LOCUS D83409 3516 bp RNA linear VRL 08-MAR-2003 DEFINITION Barley mild mosaic virus complete sequence of genomic RNA2, complete cds. ACCESSION D83409 VERSION D83409.1 KEYWORDS polyprotein precursor. SOURCE Barley mild mosaic virus ORGANISM Barley mild mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 (bases 1 to 3516) AUTHORS Kashiwazaki,S. TITLE The complete nucleotide sequence and genome organization of barley mild mosaic virus (Na1 strain) JOURNAL Arch. Virol. 141 (11), 2077-2089 (1996) PUBMED 8973524 REFERENCE 2 (bases 1 to 3516) AUTHORS Kashiwazaki,S. TITLE The complete nucleotide sequence and genome organization of barley mild mosaic virus (Na1 strain) JOURNAL Unpublished REFERENCE 3 (bases 1 to 3516) AUTHORS Kashiwazaki,S. TITLE Direct Submission JOURNAL Submitted (06-FEB-1996) Satoshi Kashiwazaki, National Agriculture Research Center, Department of Plant Protection; 3-1-1 Kannondai, Tsukuba, Ibaraki 305-8666, Japan (E-mail:skashiwa@narc.affrc.go.jp, Tel:81-298-38-8932, Fax:81-298-38-8929) FEATURES Location/Qualifiers source 1..3516 /mol_type="genomic RNA" /db_xref="taxon:12466" /strain="Na1" /clone="Na1SK5" /segment="2" /organism="Barley mild mosaic virus" 5'UTR 1..141 CDS 142..2817 /codon_start=1 /protein_id="BAA18954.1" /translation="MMMNSTIRQGWQQVLKRFSIPASGDRLIISNPTDQPIGLFGAFD TSLQTLSQVGDDPEVLKQKIHIPTHLDIASALEASPRSFPWIFLTNSFCTFGGSIHAQ NLQAFATAEFKSGFCYMNLLVPLSFDIIDAHADSFRVFVEQLPDMLGAYPSLSMVLNV MLHAATRFPEIVSSPVPTIAFDAESLQFHVTDKRGVPGMWNILKAGRVYELLSLAADG VGCEYMLYPVGAAPQYSFWKKSMDHFTSDRFVEFLAMQNLLASALEQDYTTHDALDAL LAALQNAGYTNVVARERRFPNGHDPSTVWLNLSEAPISEKLTDLKRYLLVGHRSDDTA DITHNVHQYVFEVLKTMSVQFSKRTNAYNRARFEVNHKVIWNAEYGRGPQQNAELEAL VLFLNRQSLEIENILHRTTSPVVVTNWQPDVPTAAPEVSEGEPTHAVATPMTEAPAHA TPVEVVNLPSTRSYWAETLVGVLTAVLGTIFALLTRALIRAKRLRRKPTFPWVTLDSG DEDDDHSGGGGGGPQTPGGQPPASPAHRTHQSRLSVQDIASDTSLLSVDLDEDTLSQY DETFQRIRRALFETSFTDILQNSARWISALEAMALADGNAPYTLLAQYLNGIEEAYTS FRNTGHVSRATLSSFFALEDSLRAAGIAFGATTPTQTIQNQFADSPARRWKTRFEQIA CELGDASIKSLADLADIIDTERERSDLTQFDVLAASSISSLCRAVRIISDTTDPDAQL ALVENATAMQNNINAILGTNVSIPFLSATRRLLVTRRIQQAGAENRSGATPETIQQLA DAELIVSEANMFNEMATSQRDIANATQEATIREHVLSPVNALANVGMAAAFFRSGGMR SRALHPAMPTMPGVSAATGRPIFQAFRGRGHRLNR" /product="polyprotein precursor" 3'UTR 2815..3516 regulatory 3217..3221 /regulatory_class="polyA_signal_sequence" ORIGIN 1 aaaaataaaa caaaactaca acccaataca aacaacgaac aacaatcaaa caaacaaaca 61 cacaccaaac acacacagca aaccacagtt tacagctgcg aaacgcgaac tcacacgctg 121 caatctcaga attgaacaga gatgatgatg aactccacga ttcgtcaagg atggcagcaa 181 gtgctcaaac gcttttccat cccagcatcc ggagataggc tcatcatttc caaccccact 241 gatcaaccca taggtctttt tggagcattc gacacatcgt tgcaaacact ctcgcaggtt 301 ggtgatgacc ccgaggtttt gaagcagaaa attcacatcc ccacgcacct ggacatagca 361 tccgcactcg aagccagccc ccggtccttt ccatggattt tccttacaaa ctccttctgc 421 acctttggtg gttccataca cgcccagaat ctccaggcct tcgcaaccgc tgagttcaag 481 agcgggttct gttacatgaa cctgctggtg ccgctcagtt tcgacatcat tgatgcgcac 541 gctgattcct tccgtgtctt tgttgaacag ctccccgaca tgctaggtgc ctacccttcg 601 ctcagcatgg tgctaaacgt catgttgcac gcagccacgc gcttccccga gattgtgagc 661 tcccccgttc caaccatagc attcgacgcc gaatcactgc agttccacgt gactgataaa 721 cggggcgttc ctggcatgtg gaacatactc aaagccggcc gcgtatacga gcttctctcg 781 ctcgcagcgg