LOCUS KJ013510 7797 bp DNA circular VRL 13-NOV-2014 DEFINITION Banana streak VN virus, complete genome. ACCESSION KJ013510 VERSION KJ013510.1 KEYWORDS . SOURCE Banana streak VN virus ORGANISM Banana streak VN virus Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus. REFERENCE 1 (bases 1 to 7797) AUTHORS Rajeswaran,R., Seguin,J., Chabannes,M., Duroy,P.O., Laboureau,N., Farinelli,L., Iskra-Caruana,M.L. and Pooggin,M.M. TITLE Evasion of short interfering RNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses JOURNAL J. Virol. 88 (19), 11516-11528 (2014) PUBMED 25056897 REFERENCE 2 (bases 1 to 7797) AUTHORS Rajeswaran,R., Seguin,J., Chabannes,M., Duroy,P.-O., Laboureau,N., Farinelli,L., Iskra-Caruana,M.-L. and Pooggin,M.M. TITLE Direct Submission JOURNAL Submitted (31-DEC-2013) Department of Environmental Sciences, Botany, University of Basel, Hebelstrasse 1, Basel, BaselStadt 4056, Switzerland COMMENT ##Assembly-Data-START## Assembly Method :: Velvet v. 1.2.07; Oases v. 0.2.08; Seqman module of Lasergene DNASTAR v. 8.1.2 Assembly Name :: BSVNV-[MP] Coverage :: 30x Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7797 /mol_type="genomic DNA" /country="France: Montpellier" /collection_date="Nov-2010" /host="Musa acuminata cv. Cavendish, inoculated with BSVNV 15 years ago using mealybugs and then propagated vegetatively in a greenhouse" /db_xref="taxon:1411991" /isolate="MP" /organism="Banana streak VN virus" CDS 754..1284 /codon_start=1 /protein_id="AHM92958.1" /translation="MDSYWDLEFEKYKNSHSKSVSDLSYLDLASADKVSNKDLAFNLH INTYRSDLGFKVAIHSLSKNRELLIQNRKLLEEQKQQLSEINNLSKVVRLQRADLKET LRRQDVLAKELQALRKDYLERRPLSKEDVEELVVRISEQPKFIEKQTEALTEELTKEV QALKLIIHNFEQKLLG" /product="hypothetical protein" /note="small protein of unknown function; ORFI" CDS 1281..1679 /codon_start=1 /protein_id="AHM92959.1" /translation="MSLAGSKATAIYQEALQSTAAGWEDTGIGFTDKGVISTTTLSRQ LNSLLFLVIKQNQQITTISEELTQLHNRVKNLEGRTGVSASPLYKSEIESINAKLKSI QDIQGSHPPKETPSGVIKVFEDPYSILRRL" /product="hypothetical protein" /note="small protein of unknown function; ORFII" CDS 1680..7373 /codon_start=1 /protein_id="AHM92960.1" /translation="MASRPRVSGSTTRTMVAEPGVPLVDDQIREYRSAARVAYEAQRI ARRTGNILGRIVGRQPREHTLAMIVDPNSELERSLAHRARTIPAEVLYMTQRGEPTNR VYRNRTEERMLVTHGQQDRTFILPESYEELREAGFEYIHLGVLQVRIQIMHRTYAGTM ALVVFRDTRWTQENHQDRSIIATMEADLSQGHQLIYVIPDIMMTIRDFYQHIQISILT KGYEGFQGEANLLITRSCRCRLSNVPNVGFQYNIQNVVEFLKSRGVKALNATKLSTRR FQGGEWNIRPSEVVVPMQPTTMIVRVNYDSSRSIRFGDYEASTSSSAPRYEQDGDEDE ALGDIHQVNMITIIEDDAEDDYPRLSALERIIAPESMVGEEDTIAEFLSNLSLDSSTD EEFYDADNSLFEEEEYDGDSEVSTPRSKYNIFALEDEYPKLQQLESLVLSTTESAISR FRPADTDMTGVGPGYAPATGTAGYTGASSSDFPYPRRPRKWDNNSEWFNLPTANARQA SIFVMPQDFDTKVFERWESSVLLHMSDKVFDDPQDKLTYVENLLGESEKKMFITWRMM