LOCUS BMMCG 7261 bp ss-RNA linear VRL 30-MAY-1996 DEFINITION Barley mild mosaic virus RNA1 encoding P3, 6K1, CI, 6K2, NIa, NIb and capsid proteins. ACCESSION L49381 VERSION L49381.1 KEYWORDS CI helicase; NIa proteinase; NIb RNA polymerase; capsid protein; polyprotein. SOURCE Barley mild mosaic virus ORGANISM Barley mild mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Bymovirus. REFERENCE 1 (sites) AUTHORS Dessens,J.T. and Meyer,M. TITLE Characterization of fungally and mechanically transmitted isolates of barley mild mosaic virus: two strains in competition JOURNAL Virology 212 (2), 383-391 (1995) PUBMED 7571407 REFERENCE 2 (bases 1 to 7261) AUTHORS Meyer,M. and Dessens,J.T. TITLE The complete nucleotide sequence of barley mild mosaic virus RNA1 and its relationship with other members of the Potyviridae JOURNAL Virology 219 (1), 268-273 (1996) PUBMED 8623538 COMMENT Original source text: Barley mild mosaic virus (strain Reims-M) cDNA to genomic RNA. Dessens,J.T. and Meyer,M., Characterization of fungally and mechanically transmitted isolates of barley mild mosaic virus: two strains in competition, Virology 212, 383-391 (1995) refers to bases 6112 to 7262. FEATURES Location/Qualifiers source 1..7261 /mol_type="genomic RNA" /db_xref="taxon:12466" /strain="Reims-M" /organism="Barley mild mosaic virus" 5'UTR 1..147 /note="putative" CDS 148..6924 /codon_start=1 /protein_id="AAC42215.1" /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFL VLSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWL HMMKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIESCERSVNHLTTFQFAREY GLSTTYFEKLSNFGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCI WFLCCCWSPARWCFNSAVSIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAIC AVCCVHLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADSLSNNLHKISRLVN LFLDDNRGFATPAFDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDEEDATQDDAIY DSDGLQTFKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELATSMAQEAKQWSQV VGHTGSGKSTRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGR HEGWSNLGDKTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQE VTNVRKFYVSATPRDGKKCPEAVRRYEIKTVKTECSSVDTFVRSQEKENTLYVLNHDT VLVFLAGKAECDRAASNWNKLYSTNMYAHSLTGDNFTIAYEKIVTRMLTERTIVFCTN ILETGVTLNVDCVVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGYA ICIGNPETRHDLVPPETLYEAALLSFVHGVQFYINEHFENAWIQGVTKSQASVMTQFK LSPFLMRDIVRDDGAIPLSLHKILKDYTHRNTDLIGTKLSVMSHIYNSWPLYRTVQQS ISRGDSNVPQALRYARVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDNSSTSRIIN LQIGKMHIINSMEEVKINIHSYQRSAEGLRSVKDSFESSIFRTKLLRGNPTGKITKRI ETLLDNVRVLQQVHAKLEMIAYSGGEKVNMDKKSVDELNEIVELQSKNSLTAEELARI LHLTKPTSTFFNLFAERGRQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYN RDKRMGYDSYEEDEVRNKINKKFKERSTRFSNDSKPETNSKYRNLKQEFVNFYDLKTD ANVLQAVFTAMDGAVLLQTESPMADIGRVNKLLQDHFGDSESRAVHEGLNTMVKCHLT MKDGRQFELDMEQHDPEYVAKLGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGM TMKPMSSFTIDSAKMVGFIKTAKDTLNCILYGDWIIAPAHIQQGEGDITFIFQHIQFT TTTERLASYGIRQFKGLDLVVIRRPQQIRAVKKDMRASILDTPTEIQMLYLSVKGGKY QVSTSAVCFPHYNNRWGHVISTAEGMCGCIVFDPTTNHIVGIHVSYNDTRRRNEFQAF TSDVLTTINAPGHEIPFSPWVFDWKFCGYTTKPRNMQSAPSTLERLNINATGFGFKLN AQEIKPAMLRSTESFSREFPNTQFKLIGEVKKGLIDKHTITGENPYFLEFLNTFKPYQ WVQAFMDEYAPSILAYDAYFKDLKKYDRPPHAKAFCQNTLTKAKNKMINILEEAGMGR TLVRTTEQVLLDMAWTTSGGPLYHGKKIDIVQHLSDDELVQFSEACQQALITGTLDGV WNGSLKAELRSSQKILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVGI NKFNRGWQNLYEKLNKPGWTHGSGDGSRFDSSIDGFLFDVIKDIRKHFMDAEHHKELD TINEEIVNTKICLANGLIIQKNCGNNSGQPSTVVDNTLALMTAFLYAYARLTGDHAFE LMDENFVFVCNGDDNKFAMSPSFMTKFGCDFSPFLSELGLTYEFDEATEDICENPYMS LTMVRTSFGIGFSLSIERIVAILQWSRAGGVLHAYLSGIAALFESFNTPKLFNLVHTY LLWLITEHEEELFSMMELKDMFMPLPTKEQIALLHYVGTEPIVEDTFLQAGHEEPDPI VPPASDTDLTNMAAAPPDNRRSRAVIPRGTSDWSMPEPTMRTLGFKSKIKIETLADVP EGYMNTFASVATESQRRKWEEATRGDFGITDDEKWEKLLIAACIYFADNGTSPNFDEE LTMEVNSGLNSIKEYPVRPFVVRAKKISTLRRIFRCYSIETKLMFVKLRRVPHWAIKH GCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTSNSLLTSEQTNMRTTETRRRN DYDGHEALLR" /product="polyprotein" /note="putative" mat_peptide 148..1023 /product="P3 protein" /note="putative" mat_peptide 1024..1224 /product="6K1 protein" /note="putative" mat_peptide 1225..3198 /gene="CI" /product="helicase" /note="putative" mat_peptide 3199..3390 /product="6K2 protein" /note="putative" mat_peptide 3391..3927 /product="viral protein genome-linked" /note="putative" mat_peptide 3928..4566 /product="proteinase" /note="putative" mat_peptide 4567..6168 /gene="NIb" /product="RNA polymerase" /note="putative" mat_peptide 6169..6921 /experiment="experimental evidence, no additional details recorded" /product="capsid protein" /citation=[1] gene 1225..3198 /gene="CI" gene 3391..4566 /gene="NIa" misc_feature 3568..3570 /function="covalent binding to viral RNA" /gene="NIa" /note="tyrosine residue; putative" gene 4567..6168 /gene="NIb" 3'UTR 6922..7261 /citation=[1] /note="putative" ORIGIN 1 aaaataaaac ttcaatacaa cccaatacaa acaacgaaca acaaacaacg aatttgcaac 61 ttaccacagc aatatcgacc gctagtaaca gtttaaccaa actcaacaac aaatcatcct 121 tcgaccaaac gaactctgac catcgagatg gaggagttca ttcctgaagt gttctaccag 181 aaccaggttc agagtcttaa gaaaattctc aaatcctgga aacgcgacac ttctatttac 241 gcgtatcttg ctcgcgagca agaggtccta gccttccttg tactgagtcc cgcacacatt 301 gccaaattga acaaactact cactgaggag tctgcacgat gtgccctgct tgcccagaac 361 tgtgaaacca tcgaagctct ggccgttgtt cggcaagccc tgcagggtgt cacgctacac 421 tttggtgata atggcatgga gaaaggctgg