LOCUS NC_028117 5032 bp DNA circular VRL 30-OCT-2015 DEFINITION Bank vole polyomavirus isolate KS/14/281, complete genome. ACCESSION NC_028117 VERSION NC_028117.1 DBSOURCE BioProject accession PRJNA300243 KEYWORDS RefSeq. SOURCE Bank vole polyomavirus ORGANISM Bank vole polyomavirus Viruses; dsDNA viruses, no RNA stage; Polyomaviridae. REFERENCE 1 (bases 1 to 5032) AUTHORS Nainys,J., Timinskas,A., Schneider,J., Ulrich,R.G. and Gedvilaite,A. TITLE Identification of Two Novel Members of the Tentative Genus Wukipolyomavirus in Wild Rodents JOURNAL PLoS ONE 10 (10), E0140916 (2015) PUBMED 26474048 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5032) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-OCT-2015) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5032) AUTHORS Gedvilaite,A., Nainys,J., Ulrich,R. and Schneider,J. TITLE Direct Submission JOURNAL Submitted (07-MAY-2015) Eukaryote Genetic Engineering, Vilnius University Institute of Biotechnology, Graiciuno 8, Vilnius LT-02241, Lithuania COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KR612368. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5032 /mol_type="genomic DNA" /country="Germany" /isolation_source="blood serum and body fluids" /collection_date="15-Aug-2013" /host="Myodes glareolus" /db_xref="taxon:1737522" /isolate="KS/14/281" /organism="Bank vole polyomavirus" gene 57..1115 /locus_tag="AR664_gp1" /db_xref="GeneID:26101516" CDS 57..1115 /locus_tag="AR664_gp1" /db_xref="GeneID:26101516" /codon_start=1 /protein_id="YP_009174979.1" /translation="MGIILALPEFIGAAIAGGAEALEIAGSAGALIDGTAVTAAASIG TTAEVLGESLPVTISEAAATVLAQTPEVVEALNAGGQAVGSAVSLGSGLYQAISNTDP QSGTHGISDRVGMANALVPYQHVPTYIQWLRNILSYIPTIQQIWGGLERATQTYQYLD DQYRLREQQYERLVEQFERGVNSGPVAGVINRIRASALERELEIQRIAGDVRDVSANL RGGLAASGRAINNVASTLYNTVSGAASATRAAAGSVGGTVSNVVGHVQGTISSIQDYL RTIGSEASGVTTTMLTDGYNAMPRGISNFGSWIFMSGSDGGTPPLLFGLLGCVCFRRG LETSLFYTECAGREHLRR" /product="VP2" /note="capsid protein" gene 399..1115 /locus_tag="AR664_gp2" /db_xref="GeneID:26101512" CDS 399..1115 /locus_tag="AR664_gp2" /db_xref="GeneID:26101512" /codon_start=1 /protein_id="YP_009174980.1" /translation="MANALVPYQHVPTYIQWLRNILSYIPTIQQIWGGLERATQTYQY LDDQYRLREQQYERLVEQFERGVNSGPVAGVINRIRASALERELEIQRIAGDVRDVSA NLRGGLAASGRAINNVASTLYNTVSGAASATRAAAGSVGGTVSNVVGHVQGTISSIQD YLRTIGSEASGVTTTMLTDGYNAMPRGISNFGSWIFMSGSDGGTPPLLFGLLGCVCFR RGLETSLFYTECAGREHLRR" /product="VP3" /note="capsid protein" gene 1085..2146 /locus_tag="AR664_gp3" /db_xref="GeneID:26101513" CDS 1085..2146 /locus_tag="AR664_gp3" /db_xref="GeneID:26101513" /codon_start=1 /protein_id="YP_009174981.1" /translation="MRRSRAPSKMRTTPNIRLPRTIKKGGVEVLSVVPQSEDTELQVE MFMKPVFASDEGLKHWIIGGPLQRGEAPYNNELMCYSLGVIQTPEIPNSVDEQSIRVW EAYRVETEVIALPRSFSSGWEVTTKNIGGVGGPQLYFWAVGGQPLDVIGITPREEINF PSFTTAPGRHDHVSRQSSREKVTSQNFPIEAWAADPSRNENCKYFGRVIGGNLTPPVV TFSNSSTIPLLDEFGVGVLCIQNRCYLTSADMLGLTGEVEEQTLGPNAEFRRVIAAPG RFFRVHFRQRTIKNPYTMSLLYKQVFLNKEPEVTAQKEVEEVTLVDDNVKTGTLETAP ESALSVTNLNPTPQPLFNT" /product="VP1" /note="capsid protein" gene complement(2192..4574) /locus_tag="AR664_gp4" /db_xref="GeneID:26101514" CDS complement(join(2192..3687,3793..4003,4326..4574)) /locus_tag="AR664_gp4" /db_xref="GeneID:26101514" /codon_start=1 /protein_id="YP_009174982.1" /translation="MDRTLSRSEAKELMQLLDLDMCCWGNLPLMRKAYLNKCKEHHPD KGGNEELMKRLNSLYLQLEESVKRMQCLNEEDSMWSTTQVPTYGTQEWEEWWENFNRA WEEEQIRRDREEYSKKRKSDTSQPTASTSQNDSGYYHSQEQPDLTCHEEFEYCLNEFV SQAVFSNRTLTSFIVHTTKEKSELLYKKLLVKFKCNFASRHFNSDSGFVFLITPFKHR VSAVNNFCKTHCTVSFLTCKGVNNPYLCYSCMCRDPFRLVEESIIGGLKENDFKPADI YGDEKDELNWKIIADYAQAIHCEDPYLLMGMYSQFSANPEDCNHCKEAKVQEHYKYHE IHHHNAALFVFAKSQKSICQQACDTVTAARRVEIEHKTREELLLIRFRNKFIELNEAL QGETAIEMYMAGVAWYMCLFSDIDLKVYSFVETVTRNIPKKRYWCFKGPINSGKTTLA AALLDLLGGKSLNINVPADKLPFELGVAIDQYMVVFEDVKGQLSDNKLLPGGQGMNNL DNLRDHMDGSVKVNLEKKHINKRSQIFPPGIVTMNEYQVPPTIQTRFSKTIIFSQKPH LRKCLEAAPELVINRVLHKGITLLLLLIFNRPTCEFHPDIQSQVVYWKETIDKYVGLS DFALMQGKIMDGKSPFLDDSSDTEDNA" /product="large T antigen" gene complement(3927..4574) /locus_tag="AR664_gp5" /db_xref="GeneID:26101515" CDS complement(3927..4574) /locus_tag="AR664_gp5" /db_xref="GeneID:26101515" /codon_start=1 /protein_id="YP_009174983.1" /translation="MDRTLSRSEAKELMQLLDLDMCCWGNLPLMRKAYLNKCKEHHPD KGGNEELMKRLNSLYLQLEESVKRMQCLNEEDSMWSTTQVHQTQYACGDYYGINFMNR LCNAWDACLPHGLKHCNCISCYLKRNHAKRWKELRVPMTWIMCYCIDCYLDWFGFPLT YETFQWWGRILQWSKLCEVGLPGNFSICFLGSYIWYTRMGRVVGKLQQSLGRRTN" /product="small T antigen" ORIGIN 1 gcttgcctgt ttgttcaccc tgcaatttca cggtcccgcg cggctgctga tgaggtatgg 61 ggataatatt ggcacttcct gaattcatag gagctgctat agcaggggga gctgaagctt 121 tagagattgc agggtctgcg ggggctctga tagatggtac tgctgttact gcagctgctt 181 caattgggac aactgctgaa gttcttggtg aaagtctacc tgtaactatt tcagaggctg 241 ctgcgactgt actggcccag acaccggagg ttgtggaggc cttaaatgct ggaggccagg 301 cggtgggatc agctgtctcc ctgggaagtg gactttatca ggcaatttct aacacagatc 361 ctcaatcagg tactcacgga attagtgata gagttggaat ggcaaatgct ctagtgccct 421 accaacatgt tcctacttac attcaatggc tgagaaacat tttgtcttat attccaacaa 481 tacaacaaat atggggtgga cttgaaagag caacacaaac atatcaatac cttgatgacc 541 aatatagact gagagaacaa caatatgaaa gactggttga acagtttgaa agaggtgtga 601 acagtggtcc tgttgctggt gtgattaaca gaatacgagc ttctgctttg gaaagagaat 