FTAEYEEMKNNALGSNGTQNILNQIRMIFFLENPQVGTTNTQDAAYKTLKQLVCTEMS GPAIYRYLNDYFHLAAKSGRAWASDELSKEFFTKLPRGLGDRVEKKFKEKYPNNTIGV APRITFTRNYIKEICQEAVFQSQLKRLDFCKGTPVHGLYGKEKAYGRKYGVRKSTSYK GKPHKSHVRIDKKKHLLMKRKDCKCFACGDIGHFASECPNPKKLMHRVQILQSLELDD GIDVISVGFDESDVSDIYSVSEGEDSYQFNNEDFDVIGHDVFMFTIEERNCLVETTSA WRSAMKVTPEEKNCLHTWSFEEKTTDHCRACKNLALRGSRADCTQCKIIICSLCKPYY FQDGSPIPAQSSTPSGYSYDDWMGSANRWKAHYEFSQARRKSLKADLERAEEELKFYK QKEKEKAKLKDQIPEAVQAKLDDLEKEKELNNILRIEAETELKALKESFKEKEEALKE EITALEEEVRIHKEEAEELQEENQKLKEKIIAFEKDVTQGPEEVIELVNNVEEHLVLT GQQKNNLLNIKITLEVKEKRITMNAILDTGAAICVCDGQMVNEYFRRPSMMNAFIKGV NGITNVKEILEEGKIWIGNQWFRIPRTYIMPQLSEGLHFIIGMNFIRAMEGGIRIEQG TVTFYKMVTQAQAPPMVHDISYLEELELELPIYYDICATNPSGGEINSDLISPSEIRK LKDLGYIGEEPLKHWAKNQVKCRIEIKNPDLIIEDRPLKHVTPAMKESMKKHVDKLLE LKVIRPSTSKHRTTAIIVQSGTEIDPLTGKEKRGKERLVFNYKRLNDNTEKDQYSLPG INTIISRIGKSKIYSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAP AIFQRKMDNCFRGTEEFIAVYIDDILIFSNNISDHRKHLSKFLEICKANGLVLSPTKM KIGAKEIDFLGATIGNSKIKLQPHIIKKIIETKDEELKETKGLRKWLGVLNYARAYIP NLGKTLGPLYSKTSINGEKKMNSQDWKVVQLIKNQVQNLPDLDIPPAEATMVLETDGC MEGWGGVCKWKLHPSDTRLAEKVCAYASGRYHPIKSTIDAEVHAVINSLEKFKIYYLD KKELIIRTDSQAIVAFYKKQADHKPSRTRWLMLIDYITGLGINVKFEHIDGKENVLAD TLSRLVQVLITKVHHPAETQLVEAVMEVISNPKKEALDKVNHFIFLTQQWITEHKEEH TVNTLLQLEEPQLHCGCRNYETGERRNAILLQSHTSANPNRWFYKCAENKCHIWIWKD ILDQYAEDYATYTRIGLEALNLEDWFEEPEPDPPNPVDRQRIEDILDLLNVSNDD" /product="polyprotein" /note="contains viral coat protein and proteins with homology to an aspartic protease, reverse transcriptase and RNase H" ORIGIN 1 tggtatcaga gcaaggtttt ctgtaagtaa tttatggctt tcatggggta aaacccttag 61 ataggagcct gagggctctg ctatgttcta ttttgagaaa ataactgtgt aagtagtaat 121 gcatgataaa tcgaataagt tctttacgga tggtcctaaa tttatgaaat cattctttta 181 ctatctgagt gagacccttg tgtttccaag ttctactgag aaatcatgag taaatggacg 241 ttgacacact gacttaagga aaagaaagat gtgcctagga tgaagtcgag cactgttcta 301 ggctgaaggg tgaaaagaaa aatgagttga gttgggagta agactctgag aggcttgagg 361 caaaagaacc ggaaccttac ctagcaaagt aagacccaag ggagggcagt agctggagaa 421 ccccggtgtg agtttcttta cctagcagaa gatatactct agtatcctca aaacaccgtg 481 aagtatttac aaccctttat gaacaagtat tttctggagt tagatgtcag ccaccaaaga 541 tcatgatcta tcacaaacaa acttgagtca tacagagaag aactcagatg taactgaatg 601 actaatgatc agggacctct attaaagagc ttagtaagaa gtaagtgcat aaactacctc 661 tggaactggt tataatcttg aaatgagcat atgtatccca aaggtaactc ctatctgtcc 721 gtgaccataa gaaaccttct ttaaagaaaa actctggatt cctactggga tcttgaattt 781 gaaaagtaca aaaactctca ttccaaatct gtttcagatc tttcttattt agacttagca 841 tctgctgata aggtctctaa taaagacctt gcatttaatt tacatataaa cacttatcgt 901 agtgatcttg gttttaaagt cgcaattcac tctttatcaa aaaatcgtga gctgctaata 961 cagaacagga agcttttgga agaacaaaag