atggcgtggg ttgtgagtac atgctgtatc ccgttggcgc tgcaccccag 841 tactccttct ggaagaaatc catggaccat ttcacatctg accggttcgt tgaatttcta 901 gctatgcaga acctgcttgc tagtgcgctt gaacaggatt acacaacaca tgacgcactt 961 gatgcattac tagcagctct acagaacgca ggctacacaa atgttgtcgc aagggaaaga 1021 agattcccaa atggtcacga ccctagcact gtctggctaa acctaagtga ggcccccatt 1081 tcggagaagc taactgatct caaacgatac ctcttagttg gccacagaag cgacgacact 1141 gcagacataa cacacaacgt acaccagtac gtttttgagg ttcttaaaac catgtctgtt 1201 cagttcagca aaagaacgaa cgcttacaac cgcgcccgtt tcgaggtcaa ccataaggtg 1261 atttggaatg cagagtatgg acgcggtccc caacaaaacg ccgagcttga agcccttgtt 1321 ttgtttctta ataggcaatc gctggagatc gagaacattc tgcacaggac aaccagtccc 1381 gttgtcgtaa cgaactggca acctgatgtt cccactgcag cacctgaagt cagcgaggga 1441 gaacccacac acgcagtcgc aacacctatg actgaagcgc cagcacacgc aactcctgtt 1501 gaagttgtga atctgccatc aacacgctct tattgggccg aaacactcgt aggcgtgctg 1561 actgcagtcc taggaaccat cttcgcctta ctcacccgag cactcattcg tgcaaagagg 1621 ttgcgaagga agcccacctt cccttgggta acactggatt ccggagatga agatgacgac 1681 cattctggag ggggaggagg tggcccgcaa acacctggcg ggcagccccc agcctcaccg 1741 gcgcatagga cgcatcagtc acgcctctcc gtgcaagaca tagcatcgga caccagcctg 1801 ctgagtgtgg accttgacga agacacgctc tcccaatacg acgaaacctt ccaaaggatc 1861 cgtcgtgcgc tctttgaaac cagtttcaca gacattctgc aaaactctgc tcgctggatc 1921 tctgcgttag aagcaatggc attagcagat ggcaacgccc cttacacgct tctcgcgcaa 1981 tacctcaatg gtattgagga ggcgtacacg agcttccgta acacgggaca tgtttcgcgc 2041 gcaacactct caagcttctt cgctttggaa gacagcctac gtgcggctgg catagccttt 2101 ggagccacga caccaacgca aactatacag aaccagtttg ctgactcccc agcccggcgt 2161 tggaaaacac gcttcgaaca aatcgcatgc gaattgggcg acgctagcat taaatcgctt 2221 gccgatcttg cggacatcat cgacaccgag cgcgaaagaa gtgacctgac tcagtttgat 2281 gttcttgcag cctcttccat aagcagcctc tgtcgcgccg ttcgcatcat cagtgacaca 2341 actgatccag atgcgcaact ggccctcgtt gagaacgcga cagccatgca gaacaacatt 2401 aacgccatcc tggggacaaa tgttagcata cctttcctca gtgcaacacg tcgcctactc 2461 gtcacgcgac gcattcagca agccggcgca gaaaatcgtt ctggcgcaac acccgaaaca 2521 atacagcagc tggctgatgc tgaactaatt gtcagcgagg ctaacatgtt caacgagatg 2581 gccactagtc agagagatat cgccaatgct acacaagagg ccaccattcg tgagcatgtg 2641 ctcagtcctg tcaatgccct ggcaaatgtt ggcatggctg ctgctttctt ccggtctggc 2701 ggcatgcgct caagggctct ccaccccgca atgccaacaa tgcctggtgt ttctgctgcc 2761 acgggacggc caatattcca agcctttaga gggcgaggac atcgtctcaa tagatgatga 2821 aactctgtgc tcttgcacag cactgaacaa gcgacacacg cttgttgtga tagttaattt 2881 cacgcacagc gtgccactga acaagcgaca cacgcttgtt gtgataatta attaattttt 2941 gcgcagattc tatctgtgtt ttctagagtg tgctgctctg cagctgcatt ggagggtttc 3001 acgggaacga catcatcaca ccccatccac aaaccgcctg cattcacata ttgtgccact 3061 ttaaatactc atacgtatag gcaagtgcct ttctcgcaga gcatccctga gtgatggcta 3121 ttcacgcgat cgcaatcaac tgacttaatc ctcggttttg caatcaaata gtgagttcca 3181 cctccggatt tgttccccta gaactgcaat cctcgttatg ttgtcgctga ttactatcag 3241 ctcgtaaacc atgatatcca cccacaatta actactcgtg tactaacagt accggatacg 3301 cctatcctgc acttaaacct gcaggacgct atcagatccg cctactgtta ccatttgtgt 3361 agttcgttgt ggttccacct catatctaaa ttcagtacct gcatacaaaa cgtcatgcat 3421 ccctgttcaa catgaacgcg ggtttgggaa gaagcaagtc atcatagact gctggcattg 3481 ttaggttgac aatgtttatg tacacaggaa cgtgac //