661 tggaaataca aagaattgct ggtgatgtaa gagatgtttc tgctaatttg agaggtggac 721 ttgctgcttc aggaagagca attaataatg ttgctagtac tttgtataac actgtgtcag 781 gtgctgctag tgctactagg gcagctgccg gatcagttgg tggtactgtt tctaatgttg 841 ttggacatgt gcaaggcact atatcttcta tacaggatta cctgagaacc attggtagtg 901 aggcctctgg tgttacaacc actatgttaa cagatggata caatgcaatg ccaagaggaa 961 ttagtaactt tggtagctgg atttttatgt ctggttctga tggaggaaca cccccattac 1021 tctttggatt actgggttgt gtttgcttta gaagaggcct tgaaacctct ttattctaca 1081 cagaatgcgc cggtcgagag caccttcgaa gatgaggacg acaccgaaca tacgcctacc 1141 aagaacaata aaaaaaggag gcgtagaagt tctgtcagtg gtccctcaaa gcgaagacac 1201 agagctgcaa gttgagatgt ttatgaaacc tgtgtttgcc agtgatgaag ggctgaaaca 1261 ctggattata gggggaccct tacagagagg agaggcaccc tataataatg agctgatgtg 1321 ctatagtttg ggtgttattc agaccccaga aattcccaac agtgtggatg aacagtccat 1381 tagagtgtgg gaggcctaca gggttgagac tgaagtcatt gctttgccca gaagctttag 1441 cagtggatgg gaagtaacca ccaaaaatat tggtggtgtt ggtggtccac agctctattt 1501 ctgggcagtg ggtgggcaac ccctggatgt aatagggatt acccctagag aggaaataaa 1561 ttttccctct ttcaccactg caccaggtag acatgaccat gtttcaaggc agtcaagtag 1621 agaaaaagtg acttcccaaa acttccctat tgaagcctgg gctgctgacc cttccagaaa 1681 tgaaaattgt aaatactttg gaagggttat tggaggtaat cttactccgc ctgtagtaac 1741 tttcagcaac agctccacca taccactcct ggatgagttt ggtgtagggg tcctgtgcat 1801 acaaaatagg tgctatctaa ctagtgcaga catgcttggt ctcactggtg aagttgagga 1861 acaaacactt ggccctaatg ctgagttcag gagagtcatt gctgctccag gaaggttctt 1921 tagagttcat tttaggcaaa gaaccataaa gaacccttat acaatgtctt tgctttataa 1981 gcaagtgttt ttaaataagg aacctgaggt cacagcccaa aaagaggtgg aggaggtgac 2041 tttggtggat gacaatgtga aaactggaac cctggaaact gccccagaaa gtgctttgtc 2101 tgtaacaaac ctaaacccaa cccctcagcc cttattcaac acataagcaa tgtttgtgtt 2161 ttttttttat tggtaaataa aggcaatata tttaagcatt atcttcagtg tcacttgaat 2221 catctaagaa ggggctttta ccatccatta ttttcccctg cataagagca aagtcagaca 2281 gtccaacata tttatcaata gtctctttcc agtaaactac ctgggattga atgtcaggat 2341 gaaattcaca ggtgggccta ttaaatatta gtagtagcaa caaagtaatt cccttatgta 2401 gcaccctatt aataactaac tctggggctg cttctaaaca tttccttagg tgaggctttt 2461 gtgaaaaaat aattgttttg ctaaaccttg tttgaatagt agggggtacc tggtattcat 2521 tcattgtaac tattcctgga ggaaatattt gtgacctttt atttatatgt ttcttctcta 2581 agttgacttt cacactgcca tccatatgat ccctcaaatt atccaaattg ttcattccct 2641 gtcctccagg caacagcttg ttatctgaaa gctggccctt aacatcctca aatacaacca 2701 tgtattgatc tattgcaaca cctaactcaa atggaagctt gtcagctgga acattgatat 2761 taagggactt tccccctaac aaatcaagaa gtgctgcagc aagagtagtt ttcccactat 2821 taatgggccc tttgaaacac cagtaccttt