cagcagctgt ctgaaattaa caacctatct 1021 aaggttgtgc gtctccaacg agctgattta aaggagacct tgagaagaca ggacgtcctt 1081 gcgaaggagc ttcaggctct tcgtaaagac tatctggaaa ggcgccctct tagcaaggag 1141 gacgtggaag aattggttgt ccgcatctct gaacaaccaa aatttattga aaaacagacg 1201 gaagctctta ctgaggagct tacaaaggag gttcaggcac tgaagctaat catccataac 1261 ttcgaacaga agttactggg atgagcctgg ccggaagcaa ggccacagca atctatcaag 1321 aagccttaca atctactgct gctggttggg aagacaccgg catcggattt actgataaag 1381 gagttatcag taccactacc ctatcaaggc agctaaattc gctgttattt ctggtgatca 1441 aacaaaatca gcagatcacc accatctcgg aagaactaac ccaacttcac aaccgggtta 1501 aaaaccttga aggaaggaca ggggtatctg caagccccct gtataaatcg gagattgaat 1561 ccatcaacgc caagctcaaa agtattcaag atatacaagg gagtcaccct ccaaaagaga 1621 ccccctccgg agttatcaaa gtttttgagg atccctacag catcctccgc agactataaa 1681 tggcgtcaag acctagagtt tctgggagca ctaccagaac catggtagca gaaccagggg 1741 ttcccctggt ggatgatcag atccgggaat accggagtgc ggcccgagtc gcatacgaag 1801 cacaaaggat tgccagacgc actggcaata ttcttggaag aattgttgga cgacaaccaa 1861 gggagcatac ccttgcgatg atcgtggacc ccaacagtga gctggaacgc tcactggctc 1921 accgggcacg aacaatacct gctgaagtcc tttacatgac ccagcgcggt gagcctacaa 1981 atcgggtcta tcggaacaga actgaagaaa ggatgctagt gactcatggt cagcaagata 2041 ggactttcat cttgccagag tcatatgaag agctcaggga ggctggattt gagtacatcc 2101 atctaggggt actccaggtg cgcatccaaa ttatgcaccg aacatatgct ggtacgatgg 2161 cattagtggt cttccgtgac accagatgga cacaggagaa ccaccaagac agatccatta 2221 tagcaaccat ggaggctgat ctctcccaag ggcatcagct aatttacgtc atcccagata 2281 taatgatgac tattcgggat ttctaccagc acattcagat aagcatcctt accaaaggat 2341 atgaaggctt tcaaggagaa gcaaatctcc ttattacaag aagctgccgg tgcagattaa 2401 gcaacgttcc taacgttggc ttccaataca acatccagaa cgtcgtggaa ttcttaaaat 2461 ctaggggagt aaaagcccta aatgcgacga aattaagcac caggaggttc caaggaggag 2521 aatggaacat ccgaccatca gaagtggtgg tccctatgca gccaacaact atgatagtac 2581 gagttaatta tgactcgtca cgaagcatca gattcgggga ttatgaagct agcacatcat 2641 catcagcccc gagatatgag caagacggtg atgaagatga agcacttggt gatatccatc 2701 aagtaaatat gatcaccatc atagaagatg atgcagaaga tgactaccca cggttatcag 2761 ctttagagcg aataatcgct ccagaaagca tggtgggaga ggaggacaca attgctgaat 2821 ttttaagcaa tctgtcctta gattcctcca ctgatgagga attctacgac gccgacaact 2881 cattattcga agaagaagaa tatgatgggg attccgaagt tagcacccca aggagcaaat 2941 acaatatatt tgcgctagaa gatgagtacc caaaacttca acagctggaa agcctggtac 3001 tctccacaac agagtctgct atcagtcgct ttagaccagc agacacagat atgactggcg 3061 taggccctgg ctacgcacca gcaactggaa cagctggcta tactggagcc agttcatctg 3121 atttccctta ccctagaaga ccaagaaagt gggacaacaa ctcggagtgg ttcaacctac 3181 ccaccgctaa cgcgaggcaa gcatcaatat tcgttatgcc tcaggatttt gacacaaagg 3241 tctttgaaag atgggaaagt