gtgaaatgta ggattgaagt aaaaaaccct gatatgatta 5161 ttgaagatag gccattaaaa catgttaccc ctacaatgaa agaaaccatg actaagcatg 5221 tccagaagct tttagaactt aaagtgatca ggccttcaag ctcaaaacat agaacaacgg 5281 caatgatagt agaatctggg acagaggttg acccaatgac tggaaaggaa agaagaggaa 5341 aggagagatt ggtgtttaac tataagaggc tgaatgataa cactgaaaaa gaccagtaca 5401 gtttgcctgg aattaacact attattaaga gaattggaaa tgccaagatc tatagcaagt 5461 ttgatttaaa gagtgggttt catcaagtag caatggaccc agagtctatt ccctggacgg 5521 cattttgggc tatagatggg ctgtatgagt ggctagttat gccctttgga cttaaaaatg 5581 ctcctgccat atttcaacga aaaatggaca attgctttag agggacagag gattttattg 5641 cggtatacat tgatgacata ctagtattct ctgaaacaat acaccaacat aaagagcatt 5701 tgaagaaatt tatgacaatc tgcgagaaaa atggtttagt cttaagtccg acaaaaatga 5761 aaattggaac aagacagatt gacttcctag gtgcaactat tggaaactca aaaattaagt 5821 tgcagcctca tattattaaa aagatcatcg aaatgaaaga tgaagaacta aaggaagtga 5881 aaggattaag gaaatggctg ggaatcctta attatgctag gagctacatt ccgaaactgg 5941 gaaaaatcct tggaccactg tatgccaaaa cgagtcctaa tggagaaaga agaatgaata 6001 ctcaggactg gaaaattgtc aaagaggtca aggaagttgt agctaatctg ccagaacttg 6061 agttaccccc cgaaaaagct atcatgataa ttgaaacgga tggctgtatg gaaggctggg 6121 gaggggtatg taagtggaaa actgatagtc tgcagccaag atggtcagaa aagatctgtg 6181 cttatgcgag cgggaaattc actcccatca aaagcacaat tgacgcagag atacaggctg 6241 taataaacag tttagacaag ttcaagatat attatcttga taagaaagag ctcataatca 6301 gaactgacag tcaagcaata gtgagctttt acaagaaaag cagtgatcat aaaccatcaa 6361 gagtcagatg gcttgccttc acagattaca ttaccgggac aggtcttgag attaagtttg 6421 aacacattga cggaaaggac aacgttttag cagacactct gtcaagactg gtaaagatta 6481 ttctccatcc ggaaaagcat caatctgaag gtgtgttgat caatgcagtg gaggaggtat 6541 ttcacaaggg aaacaccgat gcaaaacaga gagttaatga tgttgtaaaa agatatgaag 6601 actggttgag caaaggctac aggttgcatc aaatcaatgt actaacacta agtgaagagc 6661 cggttttcaa atgtggatgc aataaaccag caaaactgaa gatctccaga acatccagaa 6721 atcctgacag ggagttttac tcctgtgaaa ctaacacttg ttttacttgg gtctggaaag 6781 accaaattga ctcgtttgtg caggaaaaga tcagatggga gaagaaactt gaagaaatat 6841 cagaagactc actgtgggag gaattactga gggagcaaga aaatctgcgt gcagaacaag 6901 aatatcttat tgaagatgct ctagatctgc tggatatcag taatgatgac tgaagcggaa 6961 gtggcggacc cctaccacgt gttgatacca accggtgtga agactgataa gatgcggagt 7021 gagctggata ccactcactt tatgtaaaga ggagacaaag tataatgtct ctttatttta 7081 agtttgtcgg tgtgcgttgt ctagtcacgc acgatgacct ttagtaactt tgcaggattc 7141 ttacgcaaag ttgttaggcc agagacatgt gatgatgctt atctgcatta ttggtggatg 7201 ccacctaacg atgctagaaa gctccacaac tctctatata aggagccttg tattcaggtt 7261 gcaaacacgc accacaacgc gagtttactc ctgatttgag aaataaaaac ttctgtgctt 7321 gaaacacact ttgtgcgagt tcactttgtg cgagtagagc gcaagatcct agttccgcga 7381 gcgtagacct atc //