ttgcatatga tgaaagcact tgatgcatgt 481 cttgacgaaa gcttcagcga gaacgccgcc gcactcaaga aaagcattca ggcggttggc 541 cacaagctca tcgcagcaaa aaaccgcatc gaaagctgcg agcgatctgt gaatcacctt 601 acaacgttcc aatttgctcg cgaatatggc ttaagtacca catacttcga aaaattatcc 661 aatttcggtg ggcatattcg aagttttgtg tggtccagcg actcaggaga aattttccca 721 aaacttaaaa gatcatcacg tacgaggcgc atctcgacat tcacgagcta ctactggggt 781 gagttctggt gcaactgcat ctggttcctc tgctgctgtt ggtctcccgc gcgctggtgt 841 tttaattctg cagtttccat atggagtcta tgtggcgttt taaacttatc tatgattgtt 901 ctacagtttg ctcttaagcg tcattttggt agatactatt ttcgatacat aatgtctggt 961 gtcctagcta tttgcgccgt gtgttgtgtt catcttaaaa acagaaaagg gcctatattg 1021 caagcctccc aaaaagataa gcgtttcatc ggaattttag ctttctgcat tactgttata 1081 tacatgtttg atgttgatct agccgactca cttagcaata atcttcacaa gatctctcgc 1141 cttgtgaatc ttttccttga cgataaccgc ggattcgcaa cacccgcttt cgacaaccta 1201 acggacttca caacaattct tcaaagtgga acatcaagtg acgacctaaa gattgtccag 1261 gatacgttgg ctgtggtttt acaagtcgac gaagaggacg caactcagga tgacgcaata 1321 tatgattccg atggacttca aactttcaag caatgggtct ctcacaacca actagccgga 1381 atgcagcttg cacgcccgtt acaatacccg tgctcgaaca cctatggcct gaccgcagat 1441 aacgtcgcag aactagcaac tagcatggca caggaggcaa agcagtggtc acaagttgtt 1501 ggacacactg gttccgggaa gtccacacga ctaccaactg catacgccaa ctgtttgaaa 1561 ggcttagctg ggcgaaagaa aaacgttctc gtttgtgaac ccactagagc tgcaaccgtc 1621 aatgtaacca gtggcatttc acagaatttt ggtaggcttg tttacggacg gcatgaaggc 1681 tggagtaacc ttggcgacaa aacaatacaa gtcatgacat atggttctgc actcgcagcg 1741 tggaaagtcg acaacaaatt cctaagccag tttgacgcag tgtttctcga cgaatctcac 1801 ctcatcacca cgcacgccct tgtctttgag agcatctgcc aggaggttac aaacgtccgc 1861 aagttctatg tgtcagccac accccgcgat ggcaagaagt gtccagaagc cgtgcgtagg 1921 tatgaaatca agactgttaa aaccgagtgc agcagcgtcg acactttcgt tcgaagccag 1981 gagaaggaaa acacgcttta cgttctcaat cacgacaccg tgctcgtttt tctcgctggg 2041 aaggctgagt gcgatagagc agcaagcaac tggaacaagc tgtactcaac caacatgtac 2101 gcgcactccc taacaggtga caattttaca atcgcatatg agaaaattgt cacacgcatg 2161 ctaactgagc gcaccatcgt attctgcaca aatatcctgg aaaccggtgt caccctcaac 2221 gtggactgcg ttgttgactt tggattcacc atgcgtcctg aacttgatct tgttgacaaa 2281 tcgctaacct tgatgcgacg ccgagtcacc gagaacgagc gtgcacaacg catcgggcgt 2341 gcaggaaggc ttagaacagg gtacgcaatc tgcatcggca atcccgaaac gcgccacgat 2401 ctggtgccac cagaaaccct ctacgaggca gcccttctta gcttcgttca cggcgtgcaa 2461 ttctatatca atgagcactt cgagaacgcc tggattcagg gcgtcacaaa gtctcaagcc 2521 tctgtgatga cgcagtttaa gctttccccc ttcctcatgc gtgacattgt tcgtgatgac 2581 ggtgcaatac cactatcact ccacaagata ctcaaggact acacgcaccg caacactgat 2641 ctgataggaa caaaactctc cgtcatgtcg catatctaca actcgtggcc tctctaccgg 2701 acagtgcaac aatccatttc tcgtggagat