tctgttctcc ttcacatgtc tgacaaggtt tttgatgatc 3301 cacaagacaa gttaacttat gtggaaaacc tactaggaga atcagaaaag aagatgttta 3361 tcacttggag gatgatgttc acagctgagt acgaagaaat gaagaacaac gctctcggct 3421 caaatggaac tcaaaatatc ctgaaccaga tcaggatgat attctttctg gaaaatcccc 3481 aagttggaac caccaacact caagacgcag catacaagac actcaaacaa ctagtctgca 3541 cagagatgtc tggacctgcg atctacaggt acctaaatga ttacttccat ttagcggcaa 3601 aatctggaag agcgtgggca tctgatgagc tgtccaagga attctttaca aaactgccaa 3661 ggggattagg ggacagagtt gaaaagaaat tcaaagaaaa gtaccccaac aacactattg 3721 gagtagcccc cagaatcacc ttcacaagaa attatataaa ggaaatatgc caagaggctg 3781 tattccaaag ccaactgaaa aggctagatt tttgcaaagg gacacccgtc cacggcttat 3841 atggtaaaga gaaggcatat gggaggaaat acggagtcag gaaaagcact tcgtacaaag 3901 gaaagcctca caagtcacat gtgaggatag ataaaaagaa gcacctcctg atgaaacgaa 3961 aagactgcaa gtgttttgct tgcggagata tcggtcactt cgcatcagag tgtccgaatc 4021 ccaagaagct gatgcaccga gttcaaattc tacaatcctt agagcttgat gacggaatcg 4081 acgtaatctc cgtaggattt gatgagtcag atgtctcaga catctattcg gtatctgaag 4141 gcgaggacag ctaccagttc aacaatgagg attttgacgt tataggacat gacgtgttca 4201 tgttcaccat tgaagaaaga aactgcctgg tagaaaccac gtcagcctgg agaagtgcaa 4261 tgaaagttac tccagaagaa aagaattgct tacacacatg gagctttgag gaaaagacaa 4321 cagaccactg cagagcctgc aaaaatctgg ccctacgagg gagcagagct gactgcactc 4381 agtgtaagat aatcatttgc tctttatgca aaccatacta tttccaggat ggttcaccta 4441 tcccagcaca aagttcaacc ccatcaggat actcctacga tgattggatg ggatcagcaa 4501 ataggtggaa ggcacactat gagttctctc aggcaagaag gaagagcctg aaggcagacc 4561 ttgaaagagc ggaagaagaa ctaaaatttt ataagcaaaa ggaaaaggaa aaggccaaat 4621 taaaggatca aattccagaa gcagtacaag caaaactgga tgatctggaa aaagaaaaag 4681 agctcaataa catcctaaga atagaggctg agacagagct aaaagcatta aaggaaagct 4741 tcaaagaaaa ggaagaagcc ctgaaggaag aaatcacagc tctagaagaa gaagtgagga 4801 tacacaaaga ggaggctgaa gaacttcagg aagaaaatca gaaactcaaa gagaagatca 4861 tagccttcga aaaagacgta acacaaggac cagaagaagt gatcgaattg gtcaataacg 4921 tggaggagca cctggtacta acaggacaac agaagaacaa tctcctcaac atcaagataa 4981 ctctggaagt taaggaaaaa aggattacca tgaacgcgat actagacact ggagccgcaa 5041 tctgtgtctg tgatgggcaa atggtaaacg aatatttcag gagaccatcg atgatgaatg 5101 cgttcataaa gggagttaat gggattacca atgtcaaaga aatcttagag gaaggaaaaa 5161 tctggattgg taatcaatgg ttcagaatcc caaggacata catcatgccc cagctatcag 5221 aaggccttca tttcatcatc ggaatgaact ttatcagggc aatggaagga gggattcgaa 5281 ttgagcaagg aacggtaacc ttctacaaaa tggttacaca agcacaggca ccccctatgg 5341 tacacgatat ttcttacctt gaagaattag aattagaact gccgatttac tatgatatct 5401 gtgcaactaa cccctcagga ggagaaatca atagcgacct aatatccccc tcggagatcc 5461 ggaaactaaa ggacttaggc tacattgggg aagagccctt gaaacattgg gctaagaatc 5521 aagtcaagtg