ttttaggtat gtttcttgtc actgtttcta 2881 caaaactata caccttcaag tcaatatcac taaataggca catataccag gcaacccctg 2941 ccatatacat ttctattgct gtctctccct gcaatgcctc atttaactct ataaatttat 3001 ttctaaatct tattaacaaa agttcttctc ttgtcttatg ctctatttcc acccttctag 3061 cagctgttac agtatcacag gcttgttggc aaatactttt ctgtgatttt gcaaaaacaa 3121 aaagagcagc attgtggtga tgaatttcat ggtacttgta gtgttcctgt actttagctt 3181 ctttacagtg gttgcagtcc tcaggattgg ctgaaaattg gctatacata cccatcagga 3241 ggtatgggtc ttcacaatga attgcttgag cataatctgc aattatcttc caatttagtt 3301 catctttttc atcaccatat atgtcagcag gcttaaaatc attttctttc aatcccccaa 3361 ttatactctc ctctactaac ctaaagggat ctctgcacat acatgaataa caaagatatg 3421 gattatttac acctttacat gttagaaaag acacagtaca gtgtgtttta caaaaattat 3481 tcacagcact aaccctgtgt ttaaaaggag taattaggaa cacaaaccca gaatcactgt 3541 taaaatgcct actagcaaaa ttgcatttaa atttcacaag cagtttttta tacagcagtt 3601 cacttttttc cttagtggtg tgcactataa agcttgttaa tgttctatta ctaaacacag 3661 cctgacttac aaattcattt aaacagtctg gaaaagggag gtggatcatc tccccttttt 3721 ctctttgggg gagttgcttg agagttgggc attgtggact ccggtccatt ctcatttggg 3781 tcaaatcttc ccattcaaat tcttcatggc atgtaaggtc tggctgttcc tgtgaatgat 3841 aatacccaga atcattttgt gaggttgagg cagttggctg tgaagtgtca gattttctct 3901 ttttgctata ttcttctcta tctctcctaa tttgttcttc ttcccaagct ctgttgaagt 3961 tttcccacca ctcttcccat tcttgtgtac catatgtagg aacctaaaaa acaaatagaa 4021 aaattacctg gtaagccaac ttcgcacagc ttggaccatt gcagaattct tccccaccac 4081 tggaaggtct cataagttaa aggaaatcca aaccagtcca gatagcagtc aatgcaatag 4141 cacattatcc aggtcatagg cactctcagt tctttccatc tctttgcatg atttctcttc 4201 aaatagcagc taatgcaatt gcagtgcttt aacccatgag gcaggcaggc atcccatgca 4261 ttgcaaagtc tgttcataaa attaatacca taataatcac cacaagcata ttgagtttgg 4321 tgtacctgag tagtagacca catagagtct tcttcattta ggcattgcat tctcttaaca 4381 gattcctcaa gttgtaagta aaggctgttt agccttttca ttagttcttc attacctccc 4441 ttgtcagggt ggtgttcttt gcatttattt aaataggcct ttctcattaa aggcaaattt 4501 ccccagcagc acatatccaa atcaagaagc tgcattagct cctttgcttc ggatctgctc 4561 agggttctat ccatttttct gtctagcagt ttcgccagca aaaagcctcc aatagcctcc 4621 gagcctctcc cttttttgca aaaggcgaag caaagagaag cctcaggcct ccggtattta 4681 tagtaaaaaa aggtagaggg aacaggaagg gacttgctat ttttttatct tctgcaaagc 4741 tgcctaacag gattttctgc cccagtgact cacattttgt ggttcagtgg aaggtcagtg 4801 caaggctgca ccaatccata cacgtggtgc agtcatgcat gaaataggat taaatgccag 4861 agctgtcaaa ctgagcggtg agtcatgctc aggtgttgtt tacatgttct gtagtagggt 4921 ggagccacca ggtggaataa cccggaactg tagttgccat tttcagtttc ctacttcttt 4981 ccggctggct tgttaagcag gaaggttaac agcaggttaa agctctatgg ga //