tctaatgttc cgcaagcgct cagatacgca 2761 cgcgttcctt tcaacgtcag cactgcccat gattttccat gggaagattt cgcacaggca 2821 tgccttgagt tccagccacg tgttcttcag gtcttcagtg acaacagcag cacttcgcgc 2881 ataatcaacc tacagattgg caagatgcac atcatcaatt ccatggaaga agtcaagata 2941 aacatacaca gctatcagcg ctctgcagaa ggcctacgct cagtcaaaga cagctttgag 3001 agctcgatct ttcgaacaaa actgcttcgt gggaacccaa ctggaaagat aaccaagcgc 3061 attgagactc tccttgataa cgtgcgggtg ctacaacagg tgcacgcaaa actagagatg 3121 attgcatact caggtggaga gaaagttaac atggacaaga aatcagttga cgaactcaat 3181 gagatcgtcg aactccagag caagaattca ctcactgccg aagaactagc acgcatattg 3241 caccttacga agcccacctc cactttcttc aatctttttg ctgaacgcgg ccgacaaatg 3301 ctcgtcactc tcctggtcat ggttgccgcc tcgctcatgt atcttgtttt ctgggtttcc 3361 ccaaggaaac aagacgacat taccattgaa ggaaaaggta gagcatacaa tcgtgacaag 3421 cgcatggggt acgactccta cgaagaggac gaggttcgca acaagatcaa caagaagttc 3481 aaagaacgca gcacaaggtt ctccaacgat tccaaaccgg aaacaaactc aaaataccgg 3541 aatctgaagc aagagtttgt taatttctat gatcttaaaa ctgatgcaaa cgtactacaa 3601 gctgtgttca ctgcaatgga cggagccgtt cttcttcaaa ccgaatcgcc aatggcagat 3661 attggccgtg tcaataaact gctgcaagac cactttggag atagtgagag ccgagccgtg 3721 catgaaggtc tcaacaccat ggttaagtgc cacttaacta tgaaagatgg aagacagttt 3781 gagctcgaca tggaacagca tgatcccgag tatgttgcca aacttggagg tgaagttggt 3841 ttcagaatga acagagatga tctacgccaa gttggcgcca cacggtacat caacccaaga 3901 gcacaaacat ccgcagcgac gctcgaaggc atgaccatga aacccatgag ctctttcacc 3961 attgatagcg caaagatggt tggcttcatc aagactgcaa aagacacact caactgcatc 4021 ctctatggcg actggatcat agctcctgcg cacatacaac agggcgaagg ggacataaca 4081 ttcatctttc agcacataca gttcacgacc acaactgagc gcttagccag ctacggcatc 4141 cgacaattta aaggccttga ccttgttgtc atccgacgcc cccaacagat acgcgcggtt 4201 aagaaggaca tgcgtgctag cattcttgac acacctactg agatacagat gctatatttg 4261 tcagtaaaag gcggcaagta ccaagtgtcc acgtccgctg tgtgctttcc acactacaac 4321 aaccgatggg gacatgtcat ttcaacggct gaaggtatgt gcggttgcat tgtatttgac 4381 cccacgacta atcacatcgt tggaattcac gtctcctaca acgacacgcg cagaagaaat 4441 gagtttcaag ctttcacaag tgacgttctg acaacgatta atgcgcctgg acacgaaata 4501 cctttcagcc cgtgggtctt tgactggaag ttttgcgggt acacgacaaa accacggaac 4561 atgcaaagcg caccgagcac gcttgagaga ctcaacatca acgccacagg tttcggtttc 4621 aagctcaacg cacaggagat caaacctgcc atgctacgct ccacagagtc gttctccagg 4681 gagtttccaa acacacagtt caaacttatc ggtgaagtga agaaaggact catcgacaaa 4741 cacacgatta caggagagaa tccctacttc cttgaattcc tgaacacatt caaaccatat 4801 caatgggtac aggccttcat ggacgagtac gcaccctcca tccttgccta tgatgcgtat 4861 ttcaaggact tgaagaaata cgataggcca ccacatgcaa aagctttctg ccagaacaca 4921 ttaaccaaag ctaaaaacaa gatgatcaac attctcgaag aggcaggcat gggaaggacc 4981 ctagtacgaa