ccgaattgaa atcaagaacc ctgacttaat cattgaagat aggcccttga 5581 agcacgtcac cccagcaatg aaagaatcca tgaagaaaca tgtggacaag ctgctggaac 5641 ttaaggtaat caggccatcc acaagcaaac accggacgac tgcgataatt gttcaatccg 5701 gtacagaaat tgaccccctc actggaaaag agaaaagagg gaaagagagg cttgtattca 5761 attacaaacg cctcaacgac aatactgaaa aagaccagta ttcactacct ggcatcaata 5821 caattatcag caggatcggc aagtcaaaaa tttacagcaa atttgactta aaatccggat 5881 tccaccaggt agccatggat ccagaaagca tcccatggac ggccttttgg gccatagatg 5941 gactttatga atggctagtt atgccatttg gtctgaagaa tgcgcccgct atatttcaga 6001 gaaagatgga caactgcttc cgaggaacgg aggaattcat agcggtatat attgatgata 6061 ttttaatatt ctctaacaat atctctgatc acaggaaaca tctgtcaaaa ttcctggaga 6121 tctgcaaggc gaatgggctg gtattaagcc caacaaaaat gaagataggc gcaaaggaaa 6181 ttgatttcct aggagcaact attggaaact ccaagatcaa gcttcaacct catataatca 6241 agaagatcat cgagacaaag gacgaggagc taaaggaaac aaaggggctc agaaaatggt 6301 tgggagtcct taactatgca cgggcataca ttccaaattt aggaaaaaca ttaggcccgc 6361 tctactccaa gacgtcaatt aatggagaaa agaagatgaa cagccaagat tggaaggttg 6421 ttcaactgat caaaaatcag gtacaaaatt tacctgacct tgacataccc cctgcagagg 6481 caactatggt cttagagact gacgggtgta tggaaggatg ggggggagta tgcaaatgga 6541 agctccatcc ctctgacaca agactggcag aaaaggtctg tgcgtacgca agtggaaggt 6601 atcaccccat caagagcaca attgatgcag aggtacacgc agtgatcaac agcttagaaa 6661 aattcaaaat ttattatctg gataaaaagg agttgatcat aagaacagac agccaggcta 6721 ttgtggcttt ttataagaag caagctgatc ataagccctc aagaacaagg tggcttatgc 6781 taattgacta cattactggg ctcggaatca acgtcaaatt cgagcatatt gacgggaaag 6841 aaaatgttct agctgatact ctatcaaggc tggtccaagt gctgatcacc aaggttcatc 6901 atccagcaga aacccagcta gtcgaagccg tcatggaagt tataagcaat ccaaagaaag 6961 aagccttgga caaggtaaac cattttatct tcctaaccca acagtggatt acagaacaca 7021 aggaggagca cacggtgaac acgctactcc agttggaaga accacagctg cattgtggtt 7081 gtagaaacta tgaaacaggg gaaagaagga acgcgattct cctacaaagt cacacttcag 7141 ccaacccgaa cagatggttc tataagtgtg cagaaaacaa gtgccacatt tggatctgga 7201 aagacatcct ggaccaatat gctgaagatt atgctaccta caccaggata ggacttgaag 7261 cacttaacct tgaagattgg ttcgaagaac cagaacccga tccacctaac ccagtggacc 7321 gccagaggat agaggacatc ctggacctac tgaacgtcag caatgacgac tgaaagattc 7381 ccaggacacc ggcggaagtg gtggacccag tctaggtgcg atgcttagtc acgcacgatg 7441 actatgtcgg aaggcatctt tgctttcggc aaactttagt aatactttaa ggaaagtatt 7501 gtacaagtta ggtgcagaga caataatgca cccagcttta gctttgttta tggaattatt 7561 gtgtcggttg cattattgga tgcctgcgtg caccctaagc aatccccggc cctcttctct 7621 ataagaggag cccttgcaat cagttgcaag catgcaagtt tcccactgca agcttacttc 7681 tgagtttgag ttcaagttca ataaaaattc aagctttcct cttacattct gttcttgaaa 7741 ggttcgatct gatcgagcga gtagagaaca agatcttttg ggatttccgc cgttccg //