ccaccgagca agtcttgctt gacatggcgt ggactacctc tggtggacca 5041 ttataccatg gtaagaagat tgacattgtg caacacttgt ctgatgacga gcttgtacaa 5101 ttcagtgaag cctgccaaca ggctctcatc actggaacgc tggatggagt ctggaacgga 5161 tcactcaaag ccgaactgcg ctcttcgcag aaaatccttg aacggaaaac tcgtgttttc 5221 actgctgccc ccatcacaag cctaatcgca atgaaatatt atgtggatga tttcaacaag 5281 cagttctata aaacccacct caaagcacca cacacagtcg gcatcaacaa gtttaaccgc 5341 ggatggcaga atctctatga gaagctcaac aaacctgggt ggacgcatgg gagcggggat 5401 ggctccaggt tcgatagctc tattgacgga ttcctttttg acgtcatcaa agacatccgg 5461 aagcatttca tggatgcaga acaccacaag gagctagaca caattaatga agagattgtc 5521 aacacaaaaa tatgtctagc aaatggtctc atcatccaaa agaactgtgg gaacaacagc 5581 gggcagccaa gtactgttgt agacaacaca cttgcactca tgactgcttt cctctacgca 5641 tacgcccggc tcactggaga ccacgccttc gaactcatgg acgaaaactt tgttttcgtt 5701 tgcaatggtg acgacaacaa gttcgctatg tcacctagct tcatgacaaa gtttggatgc 5761 gacttctcac cattcctttc tgagctaggg ctaacctacg aattcgacga agccactgaa 5821 gacatttgtg aaaaccccta catgtccttg acgatggtcc gcacctcgtt tgggatcggt 5881 ttctccctct ccatagagcg catcgttgca atcttgcaat ggagccgcgc tggcggagtc 5941 ctgcatgcct acctctctgg cattgcggct cttttcgaat ccttcaacac acccaagctc 6001 tttaatctcg tgcacacata cctcctctgg ctcatcacag agcacgagga ggaactcttc 6061 tctatgatgg aactcaaaga catgttcatg cccctgccca ctaaggaaca gatagccttg 6121 ttgcactacg tcgggactga gcccatcgtg gaggacactt tcctgcaagc agggcatgag 6181 gaaccagatc ccatagttcc accagcctcc gacaccgatc tgacaaacat ggctgcagca 6241 ccaccggaca acagaaggtc acgtgccgtc atcccccgtg gcactagtga ttggagcatg 6301 cccgaaccca caatgcgaac actgggtttt aagtccaaga tcaaaatcga aacacttgct 6361 gatgtccccg aagggtatat gaataccttt gcgtccgttg caactgagtc gcaacgtagg 6421 aagtgggaag aggccacgcg tggcgatttt ggcatcaccg acgacgagaa atgggaaaaa 6481 ttgctcattg ctgcctgtat atactttgca gataatggca cctcaccaaa ttttgatgag 6541 gaactcacta tggaagttaa tagcggtctc aactccatca aagagtatcc cgttcgccct 6601 ttcgtcgtca gggccaagaa gatctccaca ctgcgcagga tcttccgctg ttattccatc 6661 gaaacgaaac tgatgttcgt aaagctgagg cgcgtgccgc attgggccat aaagcacgga 6721 tgccttgatg aaatcgtctt tgatttcatg atccccgacc agttcacctc caggactgca 6781 ctggaaacac tgaagcagac caagcttgcc gccattggtg ttggcacaag caattctctt 6841 ctcacctctg agcagacgaa catgaggacc actgaaaccc gaaggcgcaa tgactacgat 6901 ggtcacgagg cgcttctccg gtagatctct catgcagttt catttccttt caagcagtgc 6961 atttaaatac gcttttaatt acatcaagcg tcaagaattc ctcccgcttg cagcaaatcc 7021 ttaaagggtg gcactttgtg ttatgcaatg gaaaattcag tgacgcaatc aaccatcatt 7081 ggttggtgac aacgcagtac tttctttctt tcacatcaag cgaccagcac atcgcccgct 7141 tacagctaat cctacctgag ggtggcactc tgtgttatgt aatggaatgt gctatctcgc 7201 aaccaaccgt cattggttga tggtgcggct aacacccgcg ctcttgtata ccggaaaggt